mRNA_P-wetherbeei_contig522.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig522.2.1
Unique NamemRNA_P-wetherbeei_contig522.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: A0A0M0J3B6_9EUKA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J3B6_9EUKA)

HSP 1 Score: 125 bits (315), Expect = 8.530e-28
Identity = 99/281 (35.23%), Postives = 139/281 (49.47%), Query Frame = 3
Query:  285 MRKNEAWHTADLSSASTEAFFRKQRLQPQSADLLPRFNPIDLPKDLISPGND-PFNQTALAFTSIGPVFSYDECDAIVNEAEQAWAKNATSDFTFP-LNREVHARDLPWTCAWLAEVXXXXXXXXXXXXXXXXXXXADDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRSLAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFVSATRLHYREHA--RVFKMRGMAAREAGDFAAAACLYRLGLQINDCDPELWT 1115
            M+ N A H A+L +++   F R     P  +     +    + ++ +  G+  PF    L   +  PVF+  EC A+V+EA    A+ A S FT    NR+V   D+P T AWL                      A DL VY A+VI YD +A L    HQP+H D +L+S  V LS+  EY GGGTFIE LGR++A+ +G  ++H SAVRHAG+ +TAG R+VLV F++       E +   ++   G  A E G    A   Y     +N  D  L T
Sbjct:   12 MQANAAAHAAELLASADIGFRRADAAVPVVS-----YTTHSVGRNALGMGSACPFETDELVVAAAAPVFTQAECCAVVDEARSLIAEGARSRFTMTDTNRDVAVEDMPKTLAWLNNGAFARLTSLAAACYPGVVDDATDLWVYRALVINYDHSAQL---THQPIHRDHSLISCVVPLSERREYSGGGTFIEPLGRAIALEQGCALLHPSAVRHAGHRITAGERWVLVLFLNTLAREVTEESDHEIWYDLGTRAHELGVPEEALWNYERAEALNPRDSLLLT 284          
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: R1FJ91_EMIHU (Fe2OG dioxygenase domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FJ91_EMIHU)

HSP 1 Score: 121 bits (303), Expect = 9.890e-25
Identity = 87/214 (40.65%), Postives = 114/214 (53.27%), Query Frame = 3
Query:  459 LAFTSIGPVFSYDECDAIVNEAEQAWAKNATSDFTFPLNR---EVHARDLPWTCAWL-AEVXXXXXXXXXXXXXXXXXXX-----ADDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRS-LAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFVSATRLHYREHARVFKMRGMAAREAGDFAAAACLY 1070
            L   +  P+ S ++C ++V EA  A A  ++S FT+  N    EVH  DLP    WL AE+                        A++L VYDA+VI+YDAA        QP+H DAAL+S N+ALS P EY GGGT  + +G   + +GRG  +VHAS VRHAG  +TAG R+VLV F  A  +   +HAR    RG  AR AG  A A   +
Sbjct:  559 LVHATEAPLLSAEQCASLVEEAAAAMAAGSSSSFTYTRNERLGEVHVHDLPQAREWLRAELRRSLFPLLAERFGADAAAGGGGFRAEELAVYDALVIRYDAAKG---GTRQPMHRDAALLSVNIALSSPDEYEGGGTLFQTVGGGPVRLGRGHAMVHASGVRHAGAPITAGERWVLVVFALAEGVP--QHARRCAERGAEARRAGRLAEARAAF 767          
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: A0A7S4F2V1_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F2V1_CHRCT)

HSP 1 Score: 109 bits (272), Expect = 6.230e-22
Identity = 80/231 (34.63%), Postives = 117/231 (50.65%), Query Frame = 3
Query:  288 RKNEAWHTADLSSASTEAFFRKQRLQPQSADLLPRFNPIDLPKDLISPGNDPFNQTALAFTSIGPVFSYDECDAIVNEAE----QAWAKNATSDFTFPLNREVHARDLPWTCAWLAEVXXXXXXXXXXXXXXXXXXXADDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRSLAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFV 968
            R N A+  A  + A+ +A   +  L+P SA  L  +  +      + PG       AL FTS  P+FS +ECDAI+ E+E    Q     +   F  P   +V  ++LP T +WL +                       LRV DA V+KY+A+   G       H D +++SFN+AL+   EY GGGT+ E LG +L + RG +  HAS V H G+ +++G+RY+LVGFV
Sbjct:  175 RHNVAYKEAVRAFAAMDA---QTVLRPFSAAELEPYGAV------LPPGEASVTPLALIFTSAFPLFSKEECDAIIAESEAVSCQMGGWTSKRHFNHPTT-DVPLQELPLTRSWLNDALLSTIYPFLGAAFAGALPNPRALRVADAFVVKYNAS---GGQTFLSPHRDGSVLSFNIALNPRSEYEGGGTWFEGLGSALPIERGHVCAHASGVLHGGHPISSGIRYILVGFV 392          
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: R1DDX7_EMIHU (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DDX7_EMIHU)

