mRNA_P-wetherbeei_contig5278.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5278.1.2
Unique NamemRNA_P-wetherbeei_contig5278.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: A0A6H5JH16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH16_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 9.690e-84
Identity = 145/255 (56.86%), Postives = 185/255 (72.55%), Query Frame = 1
Query:  325 VVDYFAVIGPRPHGDLELLDEEQNTPDMLRCVWEAAITDIAVVRPSKGESCPDGYELLERTPGNHRADLNHGS-----MHRAVYLAVRRQHMSRRSDYIADVQVLFPQHERLPACEPGWELVTRSVSGRHRAKLNK---------------GGEHAYLAVRRVQRDAVDCPPAVVNLCVVLKNKDETAPRGWRLLERDLNKGKFGDVVYLAYELGPPFSTARLPYRSVILDRYPEVDNPVFPFPQEQLPMFVYPK 1029
            + DYF+V+G R  GDL+LLD E ++P+ML+CVWE AITDIAVVR  KGE CP+GYEL++RTP  H ADLNHGS     + RA++LAVRRQH+S+R DYIA++QV+F           GWELV +S SG+  A LNK               GG+ A LAVRR  RD VDCP AV ++CV+L+NK+E  P G+R++++DLN+GK GDVV L Y++G   ST RLP+RS+ILDRYPE D+P+FPFP +QLPMFVYPK
Sbjct:    7 IADYFSVVGARNDGDLDLLDPELHSPEMLKCVWEDAITDIAVVRTGKGEVCPEGYELIDRTPMGHDADLNHGSVTSWGLRRAIHLAVRRQHVSQRDDYIAEIQVVFSGDAYEVPEGQGWELVEKSASGKG-ANLNKVMECTSDRNIRVHRVGGDDALLAVRRAVRDLVDCPAAVCSVCVLLRNKEEHPPPGYRVIQKDLNRGKSGDVVQLGYQVGGALSTVRLPFRSMILDRYPEQDSPLFPFPGDQLPMFVYPK 260          
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: D7G3F8_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F8_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 5.700e-51
Identity = 115/222 (51.80%), Postives = 136/222 (61.26%), Query Frame = 1
Query:  517 HRADLNHGS-----MHRAVYLAVRRQHMSRRSDYIADVQVLFPQHE-RLPACEPGWELVTRSVSGRHRAKLNKGGEHAYLAVRRVQRDAVDCPPAVVNLCVVLKNKDETAPRGWRLLERDLNKGKFGDVVYLAYELGPPFSTARLPYRSVILDRYPEVDNPVFPFPQEQLPMFVYPKGMLLEHRETNDTPKPTFFSFVFTNVDGRRTYAACLTFYEP-LPSS 1161
            H ADLNHGS     + RAV+LAVRRQH+S+R DYIA++QV+F      LP  + GWELV +S SG+  A LNK                                              DLN+GK GDVV L Y++G   ST RLP+RS+ILDRYPE D+P+FPFP +QLPMFVYPKGMLLE R   DTPK +FFSFVFTNV G RT+ ACLTFYEP LPS+
Sbjct:    3 HNADLNHGSVTSWGLRRAVHLAVRRQHVSQRDDYIAEIQVVFGGAAYELPEGQ-GWELVEKSASGKG-ANLNK----------------------------------------------DLNRGKSGDVVQLGYQVGGALSTVRLPFRSMILDRYPEQDSPLFPFPGDQLPMFVYPKGMLLERRSGRDTPKSSFFSFVFTNVHGCRTFTACLTFYEPMLPSA 176          
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: A0A4D9CQX3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQX3_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.410e-42
Identity = 108/293 (36.86%), Postives = 160/293 (54.61%), Query Frame = 1
Query:  319 EKVVDYFAVIGPRPHGDLE--LLDEEQNTPDMLRCVWEAAITDIAVV-RPSKGESCPDGYELLERTPGNHRADLNHG-----SMHRAVYLAVRRQHMSRRSDYIADVQVLFPQHERLPACEPGWELVTRSVSGRHRAKLNKGGEHAYLAVRRVQRDAVD----CPPAVVNLCVVLKNKDETAPRGWRLLERDLNK-GKFGDVVYLAYELGPPFSTARLPYRSVILDRYP-EVDNPVFPFPQEQLPMFVYPKGMLLEHRETNDTPKPTFFSFVFTNVDGRRTYAACLTFYEPLP 1155
