mRNA_P-wetherbeei_contig51780.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51780.1.1
Unique NamemRNA_P-wetherbeei_contig51780.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: A0A7V9N6X8_9CHLR (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9N6X8_9CHLR)

HSP 1 Score: 177 bits (449), Expect = 5.290e-52
Identity = 85/141 (60.28%), Postives = 109/141 (77.30%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYGAAYMQSMTDVRKI 423
            VGVVGCG+IAQIMHLP+L +LPQFR+ AVCDLS  VVEAVG+R+GV  R  D  +L+++DD+D VAVLT++H  VA AA  +GKH+F+EKP+ F++ EA  +     R GV  M+GYMK +DPG+EYGAA MQ+M DVR I
Sbjct:    6 VGVVGCGQIAQIMHLPYLTELPQFRVTAVCDLSTAVVEAVGERFGVPVRCRDYADLVSRDDVDAVAVLTIEHAGVAVAAAAAGKHLFIEKPIGFSLAEADRIIAAVARAGVTAMIGYMKRYDPGYEYGAARMQAMDDVRLI 146          
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: A0A7W9FLL5_9HYPH (Putative dehydrogenase n=1 Tax=Prosthecomicrobium pneumaticum TaxID=81895 RepID=A0A7W9FLL5_9HYPH)

HSP 1 Score: 166 bits (419), Expect = 1.550e-47
Identity = 77/130 (59.23%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYGAA 390
            VGV+GCGEIAQ+MHLP+L +LP+FRI A+CD+SPT+VE +GD YGVA R TD  ELLA   +D V + T DH  + +  I +GKH  VEKPL F  +EA  L ERA   G++ MVGYMK FDPG+EYG A
Sbjct:    8 VGVIGCGEIAQLMHLPYLHELPEFRIAALCDISPTLVETLGDHYGVARRTTDHRELLADPKVDAVVICTYDHGPIVADTIAAGKHFIVEKPLAFTPEEARPLVERAREAGLVAMVGYMKLFDPGYEYGRA 137          
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: M5F415_9HYPH (Oxidoreductase domain protein n=25 Tax=Phyllobacteriaceae TaxID=69277 RepID=M5F415_9HYPH)

HSP 1 Score: 160 bits (406), Expect = 1.260e-45
Identity = 74/128 (57.81%), Postives = 95/128 (74.22%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYG 384
            VGV+GCGEIAQ+MHLP+L +LP FRI A+CD+SP  V+ VG+ YGVA RYTD   LLA  D+D V + T DH  + + AI +GKH+ VEKPL F  +EA  L E+AER G++ +VGYMK +DPG+E G
Sbjct:    8 VGVIGCGEIAQLMHLPYLQELPAFRIAALCDISPGTVDKVGEHYGVAARYTDHRALLADPDVDAVVICTYDHGEMVADAIRAGKHLIVEKPLAFTPEEARPLVEQAERSGLVALVGYMKFYDPGYEIG 135          
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: A0A527IF32_9HYPH (Gfo/Idh/MocA family oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A527IF32_9HYPH)

HSP 1 Score: 157 bits (397), Expect = 1.590e-45
Identity = 72/128 (56.25%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYG 384
            VGV+GCGEIAQ+MHLP+L++LP FRI A+CD+SP  V+ V + YGV  RYTD   LLA  ++D V + T DH  + + AI +GKH+ VEKPL F  QEA  L E+AER G++ +VGYMK +DPG+E G
Sbjct:    8 VGVIGCGEIAQLMHLPYLMELPAFRIAALCDISPGTVDKVAEHYGVTARYTDHRALLADPNVDAVVICTYDHGEMVADAIRAGKHLIVEKPLAFTPQEARPLVEQAERSGLVALVGYMKFYDPGYETG 135          
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: F7YHJ3_MESOW (Oxidoreductase domain protein n=36 Tax=Mesorhizobium TaxID=68287 RepID=F7YHJ3_MESOW)

HSP 1 Score: 158 bits (400), Expect = 9.870e-45
Identity = 73/128 (57.03%), Postives = 95/128 (74.22%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYG 384
            VGV+GCGEIAQ+MHLP+L++LP FRI A+CD+S   V+ VG+ YGVA RYTD   LLA  ++D V + T DH  + + AI +GKH+ VEKPL F  QEA  L E+AER G++ +VGYMK +DPG+E G
Sbjct:    8 VGVIGCGEIAQLMHLPYLMELPAFRIAALCDISRGTVDKVGEHYGVAGRYTDHRALLADPNVDAVVICTYDHGEMVADAIRAGKHLIVEKPLAFTPQEARPLVEQAERSGLVALVGYMKFYDPGYETG 135          
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: A0A526ML10_9HYPH (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A526ML10_9HYPH)

HSP 1 Score: 156 bits (395), Expect = 6.720e-44
Identity = 71/128 (55.47%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYG 384
            VGV+GCGEIAQ+MHLP+L +LP FRI A+CD+SP  V+ +G+ Y VA RY+D   LLA  ++D V + T DH  + + AI +GKH+ VEKPL F  QEA  L E+AER G++ +VGYMK +DPG+E G
Sbjct:    8 VGVIGCGEIAQLMHLPYLQELPAFRIAALCDISPGTVDKIGEHYSVAARYSDHRALLADPNIDAVVICTYDHGGMVADAIRAGKHLIVEKPLAFTPQEARPLVEQAERSGLVALVGYMKFYDPGYEIG 135          
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: UPI0016823BDB (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Paenibacillus sp. IB182496 TaxID=2772509 RepID=UPI0016823BDB)

HSP 1 Score: 156 bits (394), Expect = 8.090e-44
Identity = 73/141 (51.77%), Postives = 99/141 (70.21%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYGAAYMQSMTDVRKI 423
            VGVVG G++AQIMHLP L +LPQ+ + A+CD+SP ++ A+G+RYGV  RY D  E++    LD +AVLTMDH     AA+E+G HV VEKPL F+  +   + E A R+GV LMVGYMK +DPG+ Y A  ++ M D+R +
Sbjct:    6 VGVVGVGKVAQIMHLPFLSELPQYELAALCDVSPQLLRAMGERYGVERRYLDYAEMIRAGGLDCIAVLTMDHPGPVLAALEAGIHVLVEKPLCFDPADGRRMVETARRKGVQLMVGYMKRYDPGYAYAAELIREMADMRLL 146          
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: A0A840AS10_9HYPH (Putative dehydrogenase n=1 Tax=Kaistia hirudinis TaxID=1293440 RepID=A0A840AS10_9HYPH)

HSP 1 Score: 151 bits (382), Expect = 4.730e-42
Identity = 70/141 (49.65%), Postives = 98/141 (69.50%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYGAAYMQSMTDVRKI 423
            VGV+GCGEIAQ+MHLP + +LP FR+ A+CD+SP V+  +GD+Y V+  Y+D   LLA   +D VA+ T DH  + +AA+ +GKHV VEKPL F  +EA  L E+AE  G++ +VGYMK +DPG+E G   + ++   R I
Sbjct:    8 VGVIGCGEIAQLMHLPFIQELPAFRVAALCDISPGVLAKLGDQYAVSALYSDYRALLADPAVDAVAICTYDHGEIVAAALAAGKHVLVEKPLAFTPEEARPLVEQAEASGLVALVGYMKLYDPGYETGLKKIAAIGTPRSI 148          
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: A0A7C2VR30_9CHLR (Gfo/Idh/MocA family oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2VR30_9CHLR)

HSP 1 Score: 151 bits (381), Expect = 1.050e-41
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQ-FRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYGAAYMQSMTDVRKI 423
            V V+G GEIAQIMHLP+L +L + + I A+CD+SP +V  +GD YGV +RYTD   L+AQ DLD V VLT  H+  A AA++ GKHV VEKP+  N++EA  L E A R G +LMV YMK +DPG+ YG   +Q + D+R +
Sbjct:    9 VVVIGLGEIAQIMHLPYLRELEERYEIAAICDISPQLVARIGDLYGVDHRYTDFRALVAQPDLDAVFVLTPYHFQPALAALQQGKHVLVEKPMCTNLREADTLIETAARNGCILMVAYMKRYDPGYLYGQRKIQEIPDIRLV 150          
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Match: A0A1M4XCK2_9HYPH (Predicted dehydrogenase n=1 Tax=Kaistia soli DSM 19436 TaxID=1122133 RepID=A0A1M4XCK2_9HYPH)

HSP 1 Score: 150 bits (378), Expect = 1.900e-41
Identity = 70/141 (49.65%), Postives = 97/141 (68.79%), Query Frame = 1
Query:    1 VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRYTDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAVELTERAERQGVLLMVGYMKCFDPGFEYGAAYMQSMTDVRKI 423
            VGV+GCGEIAQ+MHLP + +LP FRI A+CD+S  V+E +G +YGV   Y+D   L+A   +D V V T DH  + +AA+ +GKHVFVEKPL F  +EA  + E+AE  G++ M+GYMK +DPG+E G   + ++   R I
Sbjct:    8 VGVIGCGEIAQLMHLPFIHELPSFRIAALCDISVGVIEKLGAQYGVEALYSDYTALIADPAVDAVVVCTYDHGDIVAAALAAGKHVFVEKPLAFTPEEARPMVEKAEASGLVAMIGYMKLYDPGYEIGLEKIATIGTPRSI 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51780.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9N6X8_9CHLR5.290e-5260.28Gfo/Idh/MocA family oxidoreductase n=1 Tax=Chlorof... [more]
A0A7W9FLL5_9HYPH1.550e-4759.23Putative dehydrogenase n=1 Tax=Prosthecomicrobium ... [more]
M5F415_9HYPH1.260e-4557.81Oxidoreductase domain protein n=25 Tax=Phyllobacte... [more]
A0A527IF32_9HYPH1.590e-4556.25Gfo/Idh/MocA family oxidoreductase (Fragment) n=1 ... [more]
F7YHJ3_MESOW9.870e-4557.03Oxidoreductase domain protein n=36 Tax=Mesorhizobi... [more]
A0A526ML10_9HYPH6.720e-4455.47Gfo/Idh/MocA family oxidoreductase n=1 Tax=Mesorhi... [more]
UPI0016823BDB8.090e-4451.77Gfo/Idh/MocA family oxidoreductase n=1 Tax=Paeniba... [more]
A0A840AS10_9HYPH4.730e-4249.65Putative dehydrogenase n=1 Tax=Kaistia hirudinis T... [more]
A0A7C2VR30_9CHLR1.050e-4152.82Gfo/Idh/MocA family oxidoreductase n=1 Tax=Chlorof... [more]
A0A1M4XCK2_9HYPH1.900e-4149.65Predicted dehydrogenase n=1 Tax=Kaistia soli DSM 1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51780contigP-wetherbeei_contig51780:128..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1040983.AXAE01000001_gene2914
PFAMsGFO_IDH_MocA
Model size423
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.62e-48
EggNOG OGsCOG0673@1|root,COG0673@2|Bacteria,1QIQ6@1224|Proteobacteria,2U430@28211|Alphaproteobacteria,43R34@69277|Phyllobacteriaceae
DescriptionOxidoreductase family, NAD-binding Rossmann fold
Cds size423
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186777.0366282-CDS-P-wetherbeei_contig51780:127..5501683186777.0366282-CDS-P-wetherbeei_contig51780:127..550Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51780 128..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51780.1.1prot_P-wetherbeei_contig51780.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51780 128..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51780.1.1

>prot_P-wetherbeei_contig51780.1.1 ID=prot_P-wetherbeei_contig51780.1.1|Name=mRNA_P-wetherbeei_contig51780.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
VGVVGCGEIAQIMHLPHLLDLPQFRIGAVCDLSPTVVEAVGDRYGVANRY
TDAHELLAQDDLDIVAVLTMDHYAVASAAIESGKHVFVEKPLTFNVQEAV
ELTERAERQGVLLMVGYMKCFDPGFEYGAAYMQSMTDVRKI
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mRNA from alignment at P-wetherbeei_contig51780:128..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51780.1.1 ID=mRNA_P-wetherbeei_contig51780.1.1|Name=mRNA_P-wetherbeei_contig51780.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig51780:128..550+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGAGTCGTCGGCTGTGGAGAGATCGCGCAGATCATGCATCTGCCCCA TCTTCTCGATCTCCCGCAATTCCGCATCGGCGCCGTCTGTGATCTCTCGC CAACGGTAGTCGAAGCCGTTGGTGACCGATACGGGGTGGCGAACCGCTAC ACCGACGCCCACGAACTCCTTGCCCAGGACGATCTGGACATCGTCGCGGT GCTGACGATGGATCACTACGCCGTCGCGAGTGCCGCAATCGAATCCGGCA AGCACGTCTTCGTTGAAAAGCCGCTGACGTTCAATGTGCAGGAGGCGGTG GAACTCACCGAGCGGGCGGAGCGCCAGGGTGTTCTCCTGATGGTCGGGTA CATGAAGTGCTTCGATCCCGGCTTTGAATACGGCGCCGCATACATGCAAA GCATGACCGATGTCCGCAAAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51780:128..550+

>mRNA_P-wetherbeei_contig51780.1.1 ID=mRNA_P-wetherbeei_contig51780.1.1|Name=mRNA_P-wetherbeei_contig51780.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig51780:128..550+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGAGTCGTCGGCTGTGGAGAGATCGCGCAGATCATGCATCTGCCCCA
TCTTCTCGATCTCCCGCAATTCCGCATCGGCGCCGTCTGTGATCTCTCGC
CAACGGTAGTCGAAGCCGTTGGTGACCGATACGGGGTGGCGAACCGCTAC
ACCGACGCCCACGAACTCCTTGCCCAGGACGATCTGGACATCGTCGCGGT
GCTGACGATGGATCACTACGCCGTCGCGAGTGCCGCAATCGAATCCGGCA
AGCACGTCTTCGTTGAAAAGCCGCTGACGTTCAATGTGCAGGAGGCGGTG
GAACTCACCGAGCGGGCGGAGCGCCAGGGTGTTCTCCTGATGGTCGGGTA
CATGAAGTGCTTCGATCCCGGCTTTGAATACGGCGCCGCATACATGCAAA
GCATGACCGATGTCCGCAAAATC
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