mRNA_P-wetherbeei_contig53235.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53235.1.1
Unique NamemRNA_P-wetherbeei_contig53235.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: A0A523P0K1_9PROT (Dehydrogenase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P0K1_9PROT)

HSP 1 Score: 293 bits (750), Expect = 3.550e-94
Identity = 127/180 (70.56%), Postives = 156/180 (86.67%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLHCL 540
            GVWQD++ARL  PL+R G+KG   F RISWD ALA +A++++  I  HGP++I+HTHYSGTLSL+ Y+FPNR F++LGASEVDPD+ICNAAGHVAW LL+G+S+ GFDPR A+D+ CI+VWGANPSHSAPHAH HWL+ETP K++V+DP+RTETAAAADLHLQPRPG+DAALAF L H L
Sbjct:   72 GVWQDADARLSHPLRRTGKKGSATFERISWDVALAEIADKLQRVIATHGPEAIIHTHYSGTLSLLAYLFPNRFFHYLGASEVDPDTICNAAGHVAWQLLYGNSVMGFDPRTAQDSQCIIVWGANPSHSAPHAHAHWLRETPAKIIVIDPMRTETAAAADLHLQPRPGSDAALAFGLAHVL 251          
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: A0A3D5DGG4_9GAMM (Dehydrogenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGG4_9GAMM)

HSP 1 Score: 273 bits (699), Expect = 2.150e-85
Identity = 121/180 (67.22%), Postives = 149/180 (82.78%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLHCL 540
            GVWQDS++RL +PL+R+G KG   + RISWD AL  +A  +   I   G + ILHTHY+GTLSLI Y FP+R FN+LGAS VDPDSICNAAGHVAW LLFG+S++GFDPR A+D+NCILVWGANPSHSAPHAHEHWL+++P K++V+DP+ +E+AA ADLHLQ +PG+DAALAF LLH L
Sbjct:   61 GVWQDSDSRLNYPLRRIGDKGSAKYERISWDFALEEIATNLNRIIQQDGAEKILHTHYTGTLSLIAYKFPDRFFNYLGASVVDPDSICNAAGHVAWNLLFGNSLKGFDPRTAKDSNCILVWGANPSHSAPHAHEHWLEDSPAKIIVIDPIYSESAATADLHLQLKPGSDAALAFGLLHVL 240          
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: A0A6L8EMI4_9GAMM (Molybdopterin-dependent oxidoreductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EMI4_9GAMM)

HSP 1 Score: 263 bits (673), Expect = 1.550e-81
Identity = 120/180 (66.67%), Postives = 141/180 (78.33%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLHCL 540
            GVWQD N RL +PLKR+G KG   F RISWDEA+ T+  R++A I GHGP+SI+HTHYSGTLSLI  +FP R F  LGASEVDPDSICNAAGH A +LL+G S  GFDPR  RD+NC+L+WGANPSHS PH+H+HW   +  K +V DPLRT+TA  AD HLQ RPGTDAALA+SLLH +
Sbjct:   57 GVWQDENERLLYPLKRIGEKGKGQFERISWDEAVKTITGRLKADIAGHGPESIIHTHYSGTLSLIALLFPMRFFLKLGASEVDPDSICNAAGHAALSLLYGESHVGFDPRTIRDSNCVLIWGANPSHSGPHSHKHWFAASAVKKIVADPLRTKTARDADYHLQLRPGTDAALAYSLLHVM 236          
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: A0A6B1B3F3_9ACTN (Molybdopterin-dependent oxidoreductase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1B3F3_9ACTN)

HSP 1 Score: 262 bits (669), Expect = 5.130e-81
Identity = 118/178 (66.29%), Postives = 141/178 (79.21%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLH 534
            GVWQD + RL  PL+RVG KG   F  ISW+ ALA  AER +  +D  GP S+LHTHYSGTLS++ +MFP R FN LGA+EVDPDSICN AGH+AWTL+FG+S+ GFDPR A D++CI+VWGANPSHS PH  +HWL +  G VVVVDP+RT+TAA ADLHLQ RPGTDAALAF++ H
Sbjct:   53 GVWQDPDQRLSAPLRRVGPKGEGAFEPISWEAALAYTAERTQRVVDERGPASVLHTHYSGTLSMVAFMFPMRFFNRLGATEVDPDSICNLAGHIAWTLMFGTSVAGFDPRTAADSSCIVVWGANPSHSGPHMDQHWLGDFDGAVVVVDPIRTDTAARADLHLQLRPGTDAALAFAMAH 230          
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: A0A1G0JXT0_9GAMM (4Fe-4S Mo/W bis-MGD-type domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0JXT0_9GAMM)

