mRNA_P-wetherbeei_contig52917.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52917.1.1
Unique NamemRNA_P-wetherbeei_contig52917.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: UPI001933EA3A (class I SAM-dependent methyltransferase n=1 Tax=Steroidobacter gossypii TaxID=2805490 RepID=UPI001933EA3A)

HSP 1 Score: 151 bits (381), Expect = 5.390e-43
Identity = 74/124 (59.68%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRKPG 372
            P S+DAALFVMSYHD+++  +    P  D AQ +  L +ALKPG  VVV DH A AGAD +E+V+ LHRIDPA +KR FE AG  FDA+   F N  DDH+K VFDPAIRHKTDQ ++RFRKP 
Sbjct:  154 PNSVDAALFVMSYHDLHWKAKDGSWPNTDPAQALARLVSALKPGATVVVLDHAAAAGADPAESVDTLHRIDPAIIKRDFEAAGLTFDAESKAFANAEDDHTKPVFDPAIRHKTDQVMYRFRKPA 277          
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: UPI00101CA90E (class I SAM-dependent methyltransferase n=1 Tax=Steroidobacter soli TaxID=2497877 RepID=UPI00101CA90E)

HSP 1 Score: 150 bits (378), Expect = 1.600e-42
Identity = 73/124 (58.87%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRKPG 372
            P SLDAALFVMSYHD+++  +    P  D AQ +  L  ALKPG  VVV DHVA+AGAD + +V+ LHRIDPA +KR F  AG  F+A+   F N  DDH+K VFDPA+RHKTDQ ++RFRKPG
Sbjct:  156 PNSLDAALFVMSYHDLHWKAKDGSWPNTDPAQALAKLAPALKPGAAVVVLDHVAVAGADPAVSVDALHRIDPAVIKRDFAAAGLTFEAESKAFANAEDDHTKPVFDPAVRHKTDQVMYRFRKPG 279          
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: A0A3N5L4H9_9GAMM (Methyltransferase domain-containing protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5L4H9_9GAMM)

HSP 1 Score: 147 bits (371), Expect = 1.100e-41
Identity = 72/124 (58.06%), Postives = 89/124 (71.77%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRKPG 372
            P SLDAALFVMSYHD+Y+ P     P  D A ++  L  ALKPG VVVVQDHVA    D+S+ V +LHRI P+ V+R FE+AGF F+A+ +      DDH+K VFDPAIR K+DQFV+RFR+PG
Sbjct:  136 PASLDAALFVMSYHDLYWRPSDGSWPPTDPAVLLAKLHAALKPGAVVVVQDHVAATDGDTSKLVGELHRIHPSVVRRDFERAGFAFEAESEVLARKDDDHTKPVFDPAIRGKSDQFVYRFRRPG 259          
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: A0A829Y4E5_9GAMM (Methyltransferase n=2 Tax=Steroidobacter TaxID=469322 RepID=A0A829Y4E5_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 3.700e-41
Identity = 72/124 (58.06%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRKPG 372
            P SLDAALFVMSYHD+++  +    P  D AQ +  L  ALKPG  VVV DHVA AGAD + +V+ LHR+DPA +KR FE AG  FDA+   F N  DDH+K VFDPA+RHKTDQ ++RF+KP 
Sbjct:  157 PNSLDAALFVMSYHDLHWKAKDGSWPNTDPAQALAKLVPALKPGATVVVLDHVAAAGADPAVSVDALHRMDPAIIKRDFETAGLTFDAESKAFANVEDDHTKPVFDPAVRHKTDQVMYRFKKPS 280          
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: UPI000E323D7E (class I SAM-dependent methyltransferase n=1 Tax=Steroidobacter cummioxidans TaxID=1803913 RepID=UPI000E323D7E)

HSP 1 Score: 143 bits (360), Expect = 7.520e-40
Identity = 71/122 (58.20%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRK 366
            P +LDAALFVMSYHD+++  +    P  D AQ +  L  ALKPG  VVV DHVA AGAD + +V+ LHRIDPA +KR FE AG  F+A    F N  DDH+K VFDPA+RHKTDQ ++RFRK
Sbjct:  153 PNTLDAALFVMSYHDLHWKAKDGSWPNTDPAQALAKLVPALKPGASVVVVDHVAAAGADPATSVDALHRIDPAIIKRDFEAAGLTFEADSKAFANAEDDHTKPVFDPAVRHKTDQVMYRFRK 274          
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: A0A841HIE8_9GAMM (Putative methyltransferase n=1 Tax=Povalibacter uvarum TaxID=732238 RepID=A0A841HIE8_9GAMM)

