prot_P-wetherbeei_contig52460.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig52460.1.1
Unique Nameprot_P-wetherbeei_contig52460.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length175
Homology
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: UPI001C3D4C77 (squalene synthase HpnC n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D4C77)

HSP 1 Score: 265 bits (678), Expect = 6.460e-87
Identity = 128/175 (73.14%), Postives = 139/175 (79.43%), Query Frame = 0
Query:    1 MATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 175
            MAT+Y FCR TDD+GDEG   P ERL ALD WE +LR A  G   G    A+A++I RR L L PF RLIEANRMDQRRSRWDT  ELLDYCRHSATPVGEMVLGVLGYRDRWRV +SD TC GLQLVNFWQDIARDLR+RDR+YLPR  M  FGV+EDDLRR AAT  +RALVA
Sbjct:   39 MATVYAFCRATDDLGDEGPDGPGERLVALDRWEDELRRAAGGGAAGPLARAVADVIERRGLALDPFTRLIEANRMDQRRSRWDTHEELLDYCRHSATPVGEMVLGVLGYRDRWRVAMSDHTCVGLQLVNFWQDIARDLRERDRVYLPRAAMAAFGVTEDDLRRAAATPAVRALVA 213          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: UPI001C3E34B8 (squalene synthase HpnC n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E34B8)

HSP 1 Score: 260 bits (665), Expect = 5.880e-85
Identity = 124/175 (70.86%), Postives = 137/175 (78.29%), Query Frame = 0
Query:    1 MATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 175
            M  +Y FCRTTDD+GDEG   P  RLAALDAWE  LR A DG    A   A+AEL  RR +PL  F RL+EANRMDQRRSRWDT AEL+DYCRHSATPVGEMVLGVLGYRD WR GLSD TC GLQLVNFWQD+ RDLRDRDR+YLPR+ M   GV+ DDLR PAAT G+RA++A
Sbjct:   38 MGVVYAFCRTTDDLGDEGDGGPAARLAALDAWEADLRRAADGGEAPALPAAVAELADRRGIPLDVFTRLVEANRMDQRRSRWDTHAELIDYCRHSATPVGEMVLGVLGYRDAWRTGLSDETCIGLQLVNFWQDVGRDLRDRDRVYLPREAMEAHGVTVDDLRLPAATPGVRAVIA 212          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A6I4Z7V9_9CHLR (Squalene synthase HpnC n=5 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4Z7V9_9CHLR)

HSP 1 Score: 183 bits (464), Expect = 2.120e-54
Identity = 91/158 (57.59%), Postives = 114/158 (72.15%), Query Frame = 0
Query:    4 IYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL 161
            +Y FCR TDD+GDE      +RLA LD+WE  LR AV G+P    L ALA  I R+++PL PF+RLIEANRMDQR SR+ T  ++L YC +SATPVG+MVL VLGY D  RV LSD+TC GLQL NFWQD++ D+ ++ RIYLP + + RFGV E  +
Sbjct:   56 VYAFCRYTDDLGDEAEG---DRLALLDSWEQDLRDAVGGNPRRPLLIALARTIERKEIPLDPFLRLIEANRMDQRVSRFATYEDVLTYCSYSATPVGQMVLAVLGYTDAERVALSDQTCIGLQLANFWQDVSVDI-EKGRIYLPLEDLQRFGVDEQQI 209          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A2H5YDX8_9BACT (All-trans-phytoene synthase n=1 Tax=bacterium HR23 TaxID=2035418 RepID=A0A2H5YDX8_9BACT)

HSP 1 Score: 178 bits (451), Expect = 2.520e-52
Identity = 88/175 (50.29%), Postives = 113/175 (64.57%), Query Frame = 0
Query:    1 MATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 175
            +  +Y FCRT DD+GDE +    +RLA LDAWE  LR    G P    L AL   IR  D+P+ PF++LIEANR+DQR SRW T  +LL YC HSA PVG + L + GYRD+ R  L+D TCT LQL NFWQD+ RD  ++ R+Y+P + M RFG +E++L R       R L+A
Sbjct:   56 VCALYAFCRTVDDLGDEASG---DRLALLDAWEADLRLCYTGTPRHPYLKALQATIRAFDIPITPFLKLIEANRLDQRHSRWPTYQDLLFYCDHSANPVGHLFLYLFGYRDQERQRLADATCTALQLTNFWQDVRRDW-EKGRVYIPMEDMARFGYTEEELARGVVNDAFRRLMA 226          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A7Y5H7L8_9BACT (Squalene synthase HpnC n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A7Y5H7L8_9BACT)

