mRNA_P-wetherbeei_contig5284.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5284.3.1
Unique NamemRNA_P-wetherbeei_contig5284.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5284.3.1 vs. uniprot
Match: D8LME2_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME2_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 8.160e-38
Identity = 79/176 (44.89%), Postives = 103/176 (58.52%), Query Frame = 3 
Query:   54 PWDHAGPHSAAAYAWDAPLEKSRVLRVEFQQGGKWEAREYPLDEFANHRHVRLTRRLPDLSRPTRRGYALQKKVGALTDTWRRRYCVLKGQVLYIFRDAKNLELKGVVYLGATDAAAGXXXXXXXXXXXXXTVAAVYQLRLQDAAPTGDLFGRVGAMMDDAVSFLLGDELVHAPGG 581
            PWD  GP +A+ + WD P+ +SRVL V F+Q GKWE REY LDE   H+ V LTR LP L  P  RG  LQ++ G LTD WRRR+ VLKG VL++F+D   + L+G +YLGAT + +                A + Q         GD+  ++G MMDDAV  L+G E V + GG
Sbjct:  785 PWDGLGPQAASPFTWDQPVGESRVLTVGFEQAGKWEEREYRLDELEKHKRVSLTRTLPSLENPRLRGEMLQRQTGTLTDVWRRRWAVLKGPVLFLFKDKGCVHLRGAIYLGATRSTSDQGGGGARGGAAGPQRAQIGQKA--GGRDKGDILDKMGNMMDDAVGLLVGPEFVSSGGG 958
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BLAST of mRNA_P-wetherbeei_contig5284.3.1 vs. uniprot
Match: A0A6H5K0E6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.170e-37
Identity = 80/176 (45.45%), Postives = 101/176 (57.39%), Query Frame = 3 
Query:   54 PWDHAGPHSAAAYAWDAPLEKSRVLRVEFQQGGKWEAREYPLDEFANHRHVRLTRRLPDLSRPTRRGYALQKKVGALTDTWRRRYCVLKGQVLYIFRDAKNLELKGVVYLGATDAAAGXXXXXXXXXXXXXTVAAVYQLRLQDAAPTGDLFGRVGAMMDDAVSFLLGDELVHAPGG 581
            PWD  GP +AA + WD P+ +SRVL V F Q GKWE REY LDE   H+ V LTR LP L  P  RG  LQ++ G LTD WRRR+ VLKG VL++F+D   + L+G +YLGAT +                  A + Q         GD+  ++G MMDDAV  L+G E V + GG
Sbjct: 1113 PWDGLGPQAAAPFTWDQPVGESRVLTVGFAQAGKWEEREYRLDELEKHKRVSLTRTLPSLENPRLRGEMLQRQTGTLTDVWRRRWAVLKGPVLFLFKDKGCVHLRGAIYLGATRSTGDQGGGGARGGAAGPQRAQIGQKA--GGRDKGDILDKMGNMMDDAVGLLVGPEFVSSGGG 1286
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BLAST of mRNA_P-wetherbeei_contig5284.3.1 vs. uniprot
Match: A0A835ZA73_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA73_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.680e-27
Identity = 88/215 (40.93%), Postives = 105/215 (48.84%), Query Frame = 3 
Query:    3 GSAASAVMAAGAAGWAPP--WDHAGPHSAAAYAWDAPLE----KSRVLRVEFQQGGKWEAREYPLDEFANHRHVRLTRRLPDLSRPTRRGYALQKKVGALTD----------------TWRRRYCVLKGQVLYIFRDAKNLELKGVVYLGATDAAAGXXXXXXXXXXXXXTVAAVYQLRLQDAAPTGDLFGRVGAMMDDAVSFLLGDELVHAPGG 581
            GS ASA +      W+PP  WD     ++  YAWD P        R L+V F+QG  W  REY LDEFA HR VRL R LP L  P R    LQK  GALT                 TW+RR+ VLKG VLY+F DA  L+LKG+++L     A            XXX   A            GDL  RVG +MDDAV  ++GDE + A  G
