mRNA_P-wetherbeei_contig53095.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53095.1.1
Unique NamemRNA_P-wetherbeei_contig53095.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A2E2HFJ7_9GAMM (Cyclic nucleotide-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E2HFJ7_9GAMM)

HSP 1 Score: 190 bits (483), Expect = 2.260e-59
Identity = 91/131 (69.47%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    1 EDIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFME 393
            +D+++LT+FMQ Y  EA   +IREGDVDDYML II+GRV I+K DSHG  +PMT  GPG TLGEMSMIDGEPRFATC+AL+ TTFAVLSRDSMV+II+EEP  G+K+L+KL+T+LSQRLR TSS L+H++E
Sbjct:   55 DDVEKLTSFMQAYEVEAGTTIIREGDVDDYMLFIIEGRVNILKTDSHGERRPMTIAGPGTTLGEMSMIDGEPRFATCIALDATTFAVLSRDSMVKIIMEEPSFGSKILIKLITMLSQRLRSTSSELVHYLE 185          
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A2A5CBH4_9GAMM (Cyclic nucleotide-binding protein n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A2A5CBH4_9GAMM)

HSP 1 Score: 182 bits (461), Expect = 3.760e-56
Identity = 86/130 (66.15%), Postives = 110/130 (84.62%), Query Frame = 1
Query:    4 DIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFME 393
            D+++LT+FM  Y  EA   +IREGD+DDYML II+GRV I+K DS+G  +PMT  GPG TLGEMSMIDGEPRFA+C+AL+ TTFAVLSR+SMV+II+EEP  G+K+L+KL+T+LSQRLR TSS L+H++E
Sbjct:   47 DVEKLTSFMHAYEVEAGTTIIREGDIDDYMLFIIEGRVNILKTDSNGERRPMTIAGPGTTLGEMSMIDGEPRFASCIALDATTFAVLSRESMVEIIMEEPSFGSKILIKLITMLSQRLRSTSSELVHYLE 176          
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A7C2UM60_9PROT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UM60_9PROT)

HSP 1 Score: 168 bits (425), Expect = 1.040e-50
Identity = 84/131 (64.12%), Postives = 106/131 (80.92%), Query Frame = 1
Query:    1 EDIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFME 393
            +DI  L  +M++YRA    ++IREGD  D+MLLII+G V+I+K  + G  Q MT+VGPG TLGEMSMIDGEPRFATC+A  PTTFAVL+RD+M +IIL+ P LG+K+LVKLVT+LS RLRQTS+ LLHF+E
Sbjct:   48 DDIAVLADYMEVYRARPGDIIIREGDAGDFMLLIIEGDVDILKKGARGEQQHMTSVGPGMTLGEMSMIDGEPRFATCLATRPTTFAVLTRDNMAKIILDHPSLGSKILVKLVTMLSLRLRQTSARLLHFLE 178          
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A1F4CNR7_9PROT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4CNR7_9PROT)

HSP 1 Score: 167 bits (422), Expect = 1.860e-50
Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 EDIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFME 393
            +DI  L  +M +YRA+  QM+IREGD  D+MLLII+G V+IVK    G  Q MT+VGPG TLGEMSMIDGEPRFATC+A   T FAVL+RD+M +IIL+ P LG+K+LVKLVT+LS RLRQTS+ LLHFME
Sbjct:   33 DDIAILARYMDVYRAQPGQMIIREGDGGDFMLLIIEGEVDIVKKGIRGEQQHMTSVGPGMTLGEMSMIDGEPRFATCLATRSTVFAVLTRDNMAKIILDYPSLGSKILVKLVTMLSLRLRQTSAKLLHFME 163          
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A1F4E400_9PROT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4E400_9PROT)

HSP 1 Score: 162 bits (410), Expect = 1.240e-48
Identity = 80/131 (61.07%), Postives = 105/131 (80.15%), Query Frame = 1
Query:    1 EDIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFME 393
            +DI  L  ++ +YRA+  +++IREGDV D+MLL+I G V+I+K    G  Q MT+VGPG TLGEMSMIDGEPRFATC+A +PT FAVL+RD+M +IIL+ P LG+K+LVKLVT+LS RLRQTS+ LL ++E
Sbjct:   33 DDISVLAGYLDVYRAQPGEIIIREGDVGDFMLLVIDGDVDILKKGVRGEQQHMTSVGPGLTLGEMSMIDGEPRFATCLATKPTVFAVLTRDNMAKIILDHPSLGSKILVKLVTMLSLRLRQTSAKLLQYLE 163          
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A1F4BF57_9PROT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BF57_9PROT)

