mRNA_P-wetherbeei_contig1217.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1217.3.1
Unique NamemRNA_P-wetherbeei_contig1217.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: A0A7S2STG4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STG4_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.780e-65
Identity = 108/135 (80.00%), Postives = 118/135 (87.41%), Query Frame = 1
Query:    1 AKEAAKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            A++AAK ++KG+G +  K RTKVHFYKPKTLKLARKPKY  KA   L KMDK+R IKYPLTTESAMKKIEDNNTLVFIVDV ANKRQIKDAV  M+DI  QKVNTLIRPDGQKKAYVRLTQDYDAL++ANRIGII
Sbjct:   22 AEDAAKQIKKGAGSREVKKRTKVHFYKPKTLKLARKPKYNSKATVGLQKMDKHRIIKYPLTTESAMKKIEDNNTLVFIVDVTANKRQIKDAVSQMHDIQCQKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 156          
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: A0A6U1J6R7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1J6R7_9STRA)

HSP 1 Score: 200 bits (508), Expect = 7.470e-64
Identity = 105/132 (79.55%), Postives = 116/132 (87.88%), Query Frame = 1
Query:   10 AAKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            AA  +R G+GKK+ K RTKVHFY+PK+ +  + PKYA KAAPA +KMDKYR IKYPLTTESAMKKIEDNNTLVFIVDV ANKRQIKDAVKAMY+I   KVNTLIRPDGQKKAYVRLTQDYDAL++ANRIGII
Sbjct:    9 AATAVRSGTGKKMVKRRTKVHFYRPKSFQPPKAPKYALKAAPARAKMDKYRVIKYPLTTESAMKKIEDNNTLVFIVDVAANKRQIKDAVKAMYEISCSKVNTLIRPDGQKKAYVRLTQDYDALDVANRIGII 140          
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: A0A835Z6Z2_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z2_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.380e-63
Identity = 107/135 (79.26%), Postives = 118/135 (87.41%), Query Frame = 1
Query:    1 AKEAAKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            AK AAK + KG+G K TKVRTKVHFY+PKTL   RKPKYA K+ P+  KMDK+R IKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIK AV+A+Y+I  QKVNTLIRPDG KKAYVRLTQDYDALE+AN+IGII
Sbjct:   14 AKAAAKAVTKGTGIKKTKVRTKVHFYRPKTLTHDRKPKYALKSTPSQPKMDKFRIIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKAAVRALYEISCQKVNTLIRPDGLKKAYVRLTQDYDALEVANKIGII 148          
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: K3WU46_GLOUD (Ribosomal_L23eN domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WU46_GLOUD)

HSP 1 Score: 198 bits (503), Expect = 5.970e-63
Identity = 104/131 (79.39%), Postives = 115/131 (87.79%), Query Frame = 1
Query:   13 AKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            +K L KGS  KV KVRTKVHFYKPKTLKLAR PKYARKA P  +K+DKYR IK PLTTESAMKKIEDNNTLVF+VD+ ANKRQIKDAVK +Y+I + KVNTLIRPDGQKKAYVRLT DYDAL++ANRIG+I
Sbjct:   20 SKKLTKGSHGKVIKVRTKVHFYKPKTLKLARAPKYARKAVPTRTKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDILANKRQIKDAVKQLYEIKAAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 150          
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: A0A2D4BQZ7_PYTIN (60S ribosomal protein L23a putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQZ7_PYTIN)

HSP 1 Score: 197 bits (500), Expect = 1.600e-62
Identity = 103/135 (76.30%), Postives = 116/135 (85.93%), Query Frame = 1
Query:    1 AKEAAKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            A + +K + KGS  K  +VRTKVHFYKPKTLKLAR PKYARKA P  +KMDKYR IK PLTTESAMKKIEDNNTLVF+VD+ ANKRQIKDA+K +YDI + KVNTLIRPDGQKKAYVRLT DYDAL++ANRIG+I
Sbjct:   14 AAKVSKKVLKGSHGKAVQVRTKVHFYKPKTLKLARAPKYARKAVPTRNKMDKYRIIKSPLTTESAMKKIEDNNTLVFLVDILANKRQIKDAIKQLYDIKAAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 148          
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: A0A6H5L594_9PHAE (Ribosomal_L23eN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L594_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 5.720e-62
Identity = 104/135 (77.04%), Postives = 118/135 (87.41%), Query Frame = 1
Query:    1 AKEAAKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            AK AAK + KGSGK+  KVRT VHF++PKTL  ARKPKY  KA P   +M+K+R IK+PLTTESAMKKIEDNNTLVFIVDVK+NKRQIKDAVKA+YDI SQ VNTLIRPDG+KKAYVRLTQD+DALE+AN+IGII
Sbjct:   10 AKLAAKNVLKGSGKRRAKVRTSVHFHRPKTLTHARKPKYPAKAVPRSPQMNKHRIIKFPLTTESAMKKIEDNNTLVFIVDVKSNKRQIKDAVKALYDIESQNVNTLIRPDGKKKAYVRLTQDFDALEVANKIGII 144          
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: A0A812S0Y6_SYMMI (RPL23A protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S0Y6_SYMMI)

HSP 1 Score: 194 bits (494), Expect = 8.900e-62
Identity = 102/135 (75.56%), Postives = 114/135 (84.44%), Query Frame = 1
Query:    1 AKEAAKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            AK+ A  L+KGSG+K T+V TKVHFYKP TLKLAR PK  RK+  ++ KMD Y  IKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKD+V  +Y I + KVNTLIRPDGQKKAYVRLTQDYDAL++ANRI II
Sbjct:    2 AKKTAGALKKGSGRKATRVHTKVHFYKPSTLKLARAPKVTRKSVKSMPKMDAYSVIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDSVNKLYAITAAKVNTLIRPDGQKKAYVRLTQDYDALDVANRISII 136          
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: A0A8K1FMI1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMI1_PYTOL)

HSP 1 Score: 192 bits (489), Expect = 7.580e-61
Identity = 105/137 (76.64%), Postives = 117/137 (85.40%), Query Frame = 1
Query:    4 KEAAKTLRK---GSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            K AAK  RK   GS  KV +VR KVHFYKP TLKLAR PKYARK+AP+ +K+DKYR IK PLTTESAMKKIEDNNTLVF+VD+ ANKRQIKDAVK +YDI + KVNTLIRPDGQKKAYVRLT DYDAL++ANRIG+I
Sbjct:   12 KAAAKVSRKVLKGSHGKVVQVRNKVHFYKPTTLKLARAPKYARKSAPSRNKLDKYRIIKAPLTTESAMKKIEDNNTLVFLVDLLANKRQIKDAVKQLYDIKAAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 148          
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: A0A484E3G8_BRELC (Ribosomal_L23eN domain-containing protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A484E3G8_BRELC)

HSP 1 Score: 192 bits (488), Expect = 1.150e-60
Identity = 101/135 (74.81%), Postives = 116/135 (85.93%), Query Frame = 1
Query:    1 AKEAAKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            A + +K + KGS  KV K+RTKVHFYKPKTL+LAR P+YARKA P+ +K+DKYR IK PLTTESAMKKIED NTLVF+VD+ ANKRQIKDAVK +YDI   KVNTLIRPDGQKKAYVRLT DYDAL++ANRIG+I
Sbjct:   16 AAKLSKKVMKGSHGKVLKIRTKVHFYKPKTLRLARAPRYARKAVPSRNKLDKYRIIKSPLTTESAMKKIEDTNTLVFLVDLLANKRQIKDAVKQLYDIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 150          
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Match: A0A3F2RWD3_9STRA (Ribosomal_L23eN domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWD3_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.530e-60
Identity = 101/135 (74.81%), Postives = 117/135 (86.67%), Query Frame = 1
Query:    1 AKEAAKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKMDKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVSQKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII 405
            A + +K + KG+  KV K+RTKVHFYKPKTL+LAR P+YARKA P+ +KMDKYR IK PLTTESAMKKIEDNNTLVF+VD+ +NKRQIKDAVK +YDI   KVNTLIRPDGQKKAYVRLT DYDAL++ANRIG+I
Sbjct:   14 AAKISKKVIKGAHGKVLKIRTKVHFYKPKTLQLARAPRYARKAMPSRNKMDKYRIIKSPLTTESAMKKIEDNNTLVFLVDLLSNKRQIKDAVKQLYDIKVAKVNTLIRPDGQKKAYVRLTADYDALDVANRIGVI 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1217.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2STG4_9STRA3.780e-6580.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U1J6R7_9STRA7.470e-6479.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835Z6Z2_9STRA1.380e-6379.26Ribosomal protein L23/L15e core domain-containing ... [more]
K3WU46_GLOUD5.970e-6379.39Ribosomal_L23eN domain-containing protein n=2 Tax=... [more]
A0A2D4BQZ7_PYTIN1.600e-6276.3060S ribosomal protein L23a putative n=1 Tax=Pythiu... [more]
A0A6H5L594_9PHAE5.720e-6277.04Ribosomal_L23eN domain-containing protein n=2 Tax=... [more]
A0A812S0Y6_SYMMI8.900e-6275.56RPL23A protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A8K1FMI1_PYTOL7.580e-6176.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484E3G8_BRELC1.150e-6074.81Ribosomal_L23eN domain-containing protein n=24 Tax... [more]
A0A3F2RWD3_9STRA1.530e-6074.81Ribosomal_L23eN domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1217contigP-wetherbeei_contig1217:4224..5473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog36331.EPrPI00000017202
PFAMsRibosomal_L23,Ribosomal_L23eN
Model size408
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.42e-64
EggNOG OGsCOG0089@1|root,KOG1751@2759|Eukaryota,1MGUH@121069|Pythiales
Description60S ribosomal protein L23a. Source PGD
Cds size408
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185940.1525776-CDS-P-wetherbeei_contig1217:4223..43251683185940.1525776-CDS-P-wetherbeei_contig1217:4223..4325Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1217 4224..4325 -
1683185940.169317-CDS-P-wetherbeei_contig1217:4614..46741683185940.169317-CDS-P-wetherbeei_contig1217:4614..4674Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1217 4615..4674 -
1683185940.1818373-CDS-P-wetherbeei_contig1217:5012..51201683185940.1818373-CDS-P-wetherbeei_contig1217:5012..5120Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1217 5013..5120 -
1683185940.1951334-CDS-P-wetherbeei_contig1217:5335..54731683185940.1951334-CDS-P-wetherbeei_contig1217:5335..5473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1217 5336..5473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1217.3.1prot_P-wetherbeei_contig1217.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1217 4224..5473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1217.3.1

>prot_P-wetherbeei_contig1217.3.1 ID=prot_P-wetherbeei_contig1217.3.1|Name=mRNA_P-wetherbeei_contig1217.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
AKEAAKTLRKGSGKKVTKVRTKVHFYKPKTLKLARKPKYARKAAPALSKM
DKYRTIKYPLTTESAMKKIEDNNTLVFIVDVKANKRQIKDAVKAMYDIVS
QKVNTLIRPDGQKKAYVRLTQDYDALEIANRIGII*
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mRNA from alignment at P-wetherbeei_contig1217:4224..5473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1217.3.1 ID=mRNA_P-wetherbeei_contig1217.3.1|Name=mRNA_P-wetherbeei_contig1217.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1250bp|location=Sequence derived from alignment at P-wetherbeei_contig1217:4224..5473- (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGGAGGCGGCCAAGACCCTCAGGAAGGGGTCGGGCAAGAAGGTGAC CAAGGTCCGAACGAAGGTTCACTTCTATAAGCCCAAGACGCTCAAGCTTG CGCGAAAGCCCAAGTATGCGCGAAAGGCAGCACCAGCGGTGAGTATCTAA TGTCCTATGCCAGCTGAAGCACAACACCCCATGTGCCATTTATGTCCCAG TGGCTTTAAAAGGGGCATTTCTTTCCAATTCCCCAGCGCATTATCAAGTC TTTGAGAGACTTCGTTCACGTGTGACTATCCTGAGGATGAATTTTAATGT TGTCAAAAAACTAAACTCTGGTTGTGGGGCGGCTGCTTCTCTTCGCTCTG CAGTTGAGCAAGATGGACAAGTACCGGACCATCAAGTACCCGCTGACGAC GGAGTCCGCGATGAAGAAGATTGAGGACAACAACACCCTCGTCTTCATCG TCGATGTCAAGGTTAGTTTTGCTTCTCGATCAATTGCTTTGGCCTGTGCC CGCATGCTTCTGAAAGCTTGTAAAAATCAAAGGTTTCAAGGCTAGACTTT ATTCAGGCGGAGGACGTAGAGTATTGTAGTTTTTTTGAGAATTGCTTCTT TTGGTTTATCATACTCAACCCGTCAAAGAAAAATGTCTTGGAATATGTCT GGTCAAGTCTCTTTCACTACATTGGTGGACGTATGCGGTTTCAGTTACTG GAGACGATTTGTTCAGAGCTTCTCCAATTTATGCCAACAGAACAGCTAAT TCAGATCTTTGCATCCTCTGGATGCTGTTTACGATTCTCACGCTATTAGG CGAACAAGCGCCAGATCAAGGACGCCGTCAAGGCGATGTACGACATCGTG TCGCAGAAGGTCAGCACAACGCGTCCCCGCTCTGTCGGCTTCCCAGCTTG CCATTGGTGCCGTACCACTGCTGTGGCCCCCATTTTCGATTCGTGCGGCT TGTTTGTCCAATCAGCCCCACTATTTTCGAAGTTCTCGAAAATATTTGCG CTGCCAGTCTGTGTTGGAAACCCTGCATCGTCTCCAGCATCGTCGGGTAA AACTTGGATTTAGCTTCCCCCCCAATCCCTCGGTTTGTTTTTTGCCTCGT TTGACTCGACGACTGGATTTTCTTTCGCTGTTCCCTGTCCTTCCTCAGGT CAATACGCTGATCCGGCCGGATGGGCAGAAGAAGGCGTACGTGCGATTGA CGCAGGACTACGATGCACTGGAGATTGCCAACCGGATCGGCATCATCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1217:4224..5473-

>mRNA_P-wetherbeei_contig1217.3.1 ID=mRNA_P-wetherbeei_contig1217.3.1|Name=mRNA_P-wetherbeei_contig1217.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig1217:4224..5473- (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGGAGGCGGCCAAGACCCTCAGGAAGGGGTCGGGCAAGAAGGTGAC
CAAGGTCCGAACGAAGGTTCACTTCTATAAGCCCAAGACGCTCAAGCTTG
CGCGAAAGCCCAAGTATGCGCGAAAGGCAGCACCAGCGTTGAGCAAGATG
GACAAGTACCGGACCATCAAGTACCCGCTGACGACGGAGTCCGCGATGAA
GAAGATTGAGGACAACAACACCCTCGTCTTCATCGTCGATGTCAAGGCGA
ACAAGCGCCAGATCAAGGACGCCGTCAAGGCGATGTACGACATCGTGTCG
CAGAAGGTCAATACGCTGATCCGGCCGGATGGGCAGAAGAAGGCGTACGT
GCGATTGACGCAGGACTACGATGCACTGGAGATTGCCAACCGGATCGGCA
TCATCTGA
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