HSP 1 Score: 256 bits (655), Expect = 6.390e-79
Identity = 116/180 (64.44%), Postives = 138/180 (76.67%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLHCL 540
            GVWQD  ARL +PL+R G KG   F RISW+ ALA +A R +A +   GP++ILHTHYSGTLSL+  +FP R F+ LGA+EVDPD+ICNAAGHVAW  +FGSS  GFDPR A  + CIL+WGANPSH+ PH H+HW        +VVDP+RT+TAA AD+HLQPRPGTDAALAFSLLH L
Sbjct:   56 GVWQDPAARLLYPLRRSGPKGSGKFERISWETALAAIAGRTQAILSAQGPEAILHTHYSGTLSLMALLFPMRFFHRLGAAEVDPDTICNAAGHVAWRTMFGSSSMGFDPRTADQSRCILIWGANPSHAGPHTHKHWFAAARVARIVVDPIRTDTAAVADIHLQPRPGTDAALAFSLLHVL 235          
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: A0A6B1G8T4_9ACTN (Molybdopterin-dependent oxidoreductase n=5 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1G8T4_9ACTN)

HSP 1 Score: 256 bits (654), Expect = 8.450e-79
Identity = 115/178 (64.61%), Postives = 138/178 (77.53%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLH 534
            GVWQD   RL  PL+RVG KG   F  ISW+ AL  VA+R +  ID  GPQ+++HTHYSGTLS++ +MFP R FN LGA+EV+PDSICN AGH+AW+ +FG S+ GFDPR A D++CI+VWGANPSHS PH  EHWL +  G VVVVDP+RT+TA  ADLHLQP PGTDAALAFS+ H
Sbjct:   53 GVWQDPRERLSTPLRRVGPKGEGAFEAISWEAALREVADRTQQVIDERGPQAVIHTHYSGTLSMLAFMFPMRFFNRLGATEVEPDSICNLAGHIAWSAMFGISVAGFDPRTAADSSCIVVWGANPSHSGPHMDEHWLGDFDGAVVVVDPIRTDTALRADLHLQPFPGTDAALAFSMAH 230          
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: A0A2E9R8C1_9GAMM (Dehydrogenase (Fragment) n=2 Tax=root TaxID=1 RepID=A0A2E9R8C1_9GAMM)

HSP 1 Score: 248 bits (634), Expect = 8.940e-79
Identity = 111/180 (61.67%), Postives = 135/180 (75.00%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLHCL 540
            GVW D NARL +PLKR G+KG   F RISWD+ALA VA R       HG   I HTHY+GT S+I   FP R FNH+GA+EVDPD+ICNAAGH A + +FG S  GFDPR ++D+ CIL+WGANP+H  PH ++HWL+E   KV+V+DP+RTETA +ADLHLQ RPG DAALAFS+LH +
Sbjct:   61 GVWLDENARLLYPLKRSGKKGSGKFERISWDDALAEVANRFGDIDREHGADRIYHTHYTGTCSVIAGQFPKRFFNHIGATEVDPDTICNAAGHAALSYVFGDSAAGFDPRTSKDSKCILIWGANPAHCGPHVYQHWLREHGAKVIVIDPVRTETATSADLHLQVRPGADAALAFSMLHIM 240          
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: UPI0017474439 (molybdopterin-dependent oxidoreductase n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI0017474439)