HSP 1 Score: 139 bits (349), Expect = 3.040e-38
Identity = 70/123 (56.91%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRKP 369
            P SLDAALFV SYHD+++  +       D A+ +  L TALKPG +VVV DHVA+AG+D +  V+ LHRIDPA V++ FE AG  FDA+     N +DDH+K VFD +IRHKTDQFV+RFRKP
Sbjct:  152 PGSLDAALFVQSYHDLHWKSKDWSPT--DPAKSLAALVTALKPGAIVVVVDHVAVAGSDPAVVVDSLHRIDPALVRKDFEAAGLVFDAESSILANSADDHTKSVFDESIRHKTDQFVYRFRKP 272          
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: A0A239BXM1_9SPHN (Predicted methyltransferase n=1 Tax=Sphingomonas laterariae TaxID=861865 RepID=A0A239BXM1_9SPHN)

HSP 1 Score: 131 bits (330), Expect = 1.310e-35
Identity = 66/124 (53.23%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRKPG 372
            P   D AL  + YHD Y+  E    P  D  Q +  L+ A+KPGGVV V DH A AG D+   V+KLHRIDPA VK  F++AGF  + + D    G DDH+K VFDPA+R KTD+FVFRFRKPG
Sbjct:  129 PADFDFALIHLEYHDFYWESEKYHYPRVDPDQALKRLYAAMKPGGVVGVVDHAADAGGDTRAVVDKLHRIDPAVVKADFQRAGFVLEGESDLLMTGQDDHAKEVFDPAVRGKTDRFVFRFRKPG 252          
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: A0A2W5A9Q6_9SPHN (Methyltransferase n=1 Tax=Sphingomonas sanxanigenens TaxID=397260 RepID=A0A2W5A9Q6_9SPHN)

HSP 1 Score: 130 bits (326), Expect = 4.850e-35
Identity = 66/124 (53.23%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRKPG 372
            P SLD  L+ ++YHD+Y++ E  K P  D A  +  LF A+KPGG+V V DHV  AG D+   V+KLHRIDP  VK  F +AGF+   +    R G DDHSKLVFDPA+R KTD+F+ +FRKPG
Sbjct:  127 PNSLDFVLYHLAYHDLYWSSEKYKIPQIDPADSLKTLFAAVKPGGIVGVVDHVGPAG-DTRAVVDKLHRIDPEVVKADFRRAGFELVGESPLLRVGGDDHSKLVFDPAVRGKTDRFILKFRKPG 249          
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: A0A437M6Y5_9SPHN (Methyltransferase domain-containing protein n=1 Tax=Sphingomonas crocodyli TaxID=1979270 RepID=A0A437M6Y5_9SPHN)

HSP 1 Score: 130 bits (326), Expect = 5.100e-35
Identity = 65/124 (52.42%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRKPG 372
            P S D AL  + YHD Y+  E    P  D    +  L+ A++PGGVV V DHVA AG D    V+KLHRIDPA VK  F++AGF  D + +    G+DDH+KLVFDPA+R KTD+FVFRF+KP 
Sbjct:  128 PASFDFALLHLEYHDFYWQSEQYHYPRTDPDDALKRLYAAMRPGGVVGVVDHVADAGGDVRTVVDKLHRIDPAIVKADFQRAGFVLDGESNALMTGADDHAKLVFDPAVRGKTDRFVFRFKKPA 251          
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Match: A0A258S8R4_9SPHN (Methyltransferase n=1 Tax=Sphingomonas sp. 28-62-20 TaxID=1970433 RepID=A0A258S8R4_9SPHN)