            E++ DYFAV+GP+   DLE  ++ E+ +  ++ R + E AI DI +V  P +       YELL + P      L  G     + HR  Y+  RR+   R + YI +V+V+    E  P    G+EL+ ++V G        G +  YLAVR    D        PP + +LC+    K  +AP  + +L R L++ G   + +YLAY+ GP      +PY +  LD +P E     FP PQ +LPMF +PKG++L+H++ ND P P++FSFVFT++DG R + ACL FYE LP
Sbjct:    5 ERLCDYFAVVGPK-EADLENRVVQEDYSIGNLHRAL-EEAIVDICIVDHPREVIPFEKNYELLLK-PEQVEEGLGEGGKLQLAKHR--YICFRRRKHRRTTSYITEVRVVCKSQESPPQ---GFELIEKTVGGASGDLSRSGSQQVYLAVRYAHVDETSFQFSIPPVLADLCLCSDEKGGSAPMEYTVLPRPLSRLGLPNENIYLAYQQGPSAGLCDIPYEAYSLDWFPHEATYEDFPLPQNELPMFCFPKGVVLKHQKRNDAPMPSYFSFVFTSIDGDRVHVACLQFYELLP 289          
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: W7T7D8_9STRA (UDENN n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7D8_9STRA)

HSP 1 Score: 168 bits (425), Expect = 5.880e-42
Identity = 108/293 (36.86%), Postives = 161/293 (54.95%), Query Frame = 1
Query:  319 EKVVDYFAVIGPRPHGDLE--LLDEEQNTPDMLRCVWEAAITDIAVVR-PSKGESCPDGYELLERTPGNHRADLNHG-----SMHRAVYLAVRRQHMSRRSDYIADVQVLFPQHERLPACEPGWELVTRSVSGRHRAKLNKGGEHAYLAVRRVQRDAVD----CPPAVVNLCVVLKNKDETAPRGWRLLERDLNK-GKFGDVVYLAYELGPPFSTARLPYRSVILDRYP-EVDNPVFPFPQEQLPMFVYPKGMLLEHRETNDTPKPTFFSFVFTNVDGRRTYAACLTFYEPLP 1155
            E++ DYFAV+GP+   DLE  ++ E+ +  ++ R + E AI DI +V  P +       YELL + P      L  G     + HR  Y+  RR+   R + YI +V+++    E  P    G+EL+ ++V G        G +  YLAVR    D        PP + +LC+    K  +AP  + +L R L++ G   + +YLAY+ GP      +PY +  LD +P E     FP PQ +LPMF +PKG++L+H++ NDTP P++FSFVFT++DG R + ACL FYE LP
Sbjct:    5 ERLCDYFAVVGPK-EADLENRVVQEDYSIGNLHRAL-EEAIVDICIVNHPREVIPFEKNYELLLK-PEQVEEGLGEGGKLQLAKHR--YICFRRRKHRRTTSYITEVRLVCKSQESPPQ---GFELIEKTVGGASGDLSRGGSQQVYLAVRYAHVDETSFRFSIPPVLADLCLCSDEKGGSAPMEYTVLPRPLSRLGLPNENIYLAYQQGPSAGLCDIPYEAYSLDWFPHEATYEDFPLPQNELPMFCFPKGVVLKHQKRNDTPMPSYFSFVFTSIDGDRVHVACLQFYELLP 289          
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: A0A6J8DXY4_MYTCO (DENND4 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8DXY4_MYTCO)

HSP 1 Score: 152 bits (385), Expect = 1.090e-36
Identity = 99/280 (35.36%), Postives = 138/280 (49.29%), Query Frame = 1
Query:  313 DFEKVVDYFAVIGPRPHGDLELLDEEQNTPDMLRCVWEAAITDIAVVRPSKGESCPDGYELLERTPGNHRADLNHGSMH-RAVYLAVRRQHMSRRSDYIADVQVLFPQHERLPACEPGWELVTRSVSGRHRAKLNKGGEHAYLAVRRVQRDAVDCPPAVVNLCVVLKNKDETAPRGWRLLERDLNKGKFGDVVYLAYELGPPFSTARLPYRSVILDRYPEVDNPVFPFPQEQLPMFVYPKGMLLEHRETN-DTPKPTFFSFVFTNVDGRRTYAACLTFYE 1146