Sbjct: 1025 GSDASAALT-----WSPPPPWDPLPAQTSLPYAWDHPEAGGGAAGRSLKVAFRQGNAWVEREYRLDEFAEHRAVRLRRSLPSLDTPRRAAPLLQKTRGALTXXXXXXXXXXXXXXXXXTWKRRWAVLKGPVLYLFGDAHALQLKGIIHLRLPGGAGVRVRPSRGRRGXXXXXXA------------GDLLTRVGEVMDDAVGLIVGDEFIPAKRG 1222
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5284.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LME2_ECTSI8.160e-3844.89SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K0E6_9PHAE1.170e-3745.45PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835ZA73_9STRA5.680e-2740.93PH domain-containing protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5284contigP-wetherbeei_contig5284:2259..3456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LME2
PFAMsATG_C,Chorein_N,PH,SHR-BD,VPS13,VPS13_C,VPS13_mid_rpt
Model size701
Max annot lvl2759|Eukaryota
KEGG koko:K19525,ko:K19527
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.06e-38
EggNOG OGsKOG1796@1|root,KOG1796@2759|Eukaryota
Descriptionprotein transport
Cds size678
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.0230367-CDS-P-wetherbeei_contig5284:2258..26331683186792.0230367-CDS-P-wetherbeei_contig5284:2258..2633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5284 2259..2633 -
1683186792.0327451-CDS-P-wetherbeei_contig5284:2847..30271683186792.0327451-CDS-P-wetherbeei_contig5284:2847..3027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5284 2848..3027 -
1683186792.0407681-CDS-P-wetherbeei_contig5284:3310..34331683186792.0407681-CDS-P-wetherbeei_contig5284:3310..3433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5284 3311..3433 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.0488029-UTR-P-wetherbeei_contig5284:3433..34561683186792.0488029-UTR-P-wetherbeei_contig5284:3433..3456Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5284 3434..3456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5284.3.1prot_P-wetherbeei_contig5284.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5284 2259..3433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5284.3.1

>prot_P-wetherbeei_contig5284.3.1 ID=prot_P-wetherbeei_contig5284.3.1|Name=mRNA_P-wetherbeei_contig5284.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
MAAGAAGWAPPWDHAGPHSAAAYAWDAPLEKSRVLRVEFQQGGKWEAREY
PLDEFANHRHVRLTRRLPDLSRPTRRGYALQKKVGALTDTWRRRYCVLKG
QVLYIFRDAKNLELKGVVYLGATDAAAGAGGGGRGGRGARGTVAAVYQLR
LQDAAPTGDLFGRVGAMMDDAVSFLLGDELVHAPGGGGGGAGSSDDGTAL
ARPGEHDGGAGGRGGRGHAGTHGRGG
