mRNA_P-wetherbeei_contig53011.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53011.1.1
Unique NamemRNA_P-wetherbeei_contig53011.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: UPI0011B76D1D (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Vulcaniibacterium thermophilum TaxID=1169913 RepID=UPI0011B76D1D)

HSP 1 Score: 68.9 bits (167), Expect = 3.520e-11
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   46 SYTHLMSGQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLPAHVNHRAANSCGARVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            +YT + SG TL G+A   GV+ D+LL ANPQI +   I SG  +H+P     RA++       +   ++L  +A R GV+L ALL ANP +R+ +++ PG  + +P
Sbjct:  215 TYT-VRSGDTLSGIAERHGVSLDALLRANPQIRNPNLIHSGQSVHIPGGGAERASS-----YTVRAGDTLSGIAERHGVSLDALLRANPQIRNPNLIHPGQSVHIP 314          
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: A0A7Y2PLJ2_9THEO (SafA/ExsA family spore coat assembly protein n=5 Tax=Caldanaerobacter subterraneus TaxID=911092 RepID=A0A7Y2PLJ2_9THEO)

HSP 1 Score: 62.8 bits (151), Expect = 1.130e-9
Identity = 34/108 (31.48%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   40 CGSYTHLMSGQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLPAHVNHRAANSCGARVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            C +   +  G +L+ +A+  GV+ D L++ANPQI+D   I  G  I +P +    +  +C         +SL  +A   GV+L AL+ ANP ++D +++ PG  + +P
Sbjct:   78 CRTIYTVRPGDSLWSIANMFGVSLDCLIKANPQISDPNLIYPGQQICIPFYCPPPSPQTCRTIYTAKAGDSLWSIANMFGVSLEALIKANPQIKDPNLIYPGQQICIP 185          
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: A0A3B8JZ56_9FIRM (Uncharacterized protein (Fragment) n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3B8JZ56_9FIRM)

HSP 1 Score: 63.9 bits (154), Expect = 1.390e-9
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   58 LMSGQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLP-AHVNHRAANSCGARVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            +  G TL+ +A   GV+ D+L+ ANPQI +   I  G ++ +P AHV   A      RVV+ + ++L  +A R GV+L AL+ ANP ++D +++ PG ++ +P
Sbjct:  200 VQKGDTLFLIAKRFGVSLDALIRANPQIKNPNLIFPGDVVFIPQAHV---APKPGMKRVVVQKGDTLFLIAKRFGVSLDALIRANPQIKDPNLIFPGDIVFIP 299          
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: UPI00177B04E7 (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Luteimonas sp. Sa2BVA3 TaxID=2762230 RepID=UPI00177B04E7)

HSP 1 Score: 64.3 bits (155), Expect = 1.460e-9
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = 1
Query:   28 PHYGCGSYTHLMSGQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLPAHVNHRAANSCGARVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            P  G G    + SG TL G+A    V  D+LL ANPQI D   I  G ++ LP      A +     V +   +++  +A R GV+L ALL ANP + +  ++ PG V+ VP
Sbjct:  267 PGDGGGGEVTVRSGDTLSGIAARNDVGLDALLSANPQIRDPDLIHPGQVVRLPGGAGAGATHD----VTVRSGDTMSGIAARNGVSLPALLAANPQIGNPDLIHPGQVVHVP 374          
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: UPI001AFCE31F (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Dokdonella sp. TaxID=2291710 RepID=UPI001AFCE31F)

HSP 1 Score: 63.9 bits (154), Expect = 2.010e-9
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   43 GSYTHLMSGQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLPAHVNHRAANSCGARVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            GSYT + SG T+ G+A   GV+  +L+ ANPQI +   I  G  +H+P        N+ G    +   +++  +A + GV+L AL+ ANP +++ +++  G  + +P
Sbjct:  318 GSYT-VRSGDTMSGIAGRNGVSLSALIAANPQIKNANLIYPGQTVHIPGGSPSAGGNNGGGSYTVRNGDTMSGIAAQHGVSLSALISANPQIKNPNLIYSGQAVHIP 423          
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: E8USS8_THEBF (Spore coat assembly protein SafA n=9 Tax=Thermoanaerobacter TaxID=1754 RepID=E8USS8_THEBF)