            D  +V DYF V+G  P   L L +E  N   +     +  ITDI ++  S GE  P  Y  + +T     ADLNHGS+    +Y+  RR   SR    + D+ VL+   ERL    PG E+V  +  G      N      Y+  RR + +A     +VV++CV+L NK+E  P  +  +E++LNKG  G  V++ Y+     +   L Y+  ILDRYP  D   FP P E +PMF  P G  +E        P P F +FV T  DG + Y A + FYE
Sbjct:    2 DERRVADYFVVVG-LPDNPLPL-EEISNEAAIKSSYKQDPITDICIINKSLGEKLPKNYTCIAKTSSGFPADLNHGSIRCHELYICYRR---SREKPPLIDIGVLYEGKERLM---PGCEVVHTTAWGSPANVNNSNNARIYITFRRAKEEAASDTLSVVDICVILSNKNENPPHAYHCIEKNLNKGMIGSDVFICYKKAVTKADI-LAYKPAILDRYPIEDYESFPLP-ESVPMFCLPMGASVECWSAKAQHPLPIFSTFVLTGSDGEKVYGAAVQFYE 271          
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: A0A7M7N8E0_STRPU (Uncharacterized protein n=6 Tax=Echinacea TaxID=7674 RepID=A0A7M7N8E0_STRPU)

HSP 1 Score: 146 bits (369), Expect = 1.370e-34
Identity = 102/300 (34.00%), Postives = 153/300 (51.00%), Query Frame = 1
Query:  298 KDDGDDFEKVVDYFAVIG----PRPHGDLELLDEEQNTPDMLRCVWEAAITDIAVVRPSKGESCPDGYELLERTPGNHRADLNHGSMHR-AVYLAVRRQHMSRRSDYIADVQVLFPQHERLPACEPGWELVTRSVSGRHRAKLNKGG---EHAYLAVRRVQRDAVDCPPAVVNLCVVLKNKDETAPRGWRLLERDLNKGKF-GDVVYLAYELGPPFSTARLPYRSVILDRYPEVDNPVFPFPQEQLPMFVYPKGMLLE-HRETNDTPKPTFFSFVFTNVDGRRTYAACLTFYEPLPSSDV 1167
            +D G    +V DYF V G     RP  D  L +  +  P  L     A I DI V+  S+GE  P G+  +E TP    ADLNHGS+   +V++ +RR +       + D+ +L+   ER+    PG E+V+ + +G      N+ G   + AY+  RR   +A     AV+++CV+L NK+E+ P  + L+ ++LNKG   G  VYL Y+       + + Y++ +L RYP  D   FP PQ     F  P G  +E   ET + P P F +FV T++ G + Y A +TFYE  P   +
Sbjct:    2 EDGGGSGRRVADYFVVAGLTETSRPLNDDLLGEAPRKPPKNL-----APIIDITVIIKSQGEKVPPGFTCVETTPSGLPADLNHGSIASPSVFICIRRGY---EQPPLTDIGILYEGKERVM---PGCEIVSHTPNGHPANVSNRIGVNNQRAYITYRRASENAPHNALAVIDICVILMNKNESPPHAFCLINKNLNKGSMMGSDVYLCYKKSAIRGNS-IVYQADMLSRYPLEDYDDFPLPQST--PFCMPMGAAIECWAETREHPLPVFSTFVLTDIAGGKVYGAAVTFYENYPEEKL 287          
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: A0A8J1TW55_OWEFU (Ofus.G07215 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TW55_OWEFU)

HSP 1 Score: 143 bits (361), Expect = 1.550e-33
Identity = 99/288 (34.38%), Postives = 143/288 (49.65%), Query Frame = 1
Query:  313 DFEKVVDYFAVIGPRPHGDLELLDEEQNTPDMLRCVWEA-AITDIAVVRPSKGESCPDGYELLERTPGNHRADLNHGSMHRA-VYLAVRRQHMSRRSDYIADVQVLFPQHERLPACEPGWELVTRSVSGRHRAKLNKGGEHAYLAVRRVQRDAVDCPPAVVNLCVVLKNKDETAPRGWRLLERDLNKGKFGDVVYLAYELGPPFSTARLPYRSVILDRYPEVDNPVFPFPQEQLPMFVYPKGMLLEH-RETNDTPKPTFFSFVFTNVDGRRTYAACLTFYEPLPSSDV 1167
            D ++V +YF V G  P   + L  EE N    ++   +   I D+AV+  + GE  P G++ +E TP    ADLNHGS+    VYL  RR    R    + D+ VL+   ER+ +   G E++  +  GR     N      Y+  RR    A     AV ++CV+L NK ET P  +  + ++LNK   G  VYL Y+     +   L Y+  IL+RYPE++ P FP P +Q+ MF  P G  +E    T   P P F +FV T+    + Y A +TFYE  P   +
