mRNA_P-wetherbeei_contig52284.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52284.1.1
Unique NamemRNA_P-wetherbeei_contig52284.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: UPI00191586BC (endonuclease/exonuclease/phosphatase family protein n=2 Tax=unclassified Luteimonas TaxID=2629088 RepID=UPI00191586BC)

HSP 1 Score: 105 bits (261), Expect = 3.000e-27
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    4 RPTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLPL 237
            RP ++ GDLNDVAWS+TT  F+   GL DPR  RG FNT+ A +PGLR+PLD++FH+ HFT+  M  LP   SDH P+
Sbjct:   12 RPVIVAGDLNDVAWSRTTRLFRKVSGLLDPRIGRGMFNTFHAKLPGLRWPLDHLFHSEHFTLVSMERLPAVGSDHFPI 89          
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: UPI0001A30C20 (endonuclease/exonuclease/phosphatase family protein n=1 Tax=Rhodothermus marinus TaxID=29549 RepID=UPI0001A30C20)

HSP 1 Score: 104 bits (260), Expect = 2.000e-26
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    7 PTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLPL 237
            P ++ GDLNDVAWS TT  F+   GL DPRR RGFFNTY A  P LR+PLD++FH++HF ++ +R LP + SDH P+
Sbjct:   75 PVIVAGDLNDVAWSSTTRLFQRVSGLLDPRRGRGFFNTYHARWPLLRWPLDHVFHSKHFWLRRLRRLPYWGSDHFPV 151          
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: UPI00200E1883 (endonuclease/exonuclease/phosphatase family protein n=1 Tax=unclassified Marinobacter TaxID=83889 RepID=UPI00200E1883)

HSP 1 Score: 104 bits (260), Expect = 2.330e-26
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 DRPTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLPL 237
            D+PT++ GDLNDVAWS TT  F+   GL DPR  RG F+T+ A  P +R+PLD++FH+ HFTVK++R LP   SDH PL
Sbjct:   73 DQPTIVTGDLNDVAWSPTTRLFRKISGLLDPRVGRGMFSTFHAKYPFMRWPLDHLFHSEHFTVKDIRRLPDIGSDHFPL 151          
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: A0A2E0YZZ8_9GAMM (Endonuclease n=1 Tax=Halioglobus sp. TaxID=2024834 RepID=A0A2E0YZZ8_9GAMM)

HSP 1 Score: 107 bits (268), Expect = 3.580e-26
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 RPTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLPL 237
            RP V+ GDLNDVAWS TT  F+   GL DPR  RG FNT+ AG P LR+PLD++FH+RHFT+++MR LP+  SDH  L
Sbjct:  237 RPVVVTGDLNDVAWSPTTRLFRKLSGLLDPRVGRGMFNTFHAGYPFLRWPLDHLFHSRHFTLRDMRRLPKIGSDHFAL 314          
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: A0A1B4VCJ8_9GAMM (Endonuclease n=2 Tax=Sulfurifustis variabilis TaxID=1675686 RepID=A0A1B4VCJ8_9GAMM)

HSP 1 Score: 107 bits (266), Expect = 6.530e-26
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 DRPTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLP 234
            D PT++ GDLNDVAWS TT+ F+   GL DPR+ RG FNT+ A +P +R+PLD++FH+ HF V E+R LP F SDH P
Sbjct:  230 DAPTIVTGDLNDVAWSYTTTLFQKTSGLLDPRKGRGMFNTFHARIPLMRWPLDHVFHSNHFLVAELRRLPAFGSDHFP 307          
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: UPI0019B859E2 (Uncharacterized protein n=1 Tax=Halomonas qijiaojingensis TaxID=980347 RepID=UPI0019B859E2)

HSP 1 Score: 101 bits (251), Expect = 1.040e-25
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 DRPTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLPL 237
            D+P V+ GDLNDVAWS TT  F+   GL DPR  RG FNT+ A  P LR+PLD++FH+ HFTV  ++ LP F SDH  L
Sbjct:   11 DQPVVVAGDLNDVAWSATTRLFRKLSGLLDPRVGRGMFNTFHAKYPFLRWPLDHLFHSHHFTVSSIKRLPYFGSDHFAL 89          
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: A0A2A3VI11_9GAMM (Endonuclease n=1 Tax=Xanthomonadaceae bacterium NML93-0792 TaxID=2032566 RepID=A0A2A3VI11_9GAMM)

HSP 1 Score: 106 bits (264), Expect = 1.060e-25
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    7 PTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLPL 237
            P ++ GDLNDVAWS+TT  F+   GL DPR  RG FNT+ A +PGLR+PLD++FH+RHFT+  MR LP   SDH P+
Sbjct:  223 PVIVAGDLNDVAWSRTTRLFRKVSGLLDPRIGRGMFNTFHAHLPGLRWPLDHLFHSRHFTLVGMRRLPDIGSDHFPI 299          
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: A0A838DFX7_9BACT (Endonuclease/exonuclease/phosphatase family protein n=2 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A838DFX7_9BACT)

HSP 1 Score: 106 bits (264), Expect = 1.520e-25
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 DRPTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLPL 237
            DRPTV+ GDLNDVAWS TT  F    GL DPR  RGF+N++ A    LRYPLD++FH+RHFT+ ++R LP   SDH P+
Sbjct:  242 DRPTVVAGDLNDVAWSPTTELFVRLSGLLDPRVGRGFYNSFHADKVYLRYPLDHVFHSRHFTLTDLRCLPHIGSDHFPV 320          
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: A0A2N5ECG2_9GAMM (Endonuclease n=1 Tax=Chimaeribacter coloradensis TaxID=2060068 RepID=A0A2N5ECG2_9GAMM)