HSP 1 Score: 129 bits (324), Expect = 1.150e-34
Identity = 66/123 (53.66%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 PQSLDAALFVMSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADSSEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIRHKTDQFVFRFRKP 369
            P SLD A+  + YHD+Y+  E  K P  D A  +  L+ A+KPGG V V DHVA+ G D+   V K+HRIDPA VK  F  AGF  +A+ D  +   DDHSKLVFDPA+R KTD+FVFRF KP
Sbjct:  132 PASLDFAMLHLVYHDLYWESEKFKVPRTDPAAFLATLYKAMKPGGTVAVIDHVALPG-DTRATVEKMHRIDPATVKADFATAGFVLEAESDVLKAAEDDHSKLVFDPAVRGKTDRFVFRFSKP 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52917.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001933EA3A5.390e-4359.68class I SAM-dependent methyltransferase n=1 Tax=St... [more]
UPI00101CA90E1.600e-4258.87class I SAM-dependent methyltransferase n=1 Tax=St... [more]
A0A3N5L4H9_9GAMM1.100e-4158.06Methyltransferase domain-containing protein n=1 Ta... [more]
A0A829Y4E5_9GAMM3.700e-4158.06Methyltransferase n=2 Tax=Steroidobacter TaxID=469... [more]
UPI000E323D7E7.520e-4058.20class I SAM-dependent methyltransferase n=1 Tax=St... [more]
A0A841HIE8_9GAMM3.040e-3856.91Putative methyltransferase n=1 Tax=Povalibacter uv... [more]
A0A239BXM1_9SPHN1.310e-3553.23Predicted methyltransferase n=1 Tax=Sphingomonas l... [more]
A0A2W5A9Q6_9SPHN4.850e-3553.23Methyltransferase n=1 Tax=Sphingomonas sanxanigene... [more]
A0A437M6Y5_9SPHN5.100e-3552.42Methyltransferase domain-containing protein n=1 Ta... [more]
A0A258S8R4_9SPHN1.150e-3453.66Methyltransferase n=1 Tax=Sphingomonas sp. 28-62-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52917contigP-wetherbeei_contig52917:3..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1346791.M529_07760
PFAMsMethyltransf_25,PCMT
Model size375
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.77e-31
EggNOG OGsCOG4798@1|root,COG4798@2|Bacteria,1RHGZ@1224|Proteobacteria,2U69N@28211|Alphaproteobacteria,2KDKH@204457|Sphingomonadales
DescriptionMethyltransferase
Cds size345
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.930712-UTR-P-wetherbeei_contig52917:2..321683186792.930712-UTR-P-wetherbeei_contig52917:2..32Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52917 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.9415567-CDS-P-wetherbeei_contig52917:32..3771683186792.9415567-CDS-P-wetherbeei_contig52917:32..377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52917 33..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52917.1.1prot_P-wetherbeei_contig52917.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52917 33..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52917.1.1

>prot_P-wetherbeei_contig52917.1.1 ID=prot_P-wetherbeei_contig52917.1.1|Name=mRNA_P-wetherbeei_contig52917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MSYHDVYYTPEGAKGPMGDAAQMVGGLFTALKPGGVVVVQDHVAIAGADS
SEAVNKLHRIDPAAVKRVFEQAGFQFDAQDDTFRNGSDDHSKLVFDPAIR
HKTDQFVFRFRKPG*
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mRNA from alignment at P-wetherbeei_contig52917:3..377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52917.1.1 ID=mRNA_P-wetherbeei_contig52917.1.1|Name=mRNA_P-wetherbeei_contig52917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig52917:3..377+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCAGTCGCTGGACGCCGCCCTGTTCGTGATGTCCTATCACGATGTGTA TTACACCCCGGAAGGCGCCAAGGGCCCGATGGGCGATGCGGCGCAGATGG TCGGCGGCCTGTTCACCGCATTGAAGCCCGGCGGCGTGGTGGTGGTGCAG GATCACGTCGCCATCGCAGGAGCCGATTCCAGCGAAGCGGTGAACAAGCT GCATCGCATCGACCCCGCTGCGGTCAAGCGGGTGTTCGAGCAGGCCGGCT TCCAGTTCGACGCTCAGGACGACACGTTCAGGAACGGCAGCGACGATCAC AGCAAGCTGGTGTTCGATCCGGCGATCCGCCACAAGACCGATCAGTTCGT TTTCCGGTTCCGCAAGCCGGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52917:3..377+

>mRNA_P-wetherbeei_contig52917.1.1 ID=mRNA_P-wetherbeei_contig52917.1.1|Name=mRNA_P-wetherbeei_contig52917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig52917:3..377+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTATCACGATGTGTATTACACCCCGGAAGGCGCCAAGGGCCCGAT
GGGCGATGCGGCGCAGATGGTCGGCGGCCTGTTCACCGCATTGAAGCCCG
GCGGCGTGGTGGTGGTGCAGGATCACGTCGCCATCGCAGGAGCCGATTCC
AGCGAAGCGGTGAACAAGCTGCATCGCATCGACCCCGCTGCGGTCAAGCG
GGTGTTCGAGCAGGCCGGCTTCCAGTTCGACGCTCAGGACGACACGTTCA
GGAACGGCAGCGACGATCACAGCAAGCTGGTGTTCGATCCGGCGATCCGC
CACAAGACCGATCAGTTCGTTTTCCGGTTCCGCAAGCCGGGCTGA
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