Sbjct:    2 DDKRVAEYFVVAG-LPDNPVPL--EEYNNDTAIKSTHKQDPIVDVAVIIRNAGEKPPKGFKCVELTPLGFPADLNHGSIRSPEVYLCYRR---GRDKPPLIDIGVLYEGKERVMS---GCEVIHVTPGGRPANVNNSTSNRIYITFRRAGETAASDTLAVTDICVILANKGETPPHAYCQIGKNLNKAMVGSDVYLCYKKSMAKANT-LAYQPAILNRYPELNYPDFPLP-DQVSMFCLPMGTTIESWSSTAQHPLPVFSTFVLTDETREQVYGAAVTFYEEYPEDKL 278          
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: A0A8B8DS26_CRAVI (C-myc promoter-binding protein-like isoform X1 n=5 Tax=Crassostrea TaxID=6564 RepID=A0A8B8DS26_CRAVI)

HSP 1 Score: 140 bits (354), Expect = 1.250e-32
Identity = 98/282 (34.75%), Postives = 141/282 (50.00%), Query Frame = 1
Query:  313 DFEKVVDYFAVIGPRPHGDLELLDEEQNTPDMLRCVWEAAITDIAVVRPSKGESCPDGYELLERTPGNHRADLNHGSMH-RAVYLAVRRQHMSRRSDYIADVQVLFPQHERLPA-CEPGWELVTRSVSGRHRAKLNKGGE-HAYLAVRRVQRDAVDCPPAVVNLCVVLKNKDETAPRGWRLLERDLNKGKFGDVVYLAYELGPPFSTARLPYRSVILDRYPEVDNPVFPFPQEQLPMFVYPKGMLLEHRETN-DTPKPTFFSFVFTNVDGRRTYAACLTFYE 1146
            D  +V DYF V G  P   L L +E  N   +     +  ITDIAV+  + GE  P GY  +ERT  N+ ADLNHGS+    ++L  RR    R    + DV VL+   ERL + CE     +  +      A +N G     Y+  RR +  A     AVV++ ++L+NK+E AP  +  +E++LN+G  G  V++ Y+     +   L Y+  ++ RYPE D   FP P E +P F  P G  +E        P P F +FV T  +  + Y A +TFYE
Sbjct:    2 DDRRVADYFVVAG-LPENPLPL-EEFSNEAAIKPTYKQDPITDIAVIDKTLGEKVPKGYTCIERTQSNYLADLNHGSIRCHEMFLCYRR---GRDKPPLTDVGVLYEGKERLMSECE-----IVHTTPWGSPANVNNGSNGRIYITYRRARETAASDTLAVVDVVIILQNKNEIAPHAYHKIEKNLNRGMVGSDVFVCYKKAMVKADI-LAYKPGLIQRYPEEDYENFPLPPE-VPQFCLPMGASIECWSAKAQHPLPVFSTFVLTLANNEKVYGAAVTFYE 271          
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: K1PW18_CRAGI (C-myc promoter-binding protein n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1PW18_CRAGI)

HSP 1 Score: 140 bits (352), Expect = 2.230e-32
Identity = 101/294 (34.35%), Postives = 145/294 (49.32%), Query Frame = 1
Query:  277 ARGLGSNKDDGDDFEKVVDYFAVIGPRPHGDLELLDEEQNTPDMLRCVWEAAITDIAVVRPSKGESCPDGYELLERTPGNHRADLNHGSMH-RAVYLAVRRQHMSRRSDYIADVQVLFPQHERLPA-CEPGWELVTRSVSGRHRAKLNKGGE-HAYLAVRRVQRDAVDCPPAVVNLCVVLKNKDETAPRGWRLLERDLNKGKFGDVVYLAYELGPPFSTARLPYRSVILDRYPEVDNPVFPFPQEQLPMFVYPKGMLLEHRETN-DTPKPTFFSFVFTNVDGRRTYAACLTFYE 1146
            A G  S  DD     +V DYF V G  P   L L +E  N   +     +  ITDIAV+  + GE  P GY  +ERT  N+ ADLNHGS+    ++L  +R    R    + DV VL+   ERL + CE     +  +      A +N G     Y+  RR +  A     AVV++ ++L+NK+E AP  +  +E++LN+G  G  V++ Y+     +   L Y+  ++ RYPE D   FP P E +P F  P G  +E        P P F +FV T  +  + Y A +TFYE
Sbjct:  194 AYGFASVMDD----RRVADYFVVAG-LPDNPLPL-EEFSNEAAIKPTYKQDPITDIAVIDKTLGEKVPKGYTCIERTQSNYLADLNHGSIRCHEMFLCCKR---GRDKPPLTDVGVLYEGKERLMSECE-----IVHTTPWGSPANVNNGSNGRIYITFRRARETAASDTLAVVDVVIILQNKNEVAPHAYHKIEKNLNRGMVGSDVFVCYKKAMVKADI-LAYKPGLIQRYPEEDYENFPLPPE-VPQFCLPMGSSIECWSAKAQHPLPVFSTFVLTLANNEKVYGAAVTFYE 471          