HSP 1 Score: 253 bits (647), Expect = 1.030e-77
Identity = 113/180 (62.78%), Postives = 141/180 (78.33%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLHCL 540
            G W D   RL  PLKR+G KG   FV ISWDEAL+T+AE+++A +   G QS+LHTHY+GT SLI   FP R FN +GA+EVDPD++CN AGHVA  ++FG S+ GFDPR A+D +CILVWGANPS SAPHAH+HWL E PGK++V+DP++  TAAAADL+LQP PG+D ALAF+LLH +
Sbjct:   57 GAWIDRQVRLTHPLKRIGAKGKGQFVPISWDEALSTIAEKLQAILSTTGGQSVLHTHYTGTCSLIAGFFPLRFFNRIGATEVDPDTVCNKAGHVALQMVFGDSLTGFDPRTAKDASCILVWGANPSSSAPHAHKHWLPEAPGKLIVIDPIKHPTAAAADLYLQPFPGSDGALAFALLHVI 236          
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: A0A355ARQ0_9GAMM (Dehydrogenase n=5 Tax=root TaxID=1 RepID=A0A355ARQ0_9GAMM)

HSP 1 Score: 253 bits (646), Expect = 1.530e-77
Identity = 111/180 (61.67%), Postives = 139/180 (77.22%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLHCL 540
            GVW D NARL +PL+R G KGG +F RISWDEALA +A+R       +G   I HTHY+GT S+I   FP R F+H+GA+EVDPD+ICNAAGH A + +FG S+ GFDPR ++D+ CIL+WGANP+H  PH HEHWL+E   KV+V+DP+RTETAA+ADLHLQ RPG DAALAF++LH +
Sbjct:   61 GVWLDENARLLYPLRRSGNKGGGEFERISWDEALAEIAQRFVDIDHQYGADRIYHTHYTGTCSVIAGKFPKRFFDHIGATEVDPDTICNAAGHAALSYVFGDSVSGFDPRTSKDSECILIWGANPAHCGPHVHEHWLREHDAKVIVIDPVRTETAASADLHLQVRPGADAALAFAMLHVI 240          
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Match: A0A7C7YD10_9DELT (Dehydrogenase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YD10_9DELT)

HSP 1 Score: 249 bits (635), Expect = 5.700e-76
Identity = 115/178 (64.61%), Postives = 135/178 (75.84%), Query Frame = 1
Query:    1 GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGPQSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLFGSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPLRTETAAAADLHLQPRPGTDAALAFSLLH 534
            GVW DS ARL  PL+R G KGG  F RISWDEAL  +AE++       G ++ILHTHY+GT S +   FP R F+ LGA+E  PDSICN AGHVAW  +FGSS +GFDPR A+D+ CI+VWGANPSHSAPHAH+HWLKE+P KVVV+DP+R ETA  ADLHLQ  PG+DAALAF L H
Sbjct:   56 GVWLDSEARLLHPLRRTGPKGGGHFERISWDEALVEIAEKLTTIGAEQGAEAILHTHYTGTCSWLANAFPGRFFSRLGATEAAPDSICNNAGHVAWDYVFGSSDRGFDPRTAKDSRCIVVWGANPSHSAPHAHKHWLKESPAKVVVIDPIRHETAEEADLHLQLIPGSDAALAFGLTH 233          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53235.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523P0K1_9PROT3.550e-9470.56Dehydrogenase (Fragment) n=1 Tax=Proteobacteria ba... [more]
A0A3D5DGG4_9GAMM2.150e-8567.22Dehydrogenase n=1 Tax=Gammaproteobacteria bacteriu... [more]
A0A6L8EMI4_9GAMM1.550e-8166.67Molybdopterin-dependent oxidoreductase n=1 Tax=Gam... [more]
A0A6B1B3F3_9ACTN5.130e-8166.29Molybdopterin-dependent oxidoreductase n=1 Tax=Aci... [more]
A0A1G0JXT0_9GAMM6.390e-7964.444Fe-4S Mo/W bis-MGD-type domain-containing protein... [more]
A0A6B1G8T4_9ACTN8.450e-7964.61Molybdopterin-dependent oxidoreductase n=5 Tax=Aci... [more]
A0A2E9R8C1_9GAMM8.940e-7961.67Dehydrogenase (Fragment) n=2 Tax=root TaxID=1 RepI... [more]
UPI00174744391.030e-7762.78molybdopterin-dependent oxidoreductase n=1 Tax=Pho... [more]
A0A355ARQ0_9GAMM1.530e-7761.67Dehydrogenase n=5 Tax=root TaxID=1 RepID=A0A355ARQ... [more]
A0A7C7YD10_9DELT5.700e-7664.61Dehydrogenase n=1 Tax=Myxococcales bacterium TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53235contigP-wetherbeei_contig53235:1..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1026882.MAMP_02203
PFAMsMolybdop_Fe4S4,Molybdopterin,Molydop_binding,TAT_signal
Model size540
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-69
EggNOG OGsCOG0243@1|root,COG0243@2|Bacteria,1NR6J@1224|Proteobacteria,1RMVE@1236|Gammaproteobacteria
DescriptionBelongs to the prokaryotic molybdopterin-containing oxidoreductase family
Cds size540
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.242962-CDS-P-wetherbeei_contig53235:0..5401683186797.242962-CDS-P-wetherbeei_contig53235:0..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53235 1..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53235.1.1prot_P-wetherbeei_contig53235.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53235 1..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53235.1.1