HSP 1 Score: 61.2 bits (147), Expect = 2.010e-9
Identity = 31/108 (28.70%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   40 CGSYTHLMSGQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLPAHVNHRAANSCGARVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            C ++  +  G T++ +A+  G++ D L+ ANPQI+D   I  G  I +P +    +  +C     +   +++  +A   GV+L AL+ ANP + D +++ PG  + +P
Sbjct:   31 CKTFYTVQPGDTMWSIANMFGISLDCLIRANPQISDPNLIYPGQQICIPFYCPPVSPETCKTIYTVKPGDTMWSIANMFGVSLDALIRANPQIPDPNLIYPGQQICIP 138          
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: A0A7C6GBI8_9FIRM (SafA/ExsA family spore coat assembly protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6GBI8_9FIRM)

HSP 1 Score: 63.5 bits (153), Expect = 2.050e-9
Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    7 VPHARQAPHYGC--GSYTHLMS-GQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLPAHVNHRAANSC---GARVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            VP   Q P  GC   S+ +++  G T++ +A   GV+ D+L+ ANPQI +   I  G  I +P     R+  +C     R  +   +S+  +A R G++L AL+ ANP V + S++ PG  L +P
Sbjct:  191 VPTGTQPPPDGCPPNSFVYIVQPGDTMFLIAQRFGVSLDALIAANPQIPNPNQIRPGQRICVP-----RSPGACPPGSTRYTVQPGDSMFTIARRFGISLDALIRANPQVSNPSLIFPGQQLCIP 310          
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: A0A4R1RS59_9FIRM (Spore coat assembly protein SafA n=1 Tax=Hydrogenispora ethanolica TaxID=1082276 RepID=A0A4R1RS59_9FIRM)

HSP 1 Score: 63.2 bits (152), Expect = 3.530e-9
Identity = 36/117 (30.77%), Postives = 60/117 (51.28%), Query Frame = 1
Query:   13 HARQAPHYGCGSYTHLMSGQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLPAHVNHRAANSCGARVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            H   AP    G    + SG T++ +A    ++  SLL ANPQI+D   I  G +I +P     +A    GA   +   +++  +A R  ++L AL+ ANP + D +++ PG  + +P
Sbjct:   27 HRAAAPMCPNGQLYTVKSGDTMFFIAKRFNISLQSLLNANPQISDPNVIFPGQVICVPVGTPAQAVCPNGATYTVRSGDTMYEIARRNNISLAALIAANPQISDPNLIFPGQTICIP 143          
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: A0A7C6UQ28_9FIRM (SafA/ExsA family spore coat assembly protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6UQ28_9FIRM)

HSP 1 Score: 61.2 bits (147), Expect = 6.910e-9
Identity = 33/100 (33.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   67 GQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLPAHVNHRAANSCGA-RVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            G +++ +A   GV+ D+L+ ANPQI D   I  G ++ +P  +        G     + + +S+  +A R GVTL+AL+ ANP + + S ++PG ++ VP
Sbjct:   58 GDSMWSIARRFGVSLDALIAANPQIPDPSRIQPGQIVCVPTTMPPPGECPRGTFPYTVKQGDSMWLIAQRFGVTLNALIAANPQITNPSQIKPGQIVCVP 157          
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Match: A0A7C6RDS4_9FIRM (SafA/ExsA family spore coat assembly protein n=8 Tax=Clostridia TaxID=186801 RepID=A0A7C6RDS4_9FIRM)