HSP 1 Score: 111 bits (278), Expect = 6.380e-22
Identity = 75/175 (42.86%), Postives = 98/175 (56.00%), Query Frame = 3
Query:  480 PVFSYDECDAIVNEAEQAWAKNATSDFTFPLNR---EVHARDLPWTCAWL-AEVXXXXXXXXXXXXXXXXXXX-----ADDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRS-LAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFVSA 974
            P+ S ++C ++V EA  A A  ++S FT+  N    EVH  DLP    WL AE+                        A++L VYDA+VI+YDAA        QP+H DAAL+S N+ALS P EY GGGT  + +G   + +GRG  +VHAS VRHAG  +TAG R+VLV F  A
Sbjct:  513 PLLSAEQCASLVEEAAAAMAAGSSSSFTYTRNERLGEVHVHDLPQAREWLRAELRRSLFPLLAERFGADAAAAGGGFRAEELAVYDALVIRYDAAKG---GTRQPMHRDAALLSVNIALSSPDEYEGGGTLFQTVGGGPVRLGRGHAMVHASGVRHAGAPITAGERWVLVVFALA 684          
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: A0A7S3SWS2_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SWS2_EMIHU)

HSP 1 Score: 91.7 bits (226), Expect = 1.070e-15
Identity = 92/270 (34.07%), Postives = 125/270 (46.30%), Query Frame = 3
Query:  186 QCYSGGTGRISAPKKVAHTDFEPPPDEHILLEEMRKNEAWHTADLSSASTEAFFRKQRLQPQSADLLPRFNPIDLPKDLISPGNDPFNQTALAF-TSIGPVFSYDECDAIVNEAEQAWAKNATSDFTF----PLNREVHARDLPWTCAWLAEVXXXXXXXXXXXXXXXXXXXADDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRSLAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFVSATR 980
            +C S  TG       V+  D+  P   HIL E     EA H A+++S +  AF    R      ++   F+   +    + P +      A +   S   V +  EC A+  EA  A AK  +S FT+    P+ REVH  DLP     L                         LRV DA+V++YDAA     A  QP H D  LVSFNV LS    + GGGT  E  G  L   +G ++ HAS +RHAG+A++ GVR+VLV F+ +TR
Sbjct:   30 RCSSSSTG-------VSSLDYGAPAT-HILAEA----EAAHAAEVASGTAAAFL-SHRTASSRREVA--FSSHHVGARFVGPDSAALGDGASSVHISDEAVLAPAECAALRLEARLAMAKGLSSQFTYTDVAPI-REVHVADLPLARRMLRR---KLARLLLPLVAGRFALPPGSLRVRDAVVLRYDAAER---ATRQPFHRDEGLVSFNVPLSRG--FEGGGTCFEGSGAVLRPPQGRLLCHASGMRHAGHAISRGVRWVLVVFLVSTR 275          
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: A0A7S3SWI7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SWI7_EMIHU)