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Match: UPI00096B3440 (LOW QUALITY PROTEIN: DENN domain-containing protein 4C n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B3440)

HSP 1 Score: 137 bits (345), Expect = 1.790e-31
Identity = 98/290 (33.79%), Postives = 150/290 (51.72%), Query Frame = 1
Query:  313 DFEKVVDYFAVIGPRPHGDLELLDEEQNTPDMLRCVW-EAAITDIAVVRPSKGESCPDGYELLERTPGNHRADLNHGSMHRA-VYLAVRRQHMSRRSDYIADVQVLFPQHERLPACEPGWELVTRSVSGRHRAKLNKGGEHAYLAVRRVQRDAVDCPPAVV-NLCVVLKNKDETAPRGWRLLERDLNKGKFGDVVYLAYELGPPFSTARLPYRSVILDRYPEVDNPVFPFPQEQLPMFVYPKGMLLEHRETNDT-PKPTFFSFVFTNVDGR-RTYAACLTFYEPLPSSDV 1167
            D  ++ DYF V G  P     L D   +   +L+    +A ITDI ++ P  GE+ PD YE++++TP   +ADLNHGS+     YL +RR    R    + D+ V++   E L A     E+V +SV G + A +N      ++  RR     + C   VV ++C+V+ +K E+ P  +  + ++LNKG  G  V+L Y+     + + L Y+  +L RYP  D P FPFP + + +F  P G  LE      T P+P F +FV T  D + + Y + LTFYE  P   +
Sbjct:    2 DDRRIADYFVVAG-LPDDPEPLDDTTLSEGGLLKASHGQAPITDIGIIFPELGETKPDDYEIIKKTPTGLQADLNHGSIRSTECYLCIRR---GRDKPPLVDIGVMYEGKEWLMADA---EVVKQSVGG-NVANVNNSTAETFITFRR-GTSTMPCNALVVTDICIVIASKGESPPHAFCCINKNLNKGIVGSDVFLCYKKSMNRAKS-LTYKPGVLSRYPHTDLPNFPFPTK-VSLFCLPMGSTLELWPREATHPRPVFSTFVLTVSDAKHKIYGSALTFYEQYPEEKL 280          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5278.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH16_9PHAE9.690e-8456.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F8_ECTSI5.700e-5151.80UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9CQX3_9STRA3.410e-4236.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T7D8_9STRA5.880e-4236.86UDENN n=1 Tax=Nannochloropsis gaditana TaxID=72520... [more]
A0A6J8DXY4_MYTCO1.090e-3635.36DENND4 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8DXY4... [more]
A0A7M7N8E0_STRPU1.370e-3434.00Uncharacterized protein n=6 Tax=Echinacea TaxID=76... [more]
A0A8J1TW55_OWEFU1.550e-3334.38Ofus.G07215 protein n=1 Tax=Owenia fusiformis TaxI... [more]
A0A8B8DS26_CRAVI1.250e-3234.75C-myc promoter-binding protein-like isoform X1 n=5... [more]
K1PW18_CRAGI2.230e-3234.35C-myc promoter-binding protein n=1 Tax=Crassostrea... [more]
UPI00096B34401.790e-3133.79LOW QUALITY PROTEIN: DENN domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5278contigP-wetherbeei_contig5278:186..3631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3F8
Preferred nameSCD1
PFAMsDENN,MORN,WD40,dDENN,uDENN
Model size1191
Max annot lvl2759|Eukaryota
KEGG koko:K20161
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons7
