mRNA_P-wetherbeei_contig5283.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5283.1.1
Unique NamemRNA_P-wetherbeei_contig5283.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5283.1.1 vs. uniprot
Match: A0A484MIJ9_9ASTE (RING-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484MIJ9_9ASTE)

HSP 1 Score: 53.5 bits (127), Expect = 2.920e-5
Identity = 28/60 (46.67%), Postives = 33/60 (55.00%), Query Frame = -2 
Query:  429 PVGPPSSEGASSCTICMSPFRSRAMIFEINPCSHRFHVACIAEARMHCVK-SCPCCRTEI 605
            P  P + + A SC ICM  F+SR  +    PCSH FHV CIA    H    SCP CR+ I
Sbjct:  119 PYDPAAGDEADSCAICMEEFQSREALSIFQPCSHSFHVHCIANWVSHNTSGSCPICRSVI 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5283.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A484MIJ9_9ASTE2.920e-546.67RING-type domain-containing protein n=1 Tax=Cuscut... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5283contigP-wetherbeei_contig5283:1198..2251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size696
Hectar predicted targeting categoryother localisation
Exons2
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.8242948-CDS-P-wetherbeei_contig5283:1197..15881683186791.8242948-CDS-P-wetherbeei_contig5283:1197..1588Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5283 1198..1588 -
1683186791.833309-CDS-P-wetherbeei_contig5283:1946..20411683186791.833309-CDS-P-wetherbeei_contig5283:1946..2041Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5283 1947..2041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.8415148-UTR-P-wetherbeei_contig5283:2041..22511683186791.8415148-UTR-P-wetherbeei_contig5283:2041..2251Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5283 2042..2251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5283.1.1prot_P-wetherbeei_contig5283.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5283 1198..2041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5283.1.1

>prot_P-wetherbeei_contig5283.1.1 ID=prot_P-wetherbeei_contig5283.1.1|Name=mRNA_P-wetherbeei_contig5283.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MMASAQSPWQSGSKSGDVAVLRETMLLRKMTSARCTAARPLSAAARIRTD
ELNSVGSVRATAACAAGVRPVFEISVRQQGQLLTQCILASAMQATWNRWL
HGLISKIIARERNGDMQIVQDDAPSLDGGPTGSVVVEGRAAGVRGALPSD
MLCLWKLRCGL*
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mRNA from alignment at P-wetherbeei_contig5283:1198..2251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5283.1.1 ID=mRNA_P-wetherbeei_contig5283.1.1|Name=mRNA_P-wetherbeei_contig5283.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1054bp|location=Sequence derived from alignment at P-wetherbeei_contig5283:1198..2251- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTTTTTCTCCAGAACCCACAATGCGCTTCGCCTGTCACATATGGCCT
TGCAGCGTCATGCAGGCTGATAGGATGACAAGCGACGGCTCTGCGACGTT
CTAGAACCGCTTGCCGCTTACCAGCCGATAGAGAGCAGGAAGGGACCTGT
TTCTCACGACCAGTTATTCAATTTTCACTAAGTGAGAGTGGTTGTGTAAG
AGTGGAAGCGATGATGGCTTCGGCGCAATCGCCGTGGCAGTCCGGCAGCA
AGAGCGGCGACGTCGCCGTCCTCCGAGAAACTATGCTGCTGCGCAAGATG
ACGAGGTATCTATTGCATTAAATCCGGATGACTGGGCCGCTCGTTGAGCA
TAGAACAGGTCAAACAAATTGACCGAGAAATCTCTCCCGCCAAAGCACCT
TTGTTACTGGTCACCACCAGTAAGTTTACTCATTCATCCAAGAGGGTCAA
AGCTTGGACTTTCGTGTCGTAAGGAAGACAGAAAGAAAAGAAAGATGGAG
GGAATCTTTCAATGCGCCGATGGACACAGGAGATTGGCAATTAATCAATT
ATACGCTTTCCGTTCGTCCCATACCTGTTTAATAACCTCCCAACTTTCTT
TGGTTTTCAAGCTACTAACCCTGGCTGCTGCCCGCCTCGCCGCGCCGCTG
CTTGAACCAGCAGCGCTCGTTGTACTGCGGCGCGGCCCCTCTCCGCTGCT
GCCCGAATCCGCACGGACGAGCTCAATTCAGTGGGCTCAGTTCGTGCAAC
CGCGGCGTGTGCTGCGGGAGTCAGGCCAGTCTTCGAAATCTCAGTACGGC
AGCAGGGGCAGCTCTTGACGCAATGCATCCTAGCCTCGGCGATGCAGGCG
ACGTGGAATCGGTGGCTGCACGGATTGATCTCGAAAATCATTGCCCGGGA
GCGGAATGGTGACATGCAGATCGTGCAGGACGACGCTCCTTCGCTCGACG
GCGGTCCTACTGGGTCTGTGGTTGTAGAGGGGCGCGCCGCCGGCGTGCGT
GGCGCGCTGCCCTCGGACATGCTGTGCTTATGGAAACTTCGCTGCGGACT
GTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5283:1198..2251-

>mRNA_P-wetherbeei_contig5283.1.1 ID=mRNA_P-wetherbeei_contig5283.1.1|Name=mRNA_P-wetherbeei_contig5283.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig5283:1198..2251- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGCTTCGGCGCAATCGCCGTGGCAGTCCGGCAGCAAGAGCGGCGA
CGTCGCCGTCCTCCGAGAAACTATGCTGCTGCGCAAGATGACGAGCGCTC
GTTGTACTGCGGCGCGGCCCCTCTCCGCTGCTGCCCGAATCCGCACGGAC
GAGCTCAATTCAGTGGGCTCAGTTCGTGCAACCGCGGCGTGTGCTGCGGG
AGTCAGGCCAGTCTTCGAAATCTCAGTACGGCAGCAGGGGCAGCTCTTGA
CGCAATGCATCCTAGCCTCGGCGATGCAGGCGACGTGGAATCGGTGGCTG
CACGGATTGATCTCGAAAATCATTGCCCGGGAGCGGAATGGTGACATGCA
GATCGTGCAGGACGACGCTCCTTCGCTCGACGGCGGTCCTACTGGGTCTG
TGGTTGTAGAGGGGCGCGCCGCCGGCGTGCGTGGCGCGCTGCCCTCGGAC
ATGCTGTGCTTATGGAAACTTCGCTGCGGACTGTGA
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