HSP 1 Score: 91.7 bits (226), Expect = 1.180e-15
Identity = 92/270 (34.07%), Postives = 125/270 (46.30%), Query Frame = 3
Query:  186 QCYSGGTGRISAPKKVAHTDFEPPPDEHILLEEMRKNEAWHTADLSSASTEAFFRKQRLQPQSADLLPRFNPIDLPKDLISPGNDPFNQTALAF-TSIGPVFSYDECDAIVNEAEQAWAKNATSDFTF----PLNREVHARDLPWTCAWLAEVXXXXXXXXXXXXXXXXXXXADDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRSLAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFVSATR 980
            +C S  TG       V+  D+  P   HIL E     EA H A+++S +  AF    R      ++   F+   +    + P +      A +   S   V +  EC A+  EA  A AK  +S FT+    P+ REVH  DLP     L                         LRV DA+V++YDAA     A  QP H D  LVSFNV LS    + GGGT  E  G  L   +G ++ HAS +RHAG+A++ GVR+VLV F+ +TR
Sbjct:   30 RCSSSSTG-------VSSLDYGAPAT-HILAEA----EAAHAAEVASGTAAAFL-SHRTASSRREVA--FSSHHVGARFVGPDSAALGDGASSVHISDEAVLAPAECAALRLEARLAMAKGLSSQFTYTDVAPI-REVHVADLPLARRMLRR---KLARLLLPLVAGRFALPPGSLRVRDAVVLRYDAAER---ATRQPFHRDEGLVSFNVPLSRG--FEGGGTCFEGSGAVLRPPQGRLLCHASGMRHAGHAISRGVRWVLVVFLVSTR 275          
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: A0A813LSJ2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LSJ2_POLGL)

HSP 1 Score: 89.7 bits (221), Expect = 6.720e-15
Identity = 70/199 (35.18%), Postives = 97/199 (48.74%), Query Frame = 3
Query:  483 VFSYDECDAIVNEAEQA--WAKN---ATSDFTFPLNREVHARDLPWTCAWLAEVXXXXXXXXXXXXXXXXXXX-ADDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRSLAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFVSATRLHYREHARVFKMRGMAAREAGDFAAAA 1061
            + S +EC AI+ EAE    W K+   A+ D    +   V    LP T +WL+ V                    A +LR+Y A V++YDA  A G     PVH D + ++  V L+DPGEY GGGT+IEAL  +L   +G  + H+  V H+G  V  G RY L  F  + R  + +H R F+ R  +   AG    AA
Sbjct:  185 LLSQEECSAIIAEAEAVNDWGKSFSHASKDQEASMPDRVKVDSLPSTLSWLSGVLARRVCPAVESAFPEFSQARAHNLRLYQASVLRYDAETAAGPVG-TPVHQDFSFLTLTVPLNDPGEYQGGGTWIEALQCALRPAQGHCLAHSGPVWHSGEVVQGGRRYALALFFHSAR--HIDHGRKFEERATSLIAAGKLQEAA 380          
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: A0A1Z5JMG5_FISSO (Lysyl hydroxylase/galactosyltransferase/ glucosyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMG5_FISSO)

HSP 1 Score: 85.1 bits (209), Expect = 1.360e-14
Identity = 59/167 (35.33%), Postives = 81/167 (48.50%), Query Frame = 3
Query:  480 PVFSYDECDAIVNEAEQA-----WAKNATSDFTFPLNREVHARDLPWTCAWLAEVXXXXXXXXXXXXXXXXXXXADDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRSLAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGF 965
            P+FS  EC  IV EAE       W +    +F      ++   +LP T   L E                       LR+ D  V+KYDA+       H+    D A+VSFN+AL+   +YVGGGT+ EAL   + + +G +V HAS + H G A+TAG RY+LV F
Sbjct:   93 PLFSDAECHTIVQEAEAVARQRDWTRTRHGNFP---TTDLPLTELPQTLHLLKEAWVERLQPLLADQFRHVLPDPSRLRIADGFVVKYDASEQRELKPHR----DGAVVSFNIALNPSSDYVGGGTWFEALDAPIVLPQGHVVSHASGLLHGGQAITAGRRYILVAF 252          
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: A0A7S0LCL6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LCL6_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 1.880e-14
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  690 DDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRSLAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFV 968
            ++L V+DA+V+ Y AAA    A   P H D+ALV+ N+ALSD  EY GGG  IEA G  + + RG    HAS VRHAGY +TAGVR+VLV F+
Sbjct:  178 EELVVFDALVVGYHAAAN---ATQMPAHRDSALVTINIALSDSAEYTGGGLAIEASGEVVRLPRGHAACHASGVRHAGYPITAGVRWVLVIFL 267          
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Match: B8C881_THAPS (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C881_THAPS)

HSP 1 Score: 84.3 bits (207), Expect = 2.910e-14
Identity = 55/182 (30.22%), Postives = 93/182 (51.10%), Query Frame = 3
Query:  441 PFNQTALAFTSIGPVFSYDECDAIVNEAEQ-----AWAKNATSDFTFPLNREVHARDLPWTCAWL-AEVXXXXXXXXXXXXXXXXXXXADDLRVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFIEALGRSLAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFV 968
            PF    +   + GPVF+ +EC+ I++EAEQ      W +N   ++      ++   +LP T  +    +                      LRV D  V+KYDA    G  A    H D +++SFN+AL+   E+ GGGT+ ++L  ++ + +G +V H+S++ H G+ +T+G RY++V FV
Sbjct:   94 PFQDGHMVHKTTGPVFTREECNMIIDEAEQKAYEMGWTQNRHGNYP---TTDLPIVELPQTLDFFRVALVERIYPLLRQQFGMYLPDGGKSLRVADGFVVKYDAE---GGQAELKPHRDGSVLSFNIALNPADEFDGGGTWFQSLDGAVKIDQGEVVSHSSSLLHGGHGITSGKRYIMVCFV 269          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig522.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0M0J3B6_9EUKA8.530e-2835.23Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
R1FJ91_EMIHU9.890e-2540.65Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S4F2V1_CHRCT6.230e-2234.63Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
R1DDX7_EMIHU6.380e-2242.86Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A7S3SWS2_EMIHU1.070e-1534.07Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3SWI7_EMIHU1.180e-1534.07Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A813LSJ2_POLGL6.720e-1535.18Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A1Z5JMG5_FISSO1.360e-1435.33Lysyl hydroxylase/galactosyltransferase/ glucosylt... [more]
A0A7S0LCL6_9EUKA1.880e-1453.76Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
B8C881_THAPS2.910e-1430.22Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig522contigP-wetherbeei_contig522:1195..3108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD35621
Model size1914
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.92e-26
EggNOG OGs2E3JV@1|root,2SAMK@2759|Eukaryota
Cds size1587
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.87032-UTR-P-wetherbeei_contig522:1194..12921683186782.87032-UTR-P-wetherbeei_contig522:1194..1292Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig522 1195..1292 +
1683186782.8990076-UTR-P-wetherbeei_contig522:2879..31081683186782.8990076-UTR-P-wetherbeei_contig522:2879..3108Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig522 2880..3108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186782.8844085-CDS-P-wetherbeei_contig522:1292..28791683186782.8844085-CDS-P-wetherbeei_contig522:1292..2879Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig522 1293..2879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig522.2.1prot_P-wetherbeei_contig522.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig522 1293..2879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig522.2.1

>prot_P-wetherbeei_contig522.2.1 ID=prot_P-wetherbeei_contig522.2.1|Name=mRNA_P-wetherbeei_contig522.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=529bp
MAFLISTLIGSVLGPCVAFVVVPPPRALLQCYSGGTGRISAPKKVAHTDF
EPPPDEHILLEEMRKNEAWHTADLSSASTEAFFRKQRLQPQSADLLPRFN
PIDLPKDLISPGNDPFNQTALAFTSIGPVFSYDECDAIVNEAEQAWAKNA
TSDFTFPLNREVHARDLPWTCAWLAEVLADTLLPALASAFPAAVPAADDL
RVYDAIVIKYDAAAALGAAAHQPVHADAALVSFNVALSDPGEYVGGGTFI
EALGRSLAVGRGGIVVHASAVRHAGYAVTAGVRYVLVGFVSATRLHYREH
ARVFKMRGMAAREAGDFAAAACLYRLGLQINDCDPELWTCLGVAAGRAGD
VAEALRSLRRSVVLNPRDPGTWNSLGAAILAAEDVEGSLGVAVAEAAAAS
TEEIKESTAATGKAEAMAAEEPAQALACFQRAMALGGRDAAPFLNAGLLL
ARADDFGAAATALREGLALAPEHPDMRRLLDFTEQQMAAAAGKKDREEEQ
QRQQELAMASASGARPQGMSRPFFPDSR*
back to top

mRNA from alignment at P-wetherbeei_contig522:1195..3108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig522.2.1 ID=mRNA_P-wetherbeei_contig522.2.1|Name=mRNA_P-wetherbeei_contig522.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1914bp|location=Sequence derived from alignment at P-wetherbeei_contig522:1195..3108+ (Phaeothamnion wetherbeei SAG_119_79)
AGAATAATTATGCGGACGAGAAGCCCGGGCTCCGTGATTACTGGCTGCGT GACCTTGACGCCATCGCACTCGTCGCCAAAGCCGCCATCGTCGCAAAAAT GGCCTTCCTTATTTCGACTTTGATCGGGAGCGTTCTAGGTCCATGCGTCG CGTTTGTCGTGGTTCCGCCTCCGAGGGCCCTGCTGCAATGCTACAGTGGA GGCACCGGCCGCATTAGCGCCCCGAAAAAGGTTGCCCACACAGATTTCGA GCCTCCGCCTGACGAACACATTTTGCTGGAGGAGATGCGCAAGAATGAAG CCTGGCATACTGCAGATTTGAGCTCAGCCAGCACCGAGGCCTTCTTCCGG AAACAAAGGCTACAACCTCAAAGTGCAGATTTGCTGCCACGCTTTAATCC CATTGATCTGCCCAAGGACTTGATAAGTCCAGGAAATGATCCTTTCAATC AAACGGCGCTGGCCTTCACGTCTATCGGTCCAGTCTTTTCTTATGATGAA TGCGACGCCATCGTCAACGAAGCCGAACAGGCGTGGGCCAAAAACGCGAC AAGCGACTTCACGTTTCCTCTGAACCGCGAGGTTCATGCAAGGGACCTCC CCTGGACGTGCGCCTGGCTTGCAGAGGTGCTCGCGGACACGCTCTTGCCC GCGCTGGCAAGCGCCTTCCCGGCCGCCGTACCCGCCGCCGACGACCTGCG CGTCTACGATGCCATCGTCATCAAGTACGATGCCGCCGCCGCGCTCGGCG CCGCCGCACACCAGCCCGTGCACGCCGACGCCGCCCTCGTCTCCTTCAAC GTCGCCCTCAGCGACCCCGGCGAGTACGTCGGCGGCGGAACCTTTATCGA GGCGCTGGGCCGGTCGCTTGCAGTTGGCCGCGGCGGCATCGTCGTCCACG CGAGCGCTGTGCGCCACGCCGGCTACGCCGTCACCGCCGGCGTCCGTTAC GTCCTCGTCGGGTTCGTCTCGGCGACCCGGCTGCACTACCGGGAGCACGC CCGCGTTTTCAAGATGCGCGGCATGGCCGCCCGCGAGGCCGGCGACTTTG CCGCCGCCGCTTGCCTCTACCGCTTGGGCCTCCAGATAAACGACTGTGAC CCGGAGCTGTGGACGTGTCTCGGCGTCGCCGCGGGTCGCGCTGGCGATGT GGCGGAGGCGCTGCGGTCCCTCCGACGGAGCGTAGTTCTGAATCCTAGGG ATCCGGGCACCTGGAATAGCCTCGGGGCGGCAATTCTGGCGGCAGAAGAC GTAGAAGGATCGCTGGGGGTGGCGGTAGCGGAGGCGGCGGCGGCATCGAC GGAAGAGATAAAAGAATCGACGGCAGCGACGGGGAAAGCGGAGGCGATGG CTGCGGAGGAGCCGGCCCAGGCGCTCGCTTGCTTCCAGCGGGCGATGGCG CTGGGCGGGAGGGACGCCGCGCCGTTCCTCAACGCCGGACTGCTGCTGGC GCGGGCTGACGATTTTGGGGCAGCCGCGACAGCGCTGCGGGAGGGGCTGG CGCTCGCGCCGGAGCATCCCGACATGCGCCGCCTGCTGGACTTCACCGAG CAACAAATGGCGGCGGCGGCGGGGAAGAAGGATAGGGAGGAGGAGCAGCA GCGGCAGCAGGAATTGGCGATGGCGAGCGCCAGTGGCGCAAGACCACAGG GAATGAGCCGCCCTTTCTTTCCGGATTCGAGGTGAGGGCAACGGCGGCGG TCGAAAGGTGGTGTTACATAAAGTGGCGGCGCTCAGCGGTAGGTCTTTCG GCTGCTGTGCTGTCGTGAATGTTGTTTGAATGAAAGATCTACGTGCTTAG CGACTCCATAGATGTTAGTTAGGTAGGTAGATGTTGATGGTAGCTTCTTG GCGACTGAGGCCTGAGGCTGGTCTCGGTTCTTCATGTACATACATTTTGT AGATTCTGCAAATC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig522:1195..3108+

>mRNA_P-wetherbeei_contig522.2.1 ID=mRNA_P-wetherbeei_contig522.2.1|Name=mRNA_P-wetherbeei_contig522.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1587bp|location=Sequence derived from alignment at P-wetherbeei_contig522:1195..3108+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTTCCTTATTTCGACTTTGATCGGGAGCGTTCTAGGTCCATGCGT
CGCGTTTGTCGTGGTTCCGCCTCCGAGGGCCCTGCTGCAATGCTACAGTG
GAGGCACCGGCCGCATTAGCGCCCCGAAAAAGGTTGCCCACACAGATTTC
GAGCCTCCGCCTGACGAACACATTTTGCTGGAGGAGATGCGCAAGAATGA
AGCCTGGCATACTGCAGATTTGAGCTCAGCCAGCACCGAGGCCTTCTTCC
GGAAACAAAGGCTACAACCTCAAAGTGCAGATTTGCTGCCACGCTTTAAT
CCCATTGATCTGCCCAAGGACTTGATAAGTCCAGGAAATGATCCTTTCAA
TCAAACGGCGCTGGCCTTCACGTCTATCGGTCCAGTCTTTTCTTATGATG
AATGCGACGCCATCGTCAACGAAGCCGAACAGGCGTGGGCCAAAAACGCG
ACAAGCGACTTCACGTTTCCTCTGAACCGCGAGGTTCATGCAAGGGACCT
CCCCTGGACGTGCGCCTGGCTTGCAGAGGTGCTCGCGGACACGCTCTTGC
CCGCGCTGGCAAGCGCCTTCCCGGCCGCCGTACCCGCCGCCGACGACCTG
CGCGTCTACGATGCCATCGTCATCAAGTACGATGCCGCCGCCGCGCTCGG
CGCCGCCGCACACCAGCCCGTGCACGCCGACGCCGCCCTCGTCTCCTTCA
ACGTCGCCCTCAGCGACCCCGGCGAGTACGTCGGCGGCGGAACCTTTATC
GAGGCGCTGGGCCGGTCGCTTGCAGTTGGCCGCGGCGGCATCGTCGTCCA
CGCGAGCGCTGTGCGCCACGCCGGCTACGCCGTCACCGCCGGCGTCCGTT
ACGTCCTCGTCGGGTTCGTCTCGGCGACCCGGCTGCACTACCGGGAGCAC
GCCCGCGTTTTCAAGATGCGCGGCATGGCCGCCCGCGAGGCCGGCGACTT
TGCCGCCGCCGCTTGCCTCTACCGCTTGGGCCTCCAGATAAACGACTGTG
ACCCGGAGCTGTGGACGTGTCTCGGCGTCGCCGCGGGTCGCGCTGGCGAT
GTGGCGGAGGCGCTGCGGTCCCTCCGACGGAGCGTAGTTCTGAATCCTAG
GGATCCGGGCACCTGGAATAGCCTCGGGGCGGCAATTCTGGCGGCAGAAG
ACGTAGAAGGATCGCTGGGGGTGGCGGTAGCGGAGGCGGCGGCGGCATCG
ACGGAAGAGATAAAAGAATCGACGGCAGCGACGGGGAAAGCGGAGGCGAT
GGCTGCGGAGGAGCCGGCCCAGGCGCTCGCTTGCTTCCAGCGGGCGATGG
CGCTGGGCGGGAGGGACGCCGCGCCGTTCCTCAACGCCGGACTGCTGCTG
GCGCGGGCTGACGATTTTGGGGCAGCCGCGACAGCGCTGCGGGAGGGGCT
GGCGCTCGCGCCGGAGCATCCCGACATGCGCCGCCTGCTGGACTTCACCG
AGCAACAAATGGCGGCGGCGGCGGGGAAGAAGGATAGGGAGGAGGAGCAG
CAGCGGCAGCAGGAATTGGCGATGGCGAGCGCCAGTGGCGCAAGACCACA
GGGAATGAGCCGCCCTTTCTTTCCGGATTCGAGGTGA
back to top