Evalue3.03e-52
EggNOG OGsCOG5253@1|root,KOG2127@1|root,KOG0229@2759|Eukaryota,KOG2127@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size1074
COG categoryL
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5278.1.2prot_P-wetherbeei_contig5278.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5278 186..3514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.0505435-CDS-P-wetherbeei_contig5278:185..3471683186791.0505435-CDS-P-wetherbeei_contig5278:185..347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5278 186..347 -
1683186791.070818-CDS-P-wetherbeei_contig5278:1127..12151683186791.070818-CDS-P-wetherbeei_contig5278:1127..1215Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5278 1128..1215 -
1683186791.0853634-CDS-P-wetherbeei_contig5278:1467..16911683186791.0853634-CDS-P-wetherbeei_contig5278:1467..1691Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5278 1468..1691 -
1683186791.0958374-CDS-P-wetherbeei_contig5278:2010..21601683186791.0958374-CDS-P-wetherbeei_contig5278:2010..2160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5278 2011..2160 -
1683186791.1065795-CDS-P-wetherbeei_contig5278:2689..28431683186791.1065795-CDS-P-wetherbeei_contig5278:2689..2843Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5278 2690..2843 -
1683186791.1170845-CDS-P-wetherbeei_contig5278:3104..31741683186791.1170845-CDS-P-wetherbeei_contig5278:3104..3174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5278 3105..3174 -
1683186791.127894-CDS-P-wetherbeei_contig5278:3288..35141683186791.127894-CDS-P-wetherbeei_contig5278:3288..3514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5278 3289..3514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.136159-UTR-P-wetherbeei_contig5278:3514..36311683186791.136159-UTR-P-wetherbeei_contig5278:3514..3631Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5278 3515..3631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5278.1.2

>prot_P-wetherbeei_contig5278.1.2 ID=prot_P-wetherbeei_contig5278.1.2|Name=mRNA_P-wetherbeei_contig5278.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=358bp
MAMPDGTSPSPGRPPTSPTPQPQRSPARRSPKPGGLLHTQSPPTRRKKCQ
AHGARGLGSNKDDGDDFEKVVDYFAVIGPRPHGDLELLDEEQNTPDMLRC
VWEAAITDIAVVRPSKGESCPDGYELLERTPGNHRADLNHGSMHRAVYLA
VRRQHMSRRSDYIADVQVLFPQHERLPACEPGWELVTRSVSGRHRAKLNK
GGEHAYLAVRRVQRDAVDCPPAVVNLCVVLKNKDETAPRGWRLLERDLNK
GKFGDVVYLAYELGPPFSTARLPYRSVILDRYPEVDNPVFPFPQEQLPMF
VYPKGMLLEHRETNDTPKPTFFSFVFTNVDGRRTYAACLTFYEPLPSSDV
GCVLYLS*
