mRNA_P-wetherbeei_contig5264.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5264.2.1
Unique NamemRNA_P-wetherbeei_contig5264.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5264.2.1 vs. uniprot
Match: D7G813_ECTSI (MATE efflux family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G813_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.620e-5
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 LATAGLVVTPMLLPVVCKSAEVQTLVRQEFLMALGAFPICCLVWTWDK 144
            LA    +V P LL VVC+S EV  LV Q F   L AFP+CC+VWTWD 
Sbjct:  450 LAACSRLVFPALLSVVCQSREVAALVSQVFPTILYAFPMCCVVWTWDS 497
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5264.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G813_ECTSI2.620e-556.25MATE efflux family protein n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5264contigP-wetherbeei_contig5264:1259..1740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G813
Model size482
Max annot lvl2880.D7G813|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.73e-05
EggNOG OGsCOG0534@1|root,KOG1347@2759|Eukaryota
Descriptionantiporter activity
Cds size306
COG categoryV
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.4703462-UTR-P-wetherbeei_contig5264:1258..14041683186788.4703462-UTR-P-wetherbeei_contig5264:1258..1404Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5264 1259..1404 -
1683186788.4932806-UTR-P-wetherbeei_contig5264:1710..17401683186788.4932806-UTR-P-wetherbeei_contig5264:1710..1740Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5264 1711..1740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.4820302-CDS-P-wetherbeei_contig5264:1404..17101683186788.4820302-CDS-P-wetherbeei_contig5264:1404..1710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5264 1405..1710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5264.2.1prot_P-wetherbeei_contig5264.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5264 1405..1710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5264.2.1

>prot_P-wetherbeei_contig5264.2.1 ID=prot_P-wetherbeei_contig5264.2.1|Name=mRNA_P-wetherbeei_contig5264.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
MLLPVVCKSAEVQTLVRQEFLMALGAFPICCLVWTWDKCVAKTYNGYGWR
SSCCDDVSLLLSEPLLLLPPSGLWFEAGCSAARLLFCPFLRALSWSVWRC
C*
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mRNA from alignment at P-wetherbeei_contig5264:1259..1740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5264.2.1 ID=mRNA_P-wetherbeei_contig5264.2.1|Name=mRNA_P-wetherbeei_contig5264.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=482bp|location=Sequence derived from alignment at P-wetherbeei_contig5264:1259..1740- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCGACGGCGGGACTGGTGGTGACGCCGATGCTGCTGCCGGTGGTGTG
CAAGTCGGCAGAGGTGCAGACGCTCGTGCGGCAGGAATTCCTGATGGCTT
TAGGGGCATTCCCCATTTGCTGCCTCGTCTGGACTTGGGACAAATGCGTG
GCGAAAACTTACAACGGTTACGGGTGGCGGTCTAGCTGTTGCGATGATGT
TTCGTTGCTTTTGTCTGAACCGTTGCTTTTGCTGCCGCCCAGCGGTTTGT
GGTTCGAGGCCGGGTGCAGTGCGGCTAGATTGCTGTTTTGCCCTTTTTTG
CGTGCTCTTTCCTGGTCCGTGTGGCGGTGCTGCTGAACCAGAGGTGCAGC
GGATAGGCCGCTCGGTACTTCTGTTGGCCAAATCTATGCAGGCGCGCGAC
TGAATGCACCTCTTCTCTCCCGTTTACGGCCCTCTTTCCTCTGTCCCGTC
TCATTGCGGCACCCATCGTTGCTCACAGCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5264:1259..1740-

>mRNA_P-wetherbeei_contig5264.2.1 ID=mRNA_P-wetherbeei_contig5264.2.1|Name=mRNA_P-wetherbeei_contig5264.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig5264:1259..1740- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTGCCGGTGGTGTGCAAGTCGGCAGAGGTGCAGACGCTCGTGCG
GCAGGAATTCCTGATGGCTTTAGGGGCATTCCCCATTTGCTGCCTCGTCT
GGACTTGGGACAAATGCGTGGCGAAAACTTACAACGGTTACGGGTGGCGG
TCTAGCTGTTGCGATGATGTTTCGTTGCTTTTGTCTGAACCGTTGCTTTT
GCTGCCGCCCAGCGGTTTGTGGTTCGAGGCCGGGTGCAGTGCGGCTAGAT
TGCTGTTTTGCCCTTTTTTGCGTGCTCTTTCCTGGTCCGTGTGGCGGTGC
TGCTGA
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