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mRNA from alignment at P-wetherbeei_contig5284:2259..3456-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5284.3.1 ID=mRNA_P-wetherbeei_contig5284.3.1|Name=mRNA_P-wetherbeei_contig5284.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1198bp|location=Sequence derived from alignment at P-wetherbeei_contig5284:2259..3456- (Phaeothamnion wetherbeei SAG_119_79)
GTGGGTCGGCGGCGTCGGCGGTGATGGCAGCGGGGGCGGCCGGGTGGGCA
CCGCCGTGGGACCACGCGGGGCCGCACTCCGCCGCGGCGTACGCCTGGGA
CGCGCCGCTGGAGAAGTCGAGGGTGCTACGCGTAGAGTTTCAGCAGGTAG
GCATGGGAAAGGGGGGGAGTTTGTCGTCGACAGAAGCCTTCTCCTGATCC
GTTCGGCTGTTTCGTGGGTTGCTGTCGGTTATTGATATTCATTTCCCGAG
CGGCAGCCCGCTCACGTTGTGTTTGCCGCACCGGCATGCGGTGGAGGACG
TTGTGTTCTGAATTGTTTCGTTGCTAATCCTGAATTGAGCCCTGGATCCT
CCTACACACCCTTAATATAAAATCGCCGCCTTGATGTACTCATTTTTCGC
TCTGACCAAACAATCGGTGCCGAGGCCAGGGCGGCAAGTGGGAGGCGCGG
GAATATCCCCTGGACGAATTTGCAAACCACAGGCACGTGCGGCTGACGCG
GCGGTTGCCGGACCTGTCGCGGCCCACGCGCCGCGGTTACGCGCTGCAGA
AGAAGGTCGGCGCGCTTACGGACACGTGGCGCCGCCGCTACTGCGTGCTC
AAGGGCCAGGTGAGGCTGACGGAATTCGGCGAACTGAAGAGGCATTTGTC
GTTCATGGGTTTTCAACACTTCTACCGGCTCTCACAGTAAACGGTACAAA
CTTGCGTTTCGGTGTTCGATTGTTTTCCACAAACAAGCATTTGGCGGCTT
CCGCTCTTCGGTGCAAGGTGTAGTTCCAACTACAGCTTCGGCTATCCTTT
CCTGCCGTATGCAAAATCTGCAGGTGCTATACATCTTCCGAGACGCCAAG
AATCTTGAGCTCAAAGGGGTGGTTTACCTCGGCGCGACCGACGCAGCGGC
CGGCGCTGGTGGAGGAGGCAGAGGCGGGCGTGGCGCTCGGGGCACCGTCG
CCGCGGTGTACCAGCTGCGGCTCCAGGACGCCGCCCCGACGGGCGACCTC
TTCGGCCGCGTCGGAGCCATGATGGACGACGCCGTCAGCTTCCTGCTTGG
AGACGAACTGGTGCACGCGCCAGGCGGTGGCGGTGGTGGCGCCGGCAGCA
GTGATGACGGCACTGCTCTCGCTCGGCCCGGCGAGCACGATGGCGGCGCT
GGCGGCCGCGGCGGGCGCGGGCATGCTGGCACGCATGGCCGGGGAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5284:2259..3456-

>mRNA_P-wetherbeei_contig5284.3.1 ID=mRNA_P-wetherbeei_contig5284.3.1|Name=mRNA_P-wetherbeei_contig5284.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig5284:2259..3456- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGGGGGCGGCCGGGTGGGCACCGCCGTGGGACCACGCGGGGCC
GCACTCCGCCGCGGCGTACGCCTGGGACGCGCCGCTGGAGAAGTCGAGGG
TGCTACGCGTAGAGTTTCAGCAGGGCGGCAAGTGGGAGGCGCGGGAATAT
CCCCTGGACGAATTTGCAAACCACAGGCACGTGCGGCTGACGCGGCGGTT
GCCGGACCTGTCGCGGCCCACGCGCCGCGGTTACGCGCTGCAGAAGAAGG
TCGGCGCGCTTACGGACACGTGGCGCCGCCGCTACTGCGTGCTCAAGGGC
CAGGTGCTATACATCTTCCGAGACGCCAAGAATCTTGAGCTCAAAGGGGT
GGTTTACCTCGGCGCGACCGACGCAGCGGCCGGCGCTGGTGGAGGAGGCA
GAGGCGGGCGTGGCGCTCGGGGCACCGTCGCCGCGGTGTACCAGCTGCGG
CTCCAGGACGCCGCCCCGACGGGCGACCTCTTCGGCCGCGTCGGAGCCAT
GATGGACGACGCCGTCAGCTTCCTGCTTGGAGACGAACTGGTGCACGCGC
CAGGCGGTGGCGGTGGTGGCGCCGGCAGCAGTGATGACGGCACTGCTCTC
GCTCGGCCCGGCGAGCACGATGGCGGCGCTGGCGGCCGCGGCGGGCGCGG
GCATGCTGGCACGCATGGCCGGGGAGGC
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