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mRNA from alignment at P-wetherbeei_contig5278:186..3631-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5278.1.2 ID=mRNA_P-wetherbeei_contig5278.1.2|Name=mRNA_P-wetherbeei_contig5278.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3446bp|location=Sequence derived from alignment at P-wetherbeei_contig5278:186..3631- (Phaeothamnion wetherbeei SAG_119_79)
TGTTTGCGAGAGAGTAAAGACGTTCGCATTGTCGAACGGCTGAGAAGTTC ACTTCAAAGCAAAGCTGCAAATGGATTTAGAAAAAAGTTGAAAATTCCGC TTGTGCGATAGGCGAAGATGGCCATGCCGGATGGGACGAGCCCCAGTCCC GGCAGACCTCCGACGTCGCCAACGCCGCAGCCACAGCGCAGCCCAGCGCG CCGGAGCCCCAAGCCCGGCGGTCTTCTTCACACGCAAAGTCCTCCGACGA GACGTAAGAAGTGCCAGGCGCACGGCGCTCGCGGCCTCGGCAGCAACAAA GATGATGGCGATGACTTTGAAAAAGTCGTCGACTATTTTGCCGGTGAGCT CAACTTTCTCTGAATGTAGAAGTGCGGTAACGGGGTTGACCCTGCCCGGA GAAGGCAGATCAGGCCACTTTTAAGAAGCCACCTTTCCCAAATTGACCCC TTTTCAGTTATTGGACCGCGACCCCACGGCGACCTGGAGCTGCTCGACGA GGAGCAGAATACGCCCGACATGCTGAGGTAAGAAACGCAATTCCGCAGTA CCGCTTTTGCGTATAGCGGTGATCAGCCTTCAGCGAGAACGGGCACAAAG ACAGGCTCAGCCTTTGTCTCGTCCAGACTGATAACGTTACGTATTTTTAG ATACCTGGGGTTCTCGTCCGATGGCGAGATGGGGGAAGACATATCATTGC AGCTCAATTCGGACTGCATGGCCAAAAGTCAAATCAACCGTTTCACCTCT TCCTCTCTCTCTCTCCTCTCCTGGAACCAACGCAAAAGGTGCGTGTGGGA GGCGGCCATCACGGACATCGCCGTGGTGCGGCCCAGCAAGGGGGAGTCAT GCCCCGACGGCTACGAGCTGCTGGAACGGACGCCCGGAAACCATCGCGCC GACCTCAACCATGGCTCCATGCACCGAGCAGTTTACCTGGCGGTGAGGGA CCCGCTCTGGCTGTTAGGCAACCCCAAAAAAGTCGTTTGCTTTTTTTTCT TATTGTGTATGTTTTCGCTTTTTCTCTGTTGTATAGCGAGCCCTCTGCTG AAGTTGCGTTTGGCGGTTGTCATCTCATCGCCTTACATTTCTTCGAAGGA ATGCTGTTACTCAGCAGTATGTCAGCATTCGCCTCGTGGGACTGCCTCAC CGCCTTGCTGTACAGAGCGGCACAGCGCCTTTCTCACGATTGCCCTTAAT ATATCAATTTGTGCCTATTGCACTGCAATGGTGCCGGAAAATGCTGGCCG CTCCGTTCACGGGCGGACCGTCATATTGCTCGGCTCCGGACCACGTCTTC CGCTGCGCTGGACTGGGCTGGGCTGGACTGGACTGGACTGGATCGCGCTG GATCGGGTTGCGCTGGGCCGTGCGGGACTGCACTGAACTGGGCTGGATGG ACACCGCCTCCTCATGCCAACTCTGGTGACTGACCGACCGGCGGCCTGGC TGGGCGGACGCCTCGCCTCAGGTTCGGCGGCAGCACATGAGCCGGCGGTC GGACTACATCGCGGACGTGCAGGTGCTGTTCCCGCAGCACGAGCGGCTGC CGGCGTGCGAACCCGGATGGGAACTCGTCACCCGCTCCGTCTCGGGCCGC CACCGTGCTAAGCTCAACAAGGTCAGCGAGTCCGGCTCGGTGTCGATTCG TTCCAGCGGCTGGTCTCTCAATCTCGTTTGGGTTCGATCTCTTTCTCTCG CCCGCTTTAACGCTCGTCGTTGGTTGCACAAGTGGGTGGTGTGGGATGAG GTGTTGTTTTTGGTTTTGTAGGAAGCTTGGATTTTTGGCTGCGGTTCCTC TGATCTTTTTTGCTCATTTCCTGGGTGAGAGTGAGCCGAGGATGCTGGGA CGGCGCGCGGTATCACTGCTTCACATCGAGTGTTTCTCCCCTCCAACAAT GGCGCTGCGGAACGGACCCATCCACTTGGGGACTCTGCAGGGCGGTGAGC ACGCCTACCTGGCGGTGCGGCGCGTGCAGCGGGATGCCGTGGACTGCCCG CCGGCGGTAGTGAACCTCTGCGTGGTGCTCAAAAACAAGGACGAGACGGC GCCGCGCGGCTGGCGGCTGCTAGAGCGTGATCTCAACAAGGGGAAGTTCG GTGACGTCGTCTACCTCGCCTACGAGCTGGGCCCGCCCTTCAGCACGGCG CGCCTGCCGTACAGGTGCGTGCTGCGTGTGCCCTTTCTGGGGGAGGAAGT ATTGAGGGAGTTTCTAAATATCTTCTTTCCCTTTCTAGCTGTCTGTCTTC TTTCGCTTGCGAAAAGTAGCCTGCGACATCTGTGCTCTACCGTTTCCCCT