HSP 1 Score: 162 bits (409), Expect = 1.820e-48
Identity = 84/132 (63.64%), Postives = 103/132 (78.03%), Query Frame = 1
Query:    1 EDIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFMER 396
            EDI  L  +M ++RA+A + +IRE D  D+MLLII+G V+I K    G+ Q MT VGPG TLGEMSMIDGEPRFATC+A E TTFAVL RD M +IIL+ P LG+K+LVKLV++LSQRLRQTS+ LL +MER
Sbjct:   33 EDISVLAGYMDVHRAQAGETIIRENDGGDFMLLIIEGAVDIFKKGMAGDQQHMTNVGPGMTLGEMSMIDGEPRFATCIATERTTFAVLHRDDMAKIILDHPSLGSKILVKLVSMLSQRLRQTSARLLQYMER 164          
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A7X1P2V7_9PROT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P2V7_9PROT)

HSP 1 Score: 160 bits (405), Expect = 1.240e-47
Identity = 83/132 (62.88%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    1 EDIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFMER 396
            +DI  L  +M IY A+  Q +IREGD  D+MLL+I G V+I K ++ G  Q MT+VGPG TLGEMSMIDGEPRFATC+  + T FAVL+RD+M  IILE+P LGAK+L+KLVT+LSQRLRQTS+ LL  MER
Sbjct:   49 DDIGLLADYMAIYNAQPGQAIIREGDDGDFMLLVISGAVDIFKNNAQGERQLMTSVGPGMTLGEMSMIDGEPRFATCVVTDTTVFAVLTRDAMANIILEKPSLGAKILIKLVTMLSQRLRQTSARLLQTMER 180          
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A3N5WLT1_9PROT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WLT1_9PROT)

HSP 1 Score: 159 bits (403), Expect = 2.210e-47
Identity = 78/131 (59.54%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    1 EDIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFME 393
            EDI  L  +M +YRA+  +++IREGD  D+M+LI+ G ++I+K       Q MT+ GPG TLGEMSMIDGEPRFATCMA +PTTFAVL+RD+M +IIL+ PGLG+K+L+K+VT+LS RLRQTS+ LL  M+
Sbjct:   47 EDISILAGYMDVYRAQPGEIIIREGDDGDFMMLIVDGEIDILKKTYRAEQQHMTSAGPGMTLGEMSMIDGEPRFATCMASQPTTFAVLTRDNMAKIILDYPGLGSKILIKMVTMLSLRLRQTSARLLRVMD 177          
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A7C3JN55_9PROT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JN55_9PROT)

HSP 1 Score: 156 bits (395), Expect = 3.300e-46
Identity = 80/132 (60.61%), Postives = 104/132 (78.79%), Query Frame = 1
Query:    1 EDIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFMER 396
            EDI  L  +M +YRA+  +++IREGD  D+MLL+++G V+I+K  +    Q MTTVGPG TLGEMSMIDGEPRFA+C+A E T FAVL RD MV+IIL+ PGLG+K+LVKLV++LS RLR TS+ LL +ME+
Sbjct:   47 EDISVLAGYMDVYRAQPGEIIIREGDGGDFMLLVVEGYVDILKRSARQQ-QHMTTVGPGMTLGEMSMIDGEPRFASCVATEATVFAVLHRDDMVKIILDHPGLGSKILVKLVSMLSSRLRATSAKLLQYMEK 177          
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Match: A0A0S8C877_9PROT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C877_9PROT)