HSP 1 Score: 176 bits (447), Expect = 5.220e-52
Identity = 89/164 (54.27%), Postives = 109/164 (66.46%), Query Frame = 0
Query:    4 IYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL--RRPA 165
            +Y FCRTTDD+GDE    P +RLAALD WE ++R A +G      L AL    R + L L PF+RLIEANRMDQR++RW + A+L  YC HSA PVG MVLG+ G  D  R  LSD  CTGLQL N WQD+ RD  ++ RIYLP + + R GV E D+  RRP+
Sbjct:   46 VYAFCRTTDDLGDEA---PGDRLAALDDWERRVRAAWEGGAREPILAALGRTAREKQLRLEPFLRLIEANRMDQRQTRWASGADLRRYCAHSADPVGRMVLGLFGQDDERRGALSDEICTGLQLANHWQDVGRDAVEKGRIYLPLEDLRRHGVPEADILARRPS 206          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A662EWW5_9BACT (Squalene synthase HpnC (Fragment) n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A662EWW5_9BACT)

HSP 1 Score: 176 bits (445), Expect = 1.270e-51
Identity = 92/174 (52.87%), Postives = 112/174 (64.37%), Query Frame = 0
Query:    1 MATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALV 174
            +A +Y FCRT DDIGDE    P +R+A LD +E +L+ A  G P    + AL + I   DLP  PF++LIEANR+DQR  R+    ELL YC HSA PVG + L + GYRD     LSD TCT LQL NFWQDI RD  +  RIYLP+D+M RFGVSE D+    A   +RALV
Sbjct:   52 IAAVYAFCRTVDDIGDEA---PGDRIALLDRFEEELQSAYSGSPRHPVIVALKQTIAEFDLPAEPFLKLIEANRIDQRVHRYANFGELLHYCDHSANPVGRLFLMLYGYRDEELFRLSDNTCTALQLTNFWQDIRRDY-EMGRIYLPQDEMERFGVSESDIAATRANERVRALV 221          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A7V8E861_9BACT (Squalene n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V8E861_9BACT)

HSP 1 Score: 175 bits (443), Expect = 1.920e-51
Identity = 89/158 (56.33%), Postives = 105/158 (66.46%), Query Frame = 0
Query:    4 IYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL 161
            +Y FCRTTDDIGDE +    +RLAALDAWE  +R    G+P    L ALA  IR R L   PF+RLIEANRMDQR+SRW+T  +L  YC HSA PVG MVLG+ G  D  R  LSD  CTGLQL N WQD+ RD  ++ RIYLP + +   GV E D+
Sbjct:   43 VYAFCRTTDDIGDEASG---DRLAALDAWEKDVRKCWGGEPAELMLVALARTIRERKLRQDPFLRLIEANRMDQRQSRWETWDDLRLYCAHSADPVGRMVLGLFGQDDAKRGPLSDAICTGLQLANHWQDVGRDAAEKGRIYLPLEDLEAHGVKEADV 197          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A523Z022_9CHLR (Squalene synthase HpnC n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A523Z022_9CHLR)

HSP 1 Score: 175 bits (443), Expect = 3.910e-51
Identity = 89/161 (55.28%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    1 MATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL 161
            M  +Y +CR  DD+GDE      +RLA LD W  ++R   DG P   A  AL E I R D+P  PF+RLIEANRMDQR +R+ T  ELL YC +SA PVG +VL + GYRD  R  LSD TCT LQL NFWQD+ RDL D+ RIY+P ++M RFG SE DL
Sbjct:   58 MYAVYAYCRGVDDLGDEAEG---DRLALLDDWGAEVRRCYDGSPRHPAFVALRETIHRFDIPQEPFLRLIEANRMDQRVNRYRTYGELLGYCENSANPVGHLVLHLFGYRDEERQRLSDATCTALQLTNFWQDVRRDL-DKGRIYIPLEEMERFGYSEADL 214          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A7C2YGV9_9CHLR (Squalene synthase HpnC n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2YGV9_9CHLR)

HSP 1 Score: 173 bits (438), Expect = 1.150e-50
Identity = 89/175 (50.86%), Postives = 111/175 (63.43%), Query Frame = 0
Query:    1 MATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 175
            M  +Y +CR  DD+GDE      +RLA LD WE +LR A +G        ALA  +R   +P  PF++LIEANRMDQR+ R+ T A+LL YC HSA PVG +VL + GYRDR R  LSD TCTGLQL NFWQD++RDL +  RIY+P + M  FG  E+DL         R L+A
Sbjct:   34 MYVVYAYCRGVDDLGDEAEG---DRLALLDDWEAELRRAYEGKARHPVFVALAHTVREFRIPPEPFLKLIEANRMDQRQKRYPTYADLLRYCEHSANPVGHLVLYLFGYRDRERQRLSDATCTGLQLANFWQDVSRDL-EMGRIYIPLEDMAAFGYGEEDLLARICDERFRRLMA 204          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A662L287_9ARCH (Squalene synthase HpnC n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A662L287_9ARCH)

HSP 1 Score: 172 bits (436), Expect = 3.660e-50
Identity = 91/173 (52.60%), Postives = 110/173 (63.58%), Query Frame = 0
Query:    3 TIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 175
            ++Y F RTTDD+GDE    P +RLA LD WE +L  A  G      + AL E  R  DLP+ PF ++I+ANRMDQR +R+ T  ELL YC HSA PVG + L + GYRD     LSD+TCT LQL NFWQD+ARDL    RIY+P + M  FG SEDDLRR       R L+A
Sbjct:   54 SLYGFFRTTDDLGDEA---PGDRLALLDRWEEELEAAFQGKARHPVMVALGETAREFDLPIEPFRKIIQANRMDQRTNRYRTFDELLHYCDHSANPVGRLYLMLFGYRDEELFRLSDKTCTALQLANFWQDVARDLAC-GRIYIPLEDMDAFGYSEDDLRRKVVDGRFRKLMA 222          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D4C776.460e-8773.14squalene synthase HpnC n=1 Tax=Miltoncostaea marin... [more]
UPI001C3E34B85.880e-8570.86squalene synthase HpnC n=1 Tax=Miltoncostaea ocean... [more]
A0A6I4Z7V9_9CHLR2.120e-5457.59Squalene synthase HpnC n=5 Tax=Dehalococcoidia bac... [more]
A0A2H5YDX8_9BACT2.520e-5250.29All-trans-phytoene synthase n=1 Tax=bacterium HR23... [more]
A0A7Y5H7L8_9BACT5.220e-5254.27Squalene synthase HpnC n=1 Tax=Candidatus Brocadia... [more]
A0A662EWW5_9BACT1.270e-5152.87Squalene synthase HpnC (Fragment) n=1 Tax=Candidat... [more]
A0A7V8E861_9BACT1.920e-5156.33Squalene n=1 Tax=Planctomycetes bacterium TaxID=20... [more]
A0A523Z022_9CHLR3.910e-5155.28Squalene synthase HpnC n=1 Tax=Dehalococcoidia bac... [more]
A0A7C2YGV9_9CHLR1.150e-5050.86Squalene synthase HpnC n=1 Tax=Chloroflexi bacteri... [more]
A0A662L287_9ARCH3.660e-5052.60Squalene synthase HpnC n=1 Tax=Thermoplasmata arch... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002060Squalene/phytoene synthasePFAMPF00494SQS_PSYcoord: 2..174
e-value: 3.2E-44
score: 151.4
IPR002060Squalene/phytoene synthaseSFLDSFLDG01018Squalene/Phytoene_Synthase_Licoord: 1..172
e-value: 4.694E-43
score: 141.9
IPR008949Isoprenoid synthase domain superfamilyGENE3D1.10.600.10Farnesyl Diphosphate Synthasecoord: 1..175
e-value: 1.4E-49
score: 170.9
IPR008949Isoprenoid synthase domain superfamilySUPERFAMILY48576Terpenoid synthasescoord: 2..174
NoneNo IPR availableSFLDSFLDS00005Isoprenoid_Synthase_Type_Icoord: 1..172
e-value: 4.694E-43
score: 141.9
NoneNo IPR availablePANTHERPTHR31480BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASEcoord: 3..173
IPR017827Hydroxysqualene synthase HpnCPANTHERPTHR31480:SF17PHYTOENE SYNTHASE-RELATEDcoord: 3..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52460contigP-wetherbeei_contig52460:22..546 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52460.1.1mRNA_P-wetherbeei_contig52460.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig52460 1..546 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig52460.1.1 ID=prot_P-wetherbeei_contig52460.1.1|Name=mRNA_P-wetherbeei_contig52460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALG
ALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVG
EMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQ
MLRFGVSEDDLRRPAATAGLRALVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002060Squ/phyt_synthse
IPR008949Isoprenoid_synthase_dom_sf
IPR017827HSQ_synthase_HpnC