mRNA_P-wetherbeei_contig51635.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51635.1.1
Unique NamemRNA_P-wetherbeei_contig51635.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Match: A0A838G7I6_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838G7I6_9CHLR)

HSP 1 Score: 63.9 bits (154), Expect = 1.910e-11
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1
Query:   28 RLGVAATAILLIAAVGLFAFRTLYSDRIYPAVVVGDVEVGGLT 156
            RL VA   +LL+AA+GLFAFRTLY DRIYPAVVVGDV VGGL+
Sbjct:   68 RLVVAIAFVLLLAAIGLFAFRTLYDDRIYPAVVVGDVNVGGLS 110          
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Match: A0A7W0KGP1_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KGP1_9CHLR)

HSP 1 Score: 62.8 bits (151), Expect = 1.160e-10
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   28 RLGVAATAILLIAAVGLFAFRTLYSDRIYPAVVVGDVEVGGLT 156
            RL VA    LL+AA+GLFAFRTLY DRIYPAVVVGDV VGGL+
Sbjct:   71 RLVVAVAFALLLAAIGLFAFRTLYDDRIYPAVVVGDVNVGGLS 113          
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Match: A0A7W0PQA2_9CHLR (VanW family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PQA2_9CHLR)

HSP 1 Score: 56.6 bits (135), Expect = 5.430e-8
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   37 VAATAILLIAAVGLFAFRTLYSDRIYPAVVVGDVEVGGLT 156
            + A A+LL+ AVGLF FRT Y +RIYPA VVGDV VGGLT
Sbjct:   13 IGAMAVLLLIAVGLFVFRTWYDNRIYPAAVVGDVNVGGLT 52          
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Match: A0A6J4UQ75_9CHLR (Vancomycin B-type resistance protein VanW n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UQ75_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 3.560e-7
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   52 ILLIAAVGLFAFRTLYSDRIYPAVVVGDVEVGGLT 156
            +LL+  +GLFAFR  YS+RIYPAV VGDV VGGLT
Sbjct:   90 LLLVLTIGLFAFRAFYSERIYPAVTVGDVPVGGLT 124          
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Match: A0A7V9VGJ9_9CHLR (Peptidoglycan binding domain-containing protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VGJ9_9CHLR)

HSP 1 Score: 53.9 bits (128), Expect = 4.000e-7
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 RQAGIG--LTRLGVAATAILLIAAVGLFAFRTLYSDRIYPAVVVGDVEVGGLT 156
            RQAGI   L RL +     LL+ AV LFAFR +Y+DR+YPAV VGDV VGGLT
Sbjct:   56 RQAGITRLLPRLVLMGAVGLLLFAVLLFAFRAVYADRVYPAVAVGDVPVGGLT 108          
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Match: A0A7V9AKS2_9CHLR (VanW family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9AKS2_9CHLR)

HSP 1 Score: 53.5 bits (127), Expect = 6.650e-7
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1
Query:   73 GLFAFRTLYSDRIYPAVVVGDVEVGGLT 156
            GLFAFR++YSDRIYPAV VGDV VGGLT
Sbjct:    2 GLFAFRSVYSDRIYPAVTVGDVPVGGLT 29          
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Match: A0A7W0N9K6_9CHLR (VanW family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0N9K6_9CHLR)

HSP 1 Score: 50.1 bits (118), Expect = 1.120e-5
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   49 AILLIAAVGLFAFRTLYSDRIYPAVVVGDVEVGGL 153
            A++L+ A+G+ AFR  YSDR++PAV+VGDV VGGL
Sbjct:   24 ALILLVAIGIVAFRITYSDRVFPAVMVGDVAVGGL 58          
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Match: A0A6J4U4A7_9CHLR (Vancomycin B-type resistance protein VanW n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4U4A7_9CHLR)

HSP 1 Score: 47.8 bits (112), Expect = 7.330e-5
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   49 AILLIAAVGLFAFRTLYSDRIYPAVVVGDVEVGGL 153
            A+LLIA   L AFR  Y+D++YPAV VGDV VGGL
Sbjct:    3 ALLLIATAALLAFRGAYADKVYPAVAVGDVPVGGL 37          
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Match: A0A7W0PMN9_9CHLR (VanW family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PMN9_9CHLR)

HSP 1 Score: 47.8 bits (112), Expect = 7.340e-5
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   55 LLIAAVGLFAFRTLYSDRIYPAVVVGDVEVGGLT 156
            +L+ A+GL  FR  Y+ RIYPAV VGDV VGGLT
Sbjct:   83 ILLVAIGLLIFRVQYNGRIYPAVAVGDVNVGGLT 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51635.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A838G7I6_9CHLR1.910e-1176.74Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A7W0KGP1_9CHLR1.160e-1076.74Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A7W0PQA2_9CHLR5.430e-870.00VanW family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A6J4UQ75_9CHLR3.560e-771.43Vancomycin B-type resistance protein VanW n=1 Tax=... [more]
A0A7V9VGJ9_9CHLR4.000e-762.26Peptidoglycan binding domain-containing protein (F... [more]
A0A7V9AKS2_9CHLR6.650e-785.71VanW family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A7W0N9K6_9CHLR1.120e-562.86VanW family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A6J4U4A7_9CHLR7.330e-565.71Vancomycin B-type resistance protein VanW n=1 Tax=... [more]
A0A7W0PMN9_9CHLR7.340e-564.71VanW family protein n=1 Tax=Chloroflexia bacterium... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51635contigP-wetherbeei_contig51635:10..165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size156
Hectar predicted targeting categorysignal peptide
Exons1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186775.3998184-CDS-P-wetherbeei_contig51635:9..1651683186775.3998184-CDS-P-wetherbeei_contig51635:9..165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51635 10..165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51635.1.1prot_P-wetherbeei_contig51635.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51635 10..165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51635.1.1

>prot_P-wetherbeei_contig51635.1.1 ID=prot_P-wetherbeei_contig51635.1.1|Name=mRNA_P-wetherbeei_contig51635.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
MRQAGIGLTRLGVAATAILLIAAVGLFAFRTLYSDRIYPAVVVGDVEVGG
LT
back to top

mRNA from alignment at P-wetherbeei_contig51635:10..165-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51635.1.1 ID=mRNA_P-wetherbeei_contig51635.1.1|Name=mRNA_P-wetherbeei_contig51635.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig51635:10..165- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCAGGCCGGGATCGGGCTGACCCGCCTTGGCGTCGCCGCGACCGC GATCCTCCTCATCGCCGCTGTCGGCCTCTTTGCCTTCCGCACGCTTTACA GCGATCGCATCTACCCCGCCGTCGTCGTCGGCGATGTCGAGGTGGGCGGC CTCACC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig51635:10..165-

>mRNA_P-wetherbeei_contig51635.1.1 ID=mRNA_P-wetherbeei_contig51635.1.1|Name=mRNA_P-wetherbeei_contig51635.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig51635:10..165- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCAGGCCGGGATCGGGCTGACCCGCCTTGGCGTCGCCGCGACCGC
GATCCTCCTCATCGCCGCTGTCGGCCTCTTTGCCTTCCGCACGCTTTACA
GCGATCGCATCTACCCCGCCGTCGTCGTCGGCGATGTCGAGGTGGGCGGC
CTCACC
back to top