mRNA_P-wetherbeei_contig5246.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5246.1.1
Unique NamemRNA_P-wetherbeei_contig5246.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5246.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5246contigP-wetherbeei_contig5246:2..2129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000014545
PFAMsPeptidase_C48
Model size1993
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.97e-08
EggNOG OGsCOG5160@1|root,KOG0778@2759|Eukaryota,1MGDX@121069|Pythiales
DescriptionSUMO protease. Source PGD
Cds size537
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.9140568-UTR-P-wetherbeei_contig5246:1..3141683186785.9140568-UTR-P-wetherbeei_contig5246:1..314Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5246 2..314 +
1683186785.922876-UTR-P-wetherbeei_contig5246:449..12361683186785.922876-UTR-P-wetherbeei_contig5246:449..1236Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5246 450..1236 +
1683186785.9386508-UTR-P-wetherbeei_contig5246:1773..21291683186785.9386508-UTR-P-wetherbeei_contig5246:1773..2129Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5246 1774..2129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.930645-CDS-P-wetherbeei_contig5246:1236..17731683186785.930645-CDS-P-wetherbeei_contig5246:1236..1773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5246 1237..1773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5246.1.1prot_P-wetherbeei_contig5246.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5246 1237..1773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5246.1.1

>prot_P-wetherbeei_contig5246.1.1 ID=prot_P-wetherbeei_contig5246.1.1|Name=mRNA_P-wetherbeei_contig5246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
MAELLGGCPIGNAQASREIANFTGKTDFFSLSQLWMPVNLGGCHWLLAAI
DFIGERFVILDSMAARQSYETVFNLLAAIVQHEEANRFAAAAGFSTASWA
ACVGESRDPAAGGGGDPCGVFILMFARCLSRRKPPAFLWSTCSSAAANSS
GPLPWRHRFPLQPLEVIEEWRAWQRRRH*
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mRNA from alignment at P-wetherbeei_contig5246:2..2129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5246.1.1 ID=mRNA_P-wetherbeei_contig5246.1.1|Name=mRNA_P-wetherbeei_contig5246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2128bp|location=Sequence derived from alignment at P-wetherbeei_contig5246:2..2129+ (Phaeothamnion wetherbeei SAG_119_79)
GGTCAATGGTGGGCGTGATGCACTCTCCCGGTTCCTTGACCTTTCGTTTT
CTGCTTACATTCAGAAACATAAATATAAAGCGCCGGCATATCGCGGCGTC
AATCTTGTGGGGTCGAGCTCGCCGAGTTCGTGCGACTTATTTGCCGATCG
TGCTGCGGCGGATTCTGGATTTCTTCCAAGCAAGGCTTGCTAGAAACAGG
CGTGGCGAAAATGGCACAAGGGCGTTACTAATTGCAAGATCATTTAGCGC
GTCCGAGAGGTTCTTCTTTCCATGCAGCGCCTCATTTACCAAAGATCATC
GGACGTGAGATAGGTATGCTCGCTTCAGCAGGGGCCCTTTAGCAACGTTG
ATGCACGATATCTCTATTTCCTGTTCCTCCTCGATGCAGTTCACACGCTG
CTCTTCTTATCACTTTCAAATTATTTCTGTTCCCCCTGCTGCCATCAGTC
CTTGTGACGGCGGAGAAGGAGGCAGCGGCTACTGAAACGCAGAATGCGAG
AGCAGAAAAGCGTCAGCCGAGGCGGGCGATGCCCTCGTGCTCTGCCTCGA
GGCAGTTTGCTCGCTTCCAGCCCCCCGCCGCCACCGCCAGCAGCGGCTGC
GGCGGCGGTCATGGCAGCTGAACCACCACACCGTCGGCAAGTTCTTGCAG
CCAGTCATCGCGCCGAGACGACACAGCTGCAGCGGTGGTGCCCAGGCTCA
TCCTCGCCGTCGGCTTCGGCGATGCTGTCGCCTTTGTGCTAGTGCCTCGT
ATGGTCTAGTAGGCTCAGGACAAAGGAGCCGCCTGCCGCCTGATGCTGCA
ACTGTTGCCGTGTGGCGGTCGCCGAGGCGCTGTTCCTCTCTTTTCGAGCA
CTGCTGCCCCCTGCTTTTTAGCGATGCTGGTGGATCTTCTGGATACGCTC
TTGGCGCGCGTGCGGTCCAAAGAGCTCCGAGGCAGACGGTCAAGAAGGCC
CGGGAGTCTGATGGCGCCACCGTGCTCCTCAAAAAGGCCACCACGCACCC
GGACGTGAGTTTTGCGTCGATTTGTTACGCTGCTGCCGCTGCTGTCGGAG
GAAAAAGGCCCCGTTCCGTTTTTTCTCATTCCCGTTCAAAGGCGGCGCTG
GACCTTGGAGGACTTCTACTCGAGCACCCCGCGCGGCTGGCGGCTGGTTC
TGCTGCTGTCGGCGGCCCTGCCATCTATGGGGGGATTCGCCGCCAGGGGA
GATGCACGTTCACTACGTCCTGCTTCTTTTTGCGGATGGCTGAGCTCCTC
GGGGGTTGTCCGATTGGCAATGCTCAGGCCAGCCGCGAAATCGCGAACTT
TACCGGCAAAACTGATTTCTTTTCGCTGAGTCAGCTCTGGATGCCCGTCA
ACCTCGGCGGCTGCCACTGGCTGTTGGCAGCGATCGACTTCATCGGTGAG
CGCTTTGTGATTCTTGACTCGATGGCGGCTAGGCAGTCCTACGAGACTGT
CTTCAACCTTTTAGCCGCAATCGTGCAGCATGAGGAGGCAAACAGGTTTG
CGGCGGCGGCGGGTTTCAGCACGGCCAGTTGGGCGGCTTGCGTCGGGGAG
TCCAGAGATCCCGCAGCAGGGGGGGGTGGTGACCCCTGCGGCGTTTTTAT
CCTCATGTTTGCGCGATGCCTGAGCCGCAGGAAGCCCCCTGCCTTTCTAT
GGAGCACGTGCAGTTCTGCTGCGGCGAATTCTTCTGGGCCTTTGCCTTGG
CGACACAGATTTCCTCTCCAACCCCTCGAGGTGATTGAGGAATGGCGGGC
CTGGCAGCGGCGGCGGCATTAGCCGCGGCAGCGACGGCAGTGGCGGCGGC
GGCAATGATCTCAGACAGCGGTGGCGGCAGCAGCGACGGCAGCGATAGCG
GCGTTGACGTTGGTGACAGGGAGGGCCTCGGCCTCGGTGGCGAGGATGGC
GCAGCAGGCAGCGAAGGCACTAACGATAAATCGGCGGTGGCTCCCTCTGC
CACCGACGGTGCTGACCTGTCGGCGTCGCCCGCCTCGCCGGCCGGCAAGC
GCGGCCGTGGGCTGCCGCCAAGAATGTTAGCAATAACAGGCTTCTCCCGC
CGACGAATGGCAGGTGGCCGCTGGGGAAAGCGGTATCGTGGGATGGGCAA
GCCGTTAGCTGGTACCAGCAGTAGGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5246:2..2129+

>mRNA_P-wetherbeei_contig5246.1.1 ID=mRNA_P-wetherbeei_contig5246.1.1|Name=mRNA_P-wetherbeei_contig5246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig5246:2..2129+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAGCTCCTCGGGGGTTGTCCGATTGGCAATGCTCAGGCCAGCCG
CGAAATCGCGAACTTTACCGGCAAAACTGATTTCTTTTCGCTGAGTCAGC
TCTGGATGCCCGTCAACCTCGGCGGCTGCCACTGGCTGTTGGCAGCGATC
GACTTCATCGGTGAGCGCTTTGTGATTCTTGACTCGATGGCGGCTAGGCA
GTCCTACGAGACTGTCTTCAACCTTTTAGCCGCAATCGTGCAGCATGAGG
AGGCAAACAGGTTTGCGGCGGCGGCGGGTTTCAGCACGGCCAGTTGGGCG
GCTTGCGTCGGGGAGTCCAGAGATCCCGCAGCAGGGGGGGGTGGTGACCC
CTGCGGCGTTTTTATCCTCATGTTTGCGCGATGCCTGAGCCGCAGGAAGC
CCCCTGCCTTTCTATGGAGCACGTGCAGTTCTGCTGCGGCGAATTCTTCT
GGGCCTTTGCCTTGGCGACACAGATTTCCTCTCCAACCCCTCGAGGTGAT
TGAGGAATGGCGGGCCTGGCAGCGGCGGCGGCATTAG
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