HSP 1 Score: 151 bits (381), Expect = 2.110e-44
Identity = 79/132 (59.85%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    1 EDIQRLTAFMQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPGATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLVKLVTLLSQRLRQTSSNLLHFMER 396
            EDI  L ++M +YRAEA + +IRE D  D+MLL+++G V+I K      +Q MTTVGPG TLGEMSMIDGEPRFA C+A E   FAVL RD M +IIL+ P LG+KVLVKLV++LS RLR TS  LL  ME+
Sbjct:   21 EDISILASYMDVYRAEAGRTIIRERDGGDFMLLVVEGYVDIYKRTMRHEMQHMTTVGPGMTLGEMSMIDGEPRFANCVATEAVVFAVLHRDDMAKIILDYPSLGSKVLVKLVSMLSARLRHTSGKLLQMMEK 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53095.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E2HFJ7_9GAMM2.260e-5969.47Cyclic nucleotide-binding protein n=1 Tax=Gammapro... [more]
A0A2A5CBH4_9GAMM3.760e-5666.15Cyclic nucleotide-binding protein n=1 Tax=SAR86 cl... [more]
A0A7C2UM60_9PROT1.040e-5064.12Cyclic nucleotide-binding domain-containing protei... [more]
A0A1F4CNR7_9PROT1.860e-5065.65Cyclic nucleotide-binding domain-containing protei... [more]
A0A1F4E400_9PROT1.240e-4861.07Cyclic nucleotide-binding domain-containing protei... [more]
A0A1F4BF57_9PROT1.820e-4863.64Cyclic nucleotide-binding domain-containing protei... [more]
A0A7X1P2V7_9PROT1.240e-4762.88Cyclic nucleotide-binding domain-containing protei... [more]
A0A3N5WLT1_9PROT2.210e-4759.54Cyclic nucleotide-binding domain-containing protei... [more]
A0A7C3JN55_9PROT3.300e-4660.61Cyclic nucleotide-binding domain-containing protei... [more]
A0A0S8C877_9PROT2.110e-4459.85Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53095contigP-wetherbeei_contig53095:142..540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog887898.HMPREF0551_1669
PFAMscNMP_binding
Model size399
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.22e-31
EggNOG OGsCOG0664@1|root,COG0664@2|Bacteria,1NBX3@1224|Proteobacteria,2VX3A@28216|Betaproteobacteria
DescriptionCyclic nucleotide-monophosphate binding domain
Cds size372
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.087155-CDS-P-wetherbeei_contig53095:141..5131683186795.087155-CDS-P-wetherbeei_contig53095:141..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53095 142..513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.0964894-UTR-P-wetherbeei_contig53095:513..5401683186795.0964894-UTR-P-wetherbeei_contig53095:513..540Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53095 514..540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53095.1.1prot_P-wetherbeei_contig53095.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53095 142..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53095.1.1

>prot_P-wetherbeei_contig53095.1.1 ID=prot_P-wetherbeei_contig53095.1.1|Name=mRNA_P-wetherbeei_contig53095.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MQIYRAEAAQMMIREGDVDDYMLLIIQGRVEIVKIDSHGNLQPMTTVGPG
ATLGEMSMIDGEPRFATCMALEPTTFAVLSRDSMVQIILEEPGLGAKVLV
KLVTLLSQRLRQTSSNLLHFMER*
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mRNA from alignment at P-wetherbeei_contig53095:142..540-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53095.1.1 ID=mRNA_P-wetherbeei_contig53095.1.1|Name=mRNA_P-wetherbeei_contig53095.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig53095:142..540- (Phaeothamnion wetherbeei SAG_119_79)
GAAGACATCCAGCGGCTGACGGCGTTCATGCAGATCTATCGCGCCGAAGC CGCGCAGATGATGATCCGCGAGGGCGACGTCGACGACTACATGCTGCTCA TCATCCAGGGGCGCGTGGAGATCGTGAAAATAGATTCTCACGGCAACCTG CAGCCGATGACCACGGTCGGACCCGGCGCGACGCTGGGAGAGATGTCGAT GATCGACGGCGAACCGCGCTTCGCGACCTGCATGGCGCTCGAGCCGACCA CGTTCGCAGTGTTGTCGCGCGACAGCATGGTGCAGATCATCCTCGAAGAA CCCGGCCTTGGCGCCAAGGTTCTGGTCAAGCTGGTGACCCTGCTGTCACA GCGCTTGCGCCAGACCAGTTCCAACCTTCTGCATTTCATGGAGCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53095:142..540-

>mRNA_P-wetherbeei_contig53095.1.1 ID=mRNA_P-wetherbeei_contig53095.1.1|Name=mRNA_P-wetherbeei_contig53095.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig53095:142..540- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGATCTATCGCGCCGAAGCCGCGCAGATGATGATCCGCGAGGGCGA
CGTCGACGACTACATGCTGCTCATCATCCAGGGGCGCGTGGAGATCGTGA
AAATAGATTCTCACGGCAACCTGCAGCCGATGACCACGGTCGGACCCGGC
GCGACGCTGGGAGAGATGTCGATGATCGACGGCGAACCGCGCTTCGCGAC
CTGCATGGCGCTCGAGCCGACCACGTTCGCAGTGTTGTCGCGCGACAGCA
TGGTGCAGATCATCCTCGAAGAACCCGGCCTTGGCGCCAAGGTTCTGGTC
AAGCTGGTGACCCTGCTGTCACAGCGCTTGCGCCAGACCAGTTCCAACCT
TCTGCATTTCATGGAGCGCTGA
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