TAGAACGTTAACATCGAACTCTAACGCGCGAAAGTTGACTAGATGGGAGA GCAAGCGATCCAGTTTTAGTCGGTTACGTATCTCTTCTTTTGCCTCGTTG CTTCCAATCCCTGCAGGAGCGTCATCCTGGACCGATACCCGGAGGTGGAC AACCCCGTCTTCCCCTTCCCGCAAGAGCAGCTGCCCATGTTTGTCTACCC GAAGGTGAGAAGTCAATCCCAGCAGCGACTGGGGCGACGGCGGCCGCGAC GGCAGCAGCAACGGCCGCGGCGGCTGCGGTAGCGGCGGTGGCAGTGACAG CGACGGCGGTGGCAACAGCGCCGGCAGTAGTAGTGATGGTGGCAGCGGCC ATGGCGGCGGTAGCGGCGGCGGCAGCGGCGGCGGCAACGGCGGCGGCGGC GGCGATGACCACTATGGCAGCAGCAGCAGTAGTGGCAGCAGCTGCGCGGT GGCTCGCGATGGCGGCACTGGCGGTATTGGCGACGATGGGGCGGCGGTGA CGATGGCGACGGCTGCGGCGCCGGCAAGGCGATGGCGACAGCAGCGGCGG CTGTAGAAGCGGCAGTGACTGCGGGCGCAGCTGTTGCATCGGCTGCTACG GCGGTGGCGGCGATAGTGATGGCAGCGATGCCAGCAGCTGCTACGGTCGC GCGTGGCAGTTGTGGTAGCGGCGATGGTGACAACGACATTGACGGCAGTG GCAGTGGCGGCAGCTGCAGCGATGGAGGTGGCAGGACTACGGCAACGGTT GTGGTGGTGGCCGCGGTGGTGGTTACGGTGGCGGCCGCGTCGCTGTCTGT ACGGCTTCGCCTTTCCAAATCTATGAGGAGCTATTTGAGTGCCACTGGTA CGGCAACCCCAGCGAGAAAGAGACTGCTGTGGTCCGCCCCCGGCTCCTTG GAAGGGGGATGACACCAGTCTGATTACCTTCCTAGCTCTCCTCTTCTTTT TTGTGTAACGTATTCTCTGTGGCCCGCCTCGCAGGGCATGCTGCTGGAGC ACCGGGAGACGAACGACACACCCAAGCCGACCTTTTTCTCCTTCGTCTTC ACCAACGTCGATGGCCGCCGCACATATGCCGCCTGTCTCACTTTCTACGA GCCGCTGCCATCCTCCGACGTTGGGTGCGTGCTATACCTTTCTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5278:186..3631-

>mRNA_P-wetherbeei_contig5278.1.2 ID=mRNA_P-wetherbeei_contig5278.1.2|Name=mRNA_P-wetherbeei_contig5278.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig5278:186..3631- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCATGCCGGATGGGACGAGCCCCAGTCCCGGCAGACCTCCGACGTC
GCCAACGCCGCAGCCACAGCGCAGCCCAGCGCGCCGGAGCCCCAAGCCCG
GCGGTCTTCTTCACACGCAAAGTCCTCCGACGAGACGTAAGAAGTGCCAG
GCGCACGGCGCTCGCGGCCTCGGCAGCAACAAAGATGATGGCGATGACTT
TGAAAAAGTCGTCGACTATTTTGCCGTTATTGGACCGCGACCCCACGGCG
ACCTGGAGCTGCTCGACGAGGAGCAGAATACGCCCGACATGCTGAGGTGC
GTGTGGGAGGCGGCCATCACGGACATCGCCGTGGTGCGGCCCAGCAAGGG
GGAGTCATGCCCCGACGGCTACGAGCTGCTGGAACGGACGCCCGGAAACC
ATCGCGCCGACCTCAACCATGGCTCCATGCACCGAGCAGTTTACCTGGCG
GTTCGGCGGCAGCACATGAGCCGGCGGTCGGACTACATCGCGGACGTGCA
GGTGCTGTTCCCGCAGCACGAGCGGCTGCCGGCGTGCGAACCCGGATGGG
AACTCGTCACCCGCTCCGTCTCGGGCCGCCACCGTGCTAAGCTCAACAAG
GGCGGTGAGCACGCCTACCTGGCGGTGCGGCGCGTGCAGCGGGATGCCGT
GGACTGCCCGCCGGCGGTAGTGAACCTCTGCGTGGTGCTCAAAAACAAGG
ACGAGACGGCGCCGCGCGGCTGGCGGCTGCTAGAGCGTGATCTCAACAAG
GGGAAGTTCGGTGACGTCGTCTACCTCGCCTACGAGCTGGGCCCGCCCTT
CAGCACGGCGCGCCTGCCGTACAGGAGCGTCATCCTGGACCGATACCCGG
AGGTGGACAACCCCGTCTTCCCCTTCCCGCAAGAGCAGCTGCCCATGTTT
GTCTACCCGAAGGGCATGCTGCTGGAGCACCGGGAGACGAACGACACACC
CAAGCCGACCTTTTTCTCCTTCGTCTTCACCAACGTCGATGGCCGCCGCA
CATATGCCGCCTGTCTCACTTTCTACGAGCCGCTGCCATCCTCCGACGTT
GGGTGCGTGCTATACCTTTCTTAG
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