mRNA_P-wetherbeei_contig53123.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53123.1.1
Unique NamemRNA_P-wetherbeei_contig53123.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI0017F002E7 (Helix-turn-helix domain-containing protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017F002E7)

HSP 1 Score: 62.8 bits (151), Expect = 3.940e-12
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1
Query:   37 MTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            MTP E A +LKVS+SWLAKAR RG+GPP+I++GRSIRY
Sbjct:    1 MTPKEFARLLKVSVSWLAKARQRGEGPPFIQLGRSIRY 38          
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI001BAB59E9 (helix-turn-helix domain-containing protein n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0177 TaxID=2807665 RepID=UPI001BAB59E9)

HSP 1 Score: 61.2 bits (147), Expect = 3.680e-11
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 PSAKPPAA---IATLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            PS  PP+A   I  L+TP +AA  L +S+SWLAK R+ GDGPPYI++G ++RY
Sbjct:    8 PSGSPPSAPAVITLLLTPKQAARALNLSVSWLAKRRLAGDGPPYIKLGGAVRY 60          
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: A3WYB9_9BRAD (Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A TaxID=314253 RepID=A3WYB9_9BRAD)

HSP 1 Score: 58.9 bits (141), Expect = 1.990e-10
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            ++TP E A   KVSLSWLAKAR RGDGP ++R GRS+RY
Sbjct:   18 MLTPKEFAEAQKVSLSWLAKARKRGDGPSFVRFGRSVRY 56          
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI0004B14D34 (helix-turn-helix domain-containing protein n=1 Tax=Bradyrhizobium japonicum TaxID=375 RepID=UPI0004B14D34)

HSP 1 Score: 59.3 bits (142), Expect = 2.120e-10
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 PSAKPPAAIATLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            P+A  P A   L+TP +AA  L +S+SWLAK R+ GDGPPY+++G ++RY
Sbjct:   12 PAANRPTAAPILLTPKQAARHLNLSVSWLAKRRLAGDGPPYVKLGGAVRY 61          
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: A0A3C0BWV6_9HYPH (DNA-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3C0BWV6_9HYPH)

HSP 1 Score: 55.5 bits (132), Expect = 6.090e-9
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            L+TP EAA VLK S S+LAKARMRGDGP Y ++ RS+RY
Sbjct:   21 LLTPKEAAQVLKSSESFLAKARMRGDGPRYRKLSRSVRY 59          
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: B6JJF5_AFIC5 (HTH_17 domain-containing protein n=1 Tax=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) TaxID=504832 RepID=B6JJF5_AFIC5)

HSP 1 Score: 55.1 bits (131), Expect = 1.020e-8
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 PSAKPPAAIA----TLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            PS  PP+A+      L+T  EAA +L +S+SWLAK R+ GDGP YI++G ++RY
Sbjct:    8 PSGTPPSALPQANPVLLTSKEAARLLNLSVSWLAKRRLAGDGPAYIKMGGAVRY 61          
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: A0A2T7TUL9_9HYPH (HTH_17 domain-containing protein n=1 Tax=Microvirga sp. KLBC 81 TaxID=1862707 RepID=A0A2T7TUL9_9HYPH)

HSP 1 Score: 54.7 bits (130), Expect = 1.040e-8
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            LMT  EAA  LKVS S+LAKARM+G GP Y+R+GR+IRY
Sbjct:    9 LMTTKEAAQRLKVSASFLAKARMKGTGPRYLRLGRAIRY 47          
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI00194F3A7C (hypothetical protein n=1 Tax=Microvirga sp. BT689 TaxID=2778731 RepID=UPI00194F3A7C)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-8
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            + TP+EAA  LKVS+S+LAKARM G GP +IR GR+IRY
Sbjct:    8 VFTPSEAARELKVSISFLAKARMNGTGPTFIRCGRAIRY 46          
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: A0A7Y6T9Q4_9BRAD (Helix-turn-helix domain-containing protein n=1 Tax=Bradyrhizobium septentrionale TaxID=1404411 RepID=A0A7Y6T9Q4_9BRAD)

HSP 1 Score: 53.5 bits (127), Expect = 3.200e-8
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            L+TP++AA  LK+S SWLAKAR+ G+GPPY ++G  +RY
Sbjct:   13 LLTPDDAAAYLKLSKSWLAKARLNGNGPPYHKLGGCVRY 51          
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI0019861974 (Helix-turn-helix domain-containing protein n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019861974)

HSP 1 Score: 53.5 bits (127), Expect = 3.270e-8
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   31 TLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
            +L+TP EAA  L +S+SWLAK R+ GDGP YI+ G ++RY
Sbjct:   12 SLLTPKEAARYLNLSVSWLAKRRLAGDGPIYIKTGGAVRY 51          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
UPI0017F002E73.940e-1273.68Helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001BAB59E93.680e-1154.72helix-turn-helix domain-containing protein n=1 Tax... [more]
A3WYB9_9BRAD1.990e-1066.67Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb... [more]
UPI0004B14D342.120e-1052.00helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A3C0BWV6_9HYPH6.090e-969.23DNA-binding protein n=1 Tax=Hyphomicrobiales bacte... [more]
B6JJF5_AFIC51.020e-850.00HTH_17 domain-containing protein n=1 Tax=Afipia ca... [more]
A0A2T7TUL9_9HYPH1.040e-869.23HTH_17 domain-containing protein n=1 Tax=Microvirg... [more]
UPI00194F3A7C1.450e-866.67hypothetical protein n=1 Tax=Microvirga sp. BT689 ... [more]
A0A7Y6T9Q4_9BRAD3.200e-858.97Helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI00198619743.270e-857.50Helix-turn-helix domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53123contigP-wetherbeei_contig53123:390..539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog504832.OCAR_7446
PFAMsHTH_17
Model size150
Max annot lvl2|Bacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.67e-09
EggNOG OGsCOG3311@1|root,COG3311@2|Bacteria
DescriptionDNA excision
Cds size150
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.7321613-CDS-P-wetherbeei_contig53123:389..5391683186795.7321613-CDS-P-wetherbeei_contig53123:389..539Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53123 390..539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53123.1.1prot_P-wetherbeei_contig53123.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53123 390..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53123.1.1

>prot_P-wetherbeei_contig53123.1.1 ID=prot_P-wetherbeei_contig53123.1.1|Name=mRNA_P-wetherbeei_contig53123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=50bp
PSAKPPAAIATLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY
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mRNA from alignment at P-wetherbeei_contig53123:390..539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53123.1.1 ID=mRNA_P-wetherbeei_contig53123.1.1|Name=mRNA_P-wetherbeei_contig53123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig53123:390..539+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTCGGCGAAGCCGCCCGCCGCGATCGCCACCTTGATGACGCCGAACGA AGCCGCGAACGTCCTCAAGGTCAGCCTCTCCTGGCTCGCCAAGGCGCGGA TGCGCGGTGACGGCCCACCCTATATCCGCGTCGGCCGCTCGATCCGCTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53123:390..539+

>mRNA_P-wetherbeei_contig53123.1.1 ID=mRNA_P-wetherbeei_contig53123.1.1|Name=mRNA_P-wetherbeei_contig53123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig53123:390..539+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTCGGCGAAGCCGCCCGCCGCGATCGCCACCTTGATGACGCCGAACGA
AGCCGCGAACGTCCTCAAGGTCAGCCTCTCCTGGCTCGCCAAGGCGCGGA
TGCGCGGTGACGGCCCACCCTATATCCGCGTCGGCCGCTCGATCCGCTAT
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