HSP 1 Score: 60.8 bits (146), Expect = 7.450e-9
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   40 CGSYTHLMSGQTLYGLAHACGVAFDSLLEANPQITDIRNISSGALIHLPAHVNHRAANSCGARVVLHESESLEHLAWRCGVTLHALLLANPSVRDVSMLRPGLVLAVP 363
            C +   +  G +++ +A+  GV+ D L+ ANPQI+D   I  G  I +P +    +  +C A   +   +S+  +A   GV+L AL+ ANP + D +++ PG  + +P
Sbjct:   90 CKTIYTVKPGDSMWSIANMFGVSLDCLIRANPQISDPNLIYPGQQICIPFYCPPVSPETCKAIYTVKPGDSMWSIANMFGVSLDALIRANPQIPDPNLIYPGQQICIP 197          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53011.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0011B76D1D3.520e-1138.68LysM peptidoglycan-binding domain-containing prote... [more]
A0A7Y2PLJ2_9THEO1.130e-931.48SafA/ExsA family spore coat assembly protein n=5 T... [more]
A0A3B8JZ56_9FIRM1.390e-936.89Uncharacterized protein (Fragment) n=1 Tax=Firmicu... [more]
UPI00177B04E71.460e-936.61LysM peptidoglycan-binding domain-containing prote... [more]
UPI001AFCE31F2.010e-931.78LysM peptidoglycan-binding domain-containing prote... [more]
E8USS8_THEBF2.010e-928.70Spore coat assembly protein SafA n=9 Tax=Thermoana... [more]
A0A7C6GBI8_9FIRM2.050e-933.60SafA/ExsA family spore coat assembly protein n=1 T... [more]
A0A4R1RS59_9FIRM3.530e-930.77Spore coat assembly protein SafA n=1 Tax=Hydrogeni... [more]
A0A7C6UQ28_9FIRM6.910e-933.00SafA/ExsA family spore coat assembly protein n=1 T... [more]
A0A7C6RDS4_9FIRM7.450e-930.56SafA/ExsA family spore coat assembly protein n=8 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53011contigP-wetherbeei_contig53011:29..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog935948.KE386494_gene656
PFAMsLysM
Model size363
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.82e-10
EggNOG OGsCOG1388@1|root,COG1388@2|Bacteria,1V10C@1239|Firmicutes,25BB9@186801|Clostridia,42G9S@68295|Thermoanaerobacterales
DescriptionLysin motif
Cds size363
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.3334832-CDS-P-wetherbeei_contig53011:28..3911683186794.3334832-CDS-P-wetherbeei_contig53011:28..391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53011 29..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53011.1.1prot_P-wetherbeei_contig53011.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53011 29..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53011.1.1

>prot_P-wetherbeei_contig53011.1.1 ID=prot_P-wetherbeei_contig53011.1.1|Name=mRNA_P-wetherbeei_contig53011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
AAVPHARQAPHYGCGSYTHLMSGQTLYGLAHACGVAFDSLLEANPQITDI
RNISSGALIHLPAHVNHRAANSCGARVVLHESESLEHLAWRCGVTLHALL
LANPSVRDVSMLRPGLVLAVP
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mRNA from alignment at P-wetherbeei_contig53011:29..391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53011.1.1 ID=mRNA_P-wetherbeei_contig53011.1.1|Name=mRNA_P-wetherbeei_contig53011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig53011:29..391+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCGTGCCACATGCACGACAGGCTCCGCACTATGGCTGTGGGTCCTA CACACATCTTATGAGTGGCCAGACGCTTTACGGACTCGCGCATGCATGTG GCGTTGCGTTTGATTCCTTGTTGGAAGCCAATCCCCAAATCACTGATATT CGAAATATATCGTCTGGCGCGTTGATCCACCTTCCGGCTCACGTCAACCA TCGTGCCGCCAATTCGTGCGGCGCGCGGGTTGTTCTCCATGAAAGTGAAT CGCTGGAGCATCTGGCCTGGCGTTGCGGTGTGACTCTGCATGCGCTGTTG CTGGCAAATCCTTCCGTGCGCGACGTCTCGATGCTTCGACCCGGCCTTGT GCTGGCTGTCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53011:29..391+

>mRNA_P-wetherbeei_contig53011.1.1 ID=mRNA_P-wetherbeei_contig53011.1.1|Name=mRNA_P-wetherbeei_contig53011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig53011:29..391+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCGTGCCACATGCACGACAGGCTCCGCACTATGGCTGTGGGTCCTA
CACACATCTTATGAGTGGCCAGACGCTTTACGGACTCGCGCATGCATGTG
GCGTTGCGTTTGATTCCTTGTTGGAAGCCAATCCCCAAATCACTGATATT
CGAAATATATCGTCTGGCGCGTTGATCCACCTTCCGGCTCACGTCAACCA
TCGTGCCGCCAATTCGTGCGGCGCGCGGGTTGTTCTCCATGAAAGTGAAT
CGCTGGAGCATCTGGCCTGGCGTTGCGGTGTGACTCTGCATGCGCTGTTG
CTGGCAAATCCTTCCGTGCGCGACGTCTCGATGCTTCGACCCGGCCTTGT
GCTGGCTGTCCCC
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