>prot_P-wetherbeei_contig53235.1.1 ID=prot_P-wetherbeei_contig53235.1.1|Name=mRNA_P-wetherbeei_contig53235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
GVWQDSNARLQFPLKRVGRKGGNDFVRISWDEALATVAERMRAAIDGHGP
QSILHTHYSGTLSLIGYMFPNRLFNHLGASEVDPDSICNAAGHVAWTLLF
GSSIQGFDPRAARDTNCILVWGANPSHSAPHAHEHWLKETPGKVVVVDPL
RTETAAAADLHLQPRPGTDAALAFSLLHCL
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mRNA from alignment at P-wetherbeei_contig53235:1..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53235.1.1 ID=mRNA_P-wetherbeei_contig53235.1.1|Name=mRNA_P-wetherbeei_contig53235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig53235:1..540+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGTGTGGCAGGACAGCAATGCACGCTTGCAATTTCCGCTCAAGCGGGT CGGGCGCAAGGGTGGCAACGACTTCGTGCGGATTTCCTGGGACGAAGCGC TCGCCACTGTCGCCGAACGCATGCGTGCCGCCATCGACGGCCACGGCCCG CAGTCCATCCTGCACACTCACTACTCGGGCACACTGTCGCTGATCGGGTA TATGTTCCCCAATCGACTGTTCAATCACCTCGGTGCCTCGGAAGTCGATC CGGACAGCATCTGCAATGCCGCCGGCCATGTGGCCTGGACCCTGCTTTTC GGTAGTTCCATTCAAGGTTTCGATCCGCGCGCGGCGCGCGACACCAATTG CATTCTGGTGTGGGGCGCGAACCCGTCTCACTCGGCGCCTCACGCCCACG AACATTGGCTTAAGGAAACGCCGGGCAAAGTCGTGGTGGTCGACCCGCTG CGCACTGAAACCGCTGCGGCGGCCGATCTGCATCTGCAGCCGCGTCCCGG CACCGATGCCGCGCTGGCCTTCAGCCTGCTGCATTGCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53235:1..540+

>mRNA_P-wetherbeei_contig53235.1.1 ID=mRNA_P-wetherbeei_contig53235.1.1|Name=mRNA_P-wetherbeei_contig53235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig53235:1..540+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGTGTGGCAGGACAGCAATGCACGCTTGCAATTTCCGCTCAAGCGGGT
CGGGCGCAAGGGTGGCAACGACTTCGTGCGGATTTCCTGGGACGAAGCGC
TCGCCACTGTCGCCGAACGCATGCGTGCCGCCATCGACGGCCACGGCCCG
CAGTCCATCCTGCACACTCACTACTCGGGCACACTGTCGCTGATCGGGTA
TATGTTCCCCAATCGACTGTTCAATCACCTCGGTGCCTCGGAAGTCGATC
CGGACAGCATCTGCAATGCCGCCGGCCATGTGGCCTGGACCCTGCTTTTC
GGTAGTTCCATTCAAGGTTTCGATCCGCGCGCGGCGCGCGACACCAATTG
CATTCTGGTGTGGGGCGCGAACCCGTCTCACTCGGCGCCTCACGCCCACG
AACATTGGCTTAAGGAAACGCCGGGCAAAGTCGTGGTGGTCGACCCGCTG
CGCACTGAAACCGCTGCGGCGGCCGATCTGCATCTGCAGCCGCGTCCCGG
CACCGATGCCGCGCTGGCCTTCAGCCTGCTGCATTGCCTG
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