mRNA_P-wetherbeei_contig5300.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5300.5.1
Unique NamemRNA_P-wetherbeei_contig5300.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5300.5.1 vs. uniprot
Match: A0A6H5L4E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.220e-28
Identity = 91/205 (44.39%), Postives = 122/205 (59.51%), Query Frame = 1 
Query:  148 VPLRYLPESHPAAVRIQTWWRCRIAVKRCQQQRALRVWAATKIQSLFRMRRGRRVYRKQRRVAEIRQRVREDKEAELMAVEDARSRAHRKDQSALRTIERAIFGYLGRQKALQKRRERQLAKAQARVQEKLAALERYQREQALLAVRRLEKDRWAAKLQAFWRGVLARRRCARIMAERCRGTAVTRIQLMCRYRSARLDAAARRR 762
            V + + PE  PAAV IQ  WR   A K  +++R  R WAA K+QS FR RR RR++ KQ R   IR  VRE+KEA+ MAV D  S    K + AL T+ R + GY GR+ A ++RR+ +L +A  R  E+  AL R++  Q  L V R ++   A  +QA +R  LAR+R A I  +  R  A T IQ M R+R AR +AAAR+R
Sbjct:   38 VAVEHPPEWDPAAVSIQAAWRGYSARKAYEEERVTRQWAAVKVQSCFRARRARRLFNKQMRYKHIRDMVREEKEADEMAVHDRESLRLMKYERALCTLGRVLLGYKGRKIARERRRQLRLEEAGKRFAEREEALRRHEETQRRLEVLRKDEKLAATIIQAVYRSRLARKRVALIREDNRRTRAATMIQQMIRFRGARHEAAARKR 242
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5300.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4E1_9PHAE6.220e-2844.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5300contigP-wetherbeei_contig5300:1986..3051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQA7
Preferred nameFBXO39
PFAMsF-box-like,IQ,LRR_6,MORN
Model size783
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939,ko:K10314
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0030163,GO:0031146,GO:0031461,GO:0032991,GO:0043087,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0051603,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons2
Evalue5.43e-29
EggNOG OGsCOG4642@1|root,KOG1032@1|root,KOG1947@1|root,KOG0231@2759|Eukaryota,KOG1032@2759|Eukaryota,KOG1947@2759|Eukaryota
EC2.7.4.3
DescriptionF-box LRR-repeat protein
Cds size780
COG categoryB
BRITEko00000,ko00001,ko00002,ko01000,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.0950577-CDS-P-wetherbeei_contig5300:1986..21961683186794.0950577-CDS-P-wetherbeei_contig5300:1986..2196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5300 1987..2196 -
1683186794.1109743-CDS-P-wetherbeei_contig5300:2481..30511683186794.1109743-CDS-P-wetherbeei_contig5300:2481..3051Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5300 2482..3051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5300.5.1prot_P-wetherbeei_contig5300.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5300 1987..3051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5300.5.1

>prot_P-wetherbeei_contig5300.5.1 ID=prot_P-wetherbeei_contig5300.5.1|Name=mRNA_P-wetherbeei_contig5300.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
VVAAAAVADAEAPALRSAEDATRAATAAADTAAIDAAAAAKAAAAAAKAV
PLRYLPESHPAAVRIQTWWRCRIAVKRCQQQRALRVWAATKIQSLFRMRR
GRRVYRKQRRVAEIRQRVREDKEAELMAVEDARSRAHRKDQSALRTIERA
IFGYLGRQKALQKRRERQLAKAQARVQEKLAALERYQREQALLAVRRLEK
DRWAAKLQAFWRGVLARRRCARIMAERCRGTAVTRIQLMCRYRSARLDAA
ARRREAARVR
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mRNA from alignment at P-wetherbeei_contig5300:1986..3051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5300.5.1 ID=mRNA_P-wetherbeei_contig5300.5.1|Name=mRNA_P-wetherbeei_contig5300.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1066bp|location=Sequence derived from alignment at P-wetherbeei_contig5300:1986..3051- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTGGCCGCGGCGGCAGTGGCAGACGCGGAAGCGCCCGCTCTGCGGAG
CGCCGAAGATGCTACGCGGGCCGCCACCGCCGCTGCGGATACTGCCGCCA
TCGACGCCGCTGCGGCCGCCAAAGCCGCAGCCGCCGCCGCCAAGGCCGTC
CCGCTGCGGTACCTCCCGGAGAGTCACCCGGCCGCCGTGCGGATCCAGAC
GTGGTGGCGCTGCCGCATTGCCGTCAAGCGCTGCCAGCAGCAGCGTGCGC
TGCGCGTTTGGGCGGCCACCAAGATCCAGTCGTTGTTCCGGATGCGCCGA
GGCCGCCGCGTCTACCGGAAACAGCGGCGGGTCGCGGAGATCCGGCAGCG
GGTGCGGGAGGACAAGGAAGCGGAGCTGATGGCCGTGGAGGACGCACGGA
GCCGCGCGCACCGCAAGGACCAATCGGCGCTGCGAACCATCGAGCGGGCG
ATATTCGGGTATTTGGGGCGCCAGAAGGCGCTTCAGAAGCGACGGGAGCG
GCAGCTAGCGAAGGCGCAGGCGCGGGTGCAGGAGAAGCTGGCGGCGCTAG
AGCGCTACCAGCGCGAGCAGGTGAGAGTATGGCAGAGGACAGCTTTTGTT
TTCCGGCGTGGCTTTTCTTGCTTCTTTTCTTTGCTAAAAACGAAGGCTGG
GCTGTGTGCTTTTTCTAGAAAGTTTCTGGTATCGCCTCGTCGATATAGCT
TTGAACATGTCGTTGACTTGAGGTGGTGGCAACACACGTTTTCAAATTCT
CCGGCACTGACATGGCTCTCTCGTTCGAATGGAGCGTGACCATTTATCTT
CGAAACTTTCGTCCATTCCTCTACCTGCATCCAAAAAACAACAACACGCC
CCCAGGCGCTGCTGGCGGTGCGGCGGCTGGAGAAGGACCGGTGGGCCGCC
AAGCTGCAGGCCTTCTGGCGCGGCGTCCTCGCCCGCCGCCGCTGCGCCCG
CATCATGGCAGAGCGCTGCCGCGGAACCGCCGTCACGCGCATCCAGCTTA
TGTGCCGCTACCGCTCCGCCCGCCTCGACGCAGCGGCGCGGCGGCGTGAG
GCAGCGCGCGTCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5300:1986..3051-

>mRNA_P-wetherbeei_contig5300.5.1 ID=mRNA_P-wetherbeei_contig5300.5.1|Name=mRNA_P-wetherbeei_contig5300.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig5300:1986..3051- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTGGCCGCGGCGGCAGTGGCAGACGCGGAAGCGCCCGCTCTGCGGAG
CGCCGAAGATGCTACGCGGGCCGCCACCGCCGCTGCGGATACTGCCGCCA
TCGACGCCGCTGCGGCCGCCAAAGCCGCAGCCGCCGCCGCCAAGGCCGTC
CCGCTGCGGTACCTCCCGGAGAGTCACCCGGCCGCCGTGCGGATCCAGAC
GTGGTGGCGCTGCCGCATTGCCGTCAAGCGCTGCCAGCAGCAGCGTGCGC
TGCGCGTTTGGGCGGCCACCAAGATCCAGTCGTTGTTCCGGATGCGCCGA
GGCCGCCGCGTCTACCGGAAACAGCGGCGGGTCGCGGAGATCCGGCAGCG
GGTGCGGGAGGACAAGGAAGCGGAGCTGATGGCCGTGGAGGACGCACGGA
GCCGCGCGCACCGCAAGGACCAATCGGCGCTGCGAACCATCGAGCGGGCG
ATATTCGGGTATTTGGGGCGCCAGAAGGCGCTTCAGAAGCGACGGGAGCG
GCAGCTAGCGAAGGCGCAGGCGCGGGTGCAGGAGAAGCTGGCGGCGCTAG
AGCGCTACCAGCGCGAGCAGGCGCTGCTGGCGGTGCGGCGGCTGGAGAAG
GACCGGTGGGCCGCCAAGCTGCAGGCCTTCTGGCGCGGCGTCCTCGCCCG
CCGCCGCTGCGCCCGCATCATGGCAGAGCGCTGCCGCGGAACCGCCGTCA
CGCGCATCCAGCTTATGTGCCGCTACCGCTCCGCCCGCCTCGACGCAGCG
GCGCGGCGGCGTGAGGCAGCGCGCGTCCGG
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