mRNA_P-wetherbeei_contig12384.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12384.2.1
Unique NamemRNA_P-wetherbeei_contig12384.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12384.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12384contigP-wetherbeei_contig12384:1728..1997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionDimerization-anchoring domain of cAMP-dependent protein kinase, regulatory subunit
Ec32 orthologEc-11_001900.1
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.3199549-UTR-P-wetherbeei_contig12384:1727..17481683185947.3199549-UTR-P-wetherbeei_contig12384:1727..1748Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12384 1728..1748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.3399265-CDS-P-wetherbeei_contig12384:1748..18161683185947.3399265-CDS-P-wetherbeei_contig12384:1748..1816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12384 1749..1816 +
1683185947.3484678-CDS-P-wetherbeei_contig12384:1960..19971683185947.3484678-CDS-P-wetherbeei_contig12384:1960..1997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12384 1961..1997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12384.2.1prot_P-wetherbeei_contig12384.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12384 1749..1997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12384.2.1

>prot_P-wetherbeei_contig12384.2.1 ID=prot_P-wetherbeei_contig12384.2.1|Name=mRNA_P-wetherbeei_contig12384.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=35bp
MESMALYAESVDLQGMLQHYLKRVLLERPGDPLLF
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mRNA from alignment at P-wetherbeei_contig12384:1728..1997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12384.2.1 ID=mRNA_P-wetherbeei_contig12384.2.1|Name=mRNA_P-wetherbeei_contig12384.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig12384:1728..1997+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCCGCCGAATGATGTGCTAATGGAAAGCATGGCGCTTTACGCAGAGAG
CGTAGACCTGCAGGGGATGCTTCAGCATTACTTGAAGAGGTGAGGCTTAC
GCGCAGTTATTCTCATAGGTGCCTGCCTCTTCTTCTCCCGAGACATATTT
TCTTTCTCCCTTCGTTGGTGTCACGCTTGGCCTTATATAAGCGTGCCCTC
TTGGTGGTCCTCCTTTCATCAACTACCACACAGAGTGCTGCTCGAGAGGC
CCGGGGACCCCCTGCTCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12384:1728..1997+

>mRNA_P-wetherbeei_contig12384.2.1 ID=mRNA_P-wetherbeei_contig12384.2.1|Name=mRNA_P-wetherbeei_contig12384.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=105bp|location=Sequence derived from alignment at P-wetherbeei_contig12384:1728..1997+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAGCATGGCGCTTTACGCAGAGAGCGTAGACCTGCAGGGGATGCT
TCAGCATTACTTGAAGAGAGTGCTGCTCGAGAGGCCCGGGGACCCCCTGC
TCTTC
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