mRNA_P-wetherbeei_contig52365.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52365.1.1
Unique NamemRNA_P-wetherbeei_contig52365.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig52365.1.1 vs. uniprot
Match: A0A3D1R5J5_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1R5J5_9DELT)

HSP 1 Score: 74.7 bits (182), Expect = 1.670e-12
Identity = 68/191 (35.60%), Postives = 96/191 (50.26%), Query Frame = 1 
Query:    1 GAVRFYDAV-LSLEGQRTYPAPA--------SWQIEKDSIGATYHNFALASVRTETKGRQFKAKKGGWITADGTTATAETVY--SLRTAVDSSGKAREGLLYGISALRAGTRMSGAIEGSEE-DLKAVLDILLGAHLRLGRSRNQELGLVKVTRRQS-PVKALADGAAESKTISFLCVSRCIFRDVATGAP 534
            GAVRF  A+ L  +G    P P         S + E D +  +  N   A +R E  G Q K  + G++  DG     E  +  S+RTAVD  G+AREG LY ISA+ AGT +   ++  +E  L  V   ++   +RLGRSRN E G  ++    + P  A   GA +++   FLC+S    RD A+G P
Sbjct:   61 GAVRFGAALPLGSDGAPCVPMPLALHYPKGESAKAESDRLSKSVLNLPRA-MRKE--GVQLKQLREGFL--DGALKVTEPSFRSSMRTAVD-GGRAREGFLYTISAMPAGTVLLARVDADDEAGLAEVRQRIVEREVRLGRSRNAEFGRARIEEAGAVPEGARRAGAPKAEEALFLCLSDLCLRDAASGQP 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52365.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D1R5J5_9DELT1.670e-1235.60Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52365contigP-wetherbeei_contig52365:2..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size540
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.6554601-CDS-P-wetherbeei_contig52365:1..5411683186784.6554601-CDS-P-wetherbeei_contig52365:1..541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52365 2..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52365.1.1prot_P-wetherbeei_contig52365.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52365 2..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52365.1.1

>prot_P-wetherbeei_contig52365.1.1 ID=prot_P-wetherbeei_contig52365.1.1|Name=mRNA_P-wetherbeei_contig52365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
GAVRFYDAVLSLEGQRTYPAPASWQIEKDSIGATYHNFALASVRTETKGR
QFKAKKGGWITADGTTATAETVYSLRTAVDSSGKAREGLLYGISALRAGT
RMSGAIEGSEEDLKAVLDILLGAHLRLGRSRNQELGLVKVTRRQSPVKAL
ADGAAESKTISFLCVSRCIFRDVATGAPRL
back to top

mRNA from alignment at P-wetherbeei_contig52365:2..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52365.1.1 ID=mRNA_P-wetherbeei_contig52365.1.1|Name=mRNA_P-wetherbeei_contig52365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52365:2..541- (Phaeothamnion wetherbeei SAG_119_79)
GGGGCTGTACGTTTCTATGATGCAGTTCTCAGCCTGGAAGGACAGCGAAC
CTATCCTGCTCCGGCGTCCTGGCAAATTGAAAAAGACAGCATCGGAGCTA
CCTATCATAACTTCGCCCTCGCGAGCGTGAGGACCGAAACTAAGGGACGC
CAATTTAAGGCGAAGAAAGGCGGCTGGATAACAGCTGACGGAACAACCGC
AACCGCGGAGACCGTCTACTCCCTCCGGACCGCCGTCGATTCCTCTGGTA
AGGCGCGAGAAGGTTTGCTGTATGGCATCTCCGCTCTACGGGCCGGGACT
CGAATGTCGGGAGCCATCGAAGGTTCCGAAGAAGATCTGAAGGCCGTCCT
TGATATTCTTTTGGGTGCCCATTTGAGGTTAGGGCGTTCGCGGAATCAAG
AGCTAGGACTGGTGAAGGTCACCAGAAGGCAGAGCCCAGTAAAGGCACTT
GCGGACGGGGCGGCGGAGTCGAAGACGATCTCGTTCCTATGCGTGTCTCG
CTGTATTTTTAGGGACGTAGCCACAGGCGCCCCACGTCTA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig52365:2..541-

>mRNA_P-wetherbeei_contig52365.1.1 ID=mRNA_P-wetherbeei_contig52365.1.1|Name=mRNA_P-wetherbeei_contig52365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52365:2..541- (Phaeothamnion wetherbeei SAG_119_79)
GGGGCTGTACGTTTCTATGATGCAGTTCTCAGCCTGGAAGGACAGCGAAC
CTATCCTGCTCCGGCGTCCTGGCAAATTGAAAAAGACAGCATCGGAGCTA
CCTATCATAACTTCGCCCTCGCGAGCGTGAGGACCGAAACTAAGGGACGC
CAATTTAAGGCGAAGAAAGGCGGCTGGATAACAGCTGACGGAACAACCGC
AACCGCGGAGACCGTCTACTCCCTCCGGACCGCCGTCGATTCCTCTGGTA
AGGCGCGAGAAGGTTTGCTGTATGGCATCTCCGCTCTACGGGCCGGGACT
CGAATGTCGGGAGCCATCGAAGGTTCCGAAGAAGATCTGAAGGCCGTCCT
TGATATTCTTTTGGGTGCCCATTTGAGGTTAGGGCGTTCGCGGAATCAAG
AGCTAGGACTGGTGAAGGTCACCAGAAGGCAGAGCCCAGTAAAGGCACTT
GCGGACGGGGCGGCGGAGTCGAAGACGATCTCGTTCCTATGCGTGTCTCG
CTGTATTTTTAGGGACGTAGCCACAGGCGCCCCACGTCTA
back to top