HSP 1 Score: 106 bits (264), Expect = 1.660e-25
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    7 PTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLPL 237
            PT++ GDLNDVAWS+TT  F    GL DPRR RG FNT+ AG+P LR+PLD++FH+R FT+  M+ LP   SDH P+
Sbjct:  253 PTIVTGDLNDVAWSRTTRLFMKVSGLLDPRRGRGMFNTFHAGIPFLRWPLDHVFHSRDFTLVRMQRLPHIGSDHFPI 329          
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Match: A0A5P9IVZ8_9GAMM (Endo/exonuclease/phosphatase domain-containing protein n=13 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A5P9IVZ8_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 1.810e-25
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    7 PTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRYPLDYIFHTRHFTVKEMRVLPRFQSDHLPL 237
            PT+I GDLNDVAWS+TT  F+   GL DPR  RG FNT+ A  P +R+PLD++FH+RHFT+ E+R LP   SDH PL
Sbjct:  238 PTLITGDLNDVAWSRTTRLFRKVSGLLDPRIGRGLFNTFHADYPLVRWPLDHLFHSRHFTLNEIRPLPNIGSDHFPL 314          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52284.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00191586BC3.000e-2756.41endonuclease/exonuclease/phosphatase family protei... [more]
UPI0001A30C202.000e-2657.14endonuclease/exonuclease/phosphatase family protei... [more]
UPI00200E18832.330e-2656.96endonuclease/exonuclease/phosphatase family protei... [more]
A0A2E0YZZ8_9GAMM3.580e-2660.26Endonuclease n=1 Tax=Halioglobus sp. TaxID=2024834... [more]
A0A1B4VCJ8_9GAMM6.530e-2657.69Endonuclease n=2 Tax=Sulfurifustis variabilis TaxI... [more]
UPI0019B859E21.040e-2556.96Uncharacterized protein n=1 Tax=Halomonas qijiaoji... [more]
A0A2A3VI11_9GAMM1.060e-2558.44Endonuclease n=1 Tax=Xanthomonadaceae bacterium NM... [more]
A0A838DFX7_9BACT1.520e-2558.23Endonuclease/exonuclease/phosphatase family protei... [more]
A0A2N5ECG2_9GAMM1.660e-2558.44Endonuclease n=1 Tax=Chimaeribacter coloradensis T... [more]
A0A5P9IVZ8_9GAMM1.810e-2559.74Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52284contigP-wetherbeei_contig52284:2..256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1216007.AOPM01000016_gene3234
PFAMsExo_endo_phos
Model size255
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.96e-26
EggNOG OGsCOG3021@1|root,COG3021@2|Bacteria,1MWFK@1224|Proteobacteria,1RPPZ@1236|Gammaproteobacteria,2Q00T@267888|Pseudoalteromonadaceae
DescriptionEndonuclease/Exonuclease/phosphatase family
Cds size255
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186784.0370562-CDS-P-wetherbeei_contig52284:1..2561683186784.0370562-CDS-P-wetherbeei_contig52284:1..256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52284 2..256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52284.1.1prot_P-wetherbeei_contig52284.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52284 2..256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52284.1.1

>prot_P-wetherbeei_contig52284.1.1 ID=prot_P-wetherbeei_contig52284.1.1|Name=mRNA_P-wetherbeei_contig52284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
DRPTVILGDLNDVAWSKTTSQFKAAGGLRDPRRERGFFNTYPAGMPGLRY
PLDYIFHTRHFTVKEMRVLPRFQSDHLPLSPLYA*
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mRNA from alignment at P-wetherbeei_contig52284:2..256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52284.1.1 ID=mRNA_P-wetherbeei_contig52284.1.1|Name=mRNA_P-wetherbeei_contig52284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig52284:2..256+ (Phaeothamnion wetherbeei SAG_119_79)
GATCGTCCAACCGTTATCCTCGGAGATCTCAATGACGTCGCATGGTCCAA GACCACTTCACAATTCAAAGCCGCTGGAGGTCTGCGCGACCCGAGGCGAG AACGCGGCTTCTTCAATACATATCCTGCGGGCATGCCGGGATTGCGCTAT CCCCTAGACTACATCTTCCACACTCGTCATTTCACTGTAAAGGAGATGCG TGTCCTTCCGCGCTTTCAGTCAGACCACCTCCCCTTATCGCCGTTATATG CCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52284:2..256+

>mRNA_P-wetherbeei_contig52284.1.1 ID=mRNA_P-wetherbeei_contig52284.1.1|Name=mRNA_P-wetherbeei_contig52284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig52284:2..256+ (Phaeothamnion wetherbeei SAG_119_79)
GATCGTCCAACCGTTATCCTCGGAGATCTCAATGACGTCGCATGGTCCAA
GACCACTTCACAATTCAAAGCCGCTGGAGGTCTGCGCGACCCGAGGCGAG
AACGCGGCTTCTTCAATACATATCCTGCGGGCATGCCGGGATTGCGCTAT
CCCCTAGACTACATCTTCCACACTCGTCATTTCACTGTAAAGGAGATGCG
TGTCCTTCCGCGCTTTCAGTCAGACCACCTCCCCTTATCGCCGTTATATG
CCTAA
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