mRNA_P-wetherbeei_contig1210.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1210.1.1
Unique NamemRNA_P-wetherbeei_contig1210.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1210.1.1 vs. uniprot
Match: A0A6H5L133_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L133_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.750e-11
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:  196 TLRRMQSWI----LLLAWAIVLTTLHGAEAYSARLRVQPGRAVAGEWFLEQPQLEVLGSDGATIATSFQGYATAQIQIDPS 426
            +L+R   WI    +L  W +      G  A++ RLRVQPGRAV GE FLEQPQ+E+L  DG  +   F+GYATA++   PS
Sbjct:   16 SLQRRHPWIQAAAILACWYVT-----GVHAHTLRLRVQPGRAVGGEAFLEQPQVEILEGDGGDVDVLFEGYATAEMISSPS 91
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BLAST of mRNA_P-wetherbeei_contig1210.1.1 vs. uniprot
Match: D7FJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ0_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.350e-10
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:  196 TLRRMQSWI----LLLAWAIVLTTLHGAEAYSARLRVQPGRAVAGEWFLEQPQLEVLGSDGATIATSFQGYATAQIQIDPS 426
            + +R   WI    +L  W I  T +H   A++ RLRVQPGRAV GE FLEQPQ+E+L  DG  +   F+GYATA++   PS
Sbjct:   16 SFQRRHPWIQAAAILACWYI--TKVH---AHTLRLRVQPGRAVGGEAFLEQPQVEILEGDGGDVDVLFEGYATAEMISSPS 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1210.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L133_9PHAE2.750e-1146.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJQ0_ECTSI3.350e-1048.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1210contigP-wetherbeei_contig1210:124..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJQ0
PFAMsCalx-beta,FG-GAP_2
Model size476
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons2
Evalue5.49e-11
EggNOG OGs28JEB@1|root,2QRTB@2759|Eukaryota
DescriptionFG-GAP repeat
Cds size474
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185937.9509318-CDS-P-wetherbeei_contig1210:123..5131683185937.9509318-CDS-P-wetherbeei_contig1210:123..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1210 124..513 +
1683185937.9589126-CDS-P-wetherbeei_contig1210:746..8301683185937.9589126-CDS-P-wetherbeei_contig1210:746..830Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1210 747..830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1210.1.1prot_P-wetherbeei_contig1210.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1210 124..830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1210.1.1

>prot_P-wetherbeei_contig1210.1.1 ID=prot_P-wetherbeei_contig1210.1.1|Name=mRNA_P-wetherbeei_contig1210.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
KTRATVRRFHTKYAIVSLSLLTHASMRRDRRAFGRMLAEVRRQAAHPKAR
LRRRKYSTREPRVFWTLRRMQSWILLLAWAIVLTTLHGAEAYSARLRVQP
GRAVAGEWFLEQPQLEVLGSDGATIATSFQGYATAQIQIDPSDVGSSTLW
CNNSSSPA
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mRNA from alignment at P-wetherbeei_contig1210:124..831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1210.1.1 ID=mRNA_P-wetherbeei_contig1210.1.1|Name=mRNA_P-wetherbeei_contig1210.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig1210:124..831+ (Phaeothamnion wetherbeei SAG_119_79)
AAAACAAGGGCTACGGTTCGCCGCTTTCACACCAAATATGCCATTGTGTC
ACTCTCGCTTCTCACACATGCCTCAATGAGACGCGACCGGCGGGCTTTTG
GTCGAATGCTCGCAGAAGTCAGGAGGCAGGCAGCTCACCCAAAGGCTCGT
CTACGGCGAAGAAAATATTCTACAAGGGAACCACGTGTATTCTGGACACT
CAGAAGAATGCAGAGCTGGATTCTACTCTTGGCTTGGGCGATTGTGTTAA
CTACGCTTCATGGTGCCGAGGCTTACAGCGCCCGGCTTCGCGTGCAGCCT
GGACGCGCAGTGGCGGGTGAATGGTTTCTGGAGCAGCCGCAGCTCGAGGT
GCTAGGGTCCGATGGCGCTACCATCGCCACCAGCTTTCAGGTCAGCGGTC
TTCATTTTTCGTCGGTGTAGTAACATTATCTGTGCAAAGGTGTACATTGT
GGGATGGTTTATCGTAGTTTTCACTTCCACTGGCCGCAGTTTCATGAAAG
CCTCGAGTAGATTGCGACAAAAGCCCCTATCTGTAAGTAGTAGATCGCTC
TCTTGTTCAAAATGGATCTGTCGTCCTCGCTATGGCCTCTTGTTTCCGTT
GCTCCGAACCCTCACAAACACAGGGCTACGCGACGGCGCAGATCCAGATC
GACCCGAGCGACGTCGGCAGCAGCACCCTTTGGTGCAACAACAGCTCCTC
GCCGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1210:124..831+

>mRNA_P-wetherbeei_contig1210.1.1 ID=mRNA_P-wetherbeei_contig1210.1.1|Name=mRNA_P-wetherbeei_contig1210.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig1210:124..831+ (Phaeothamnion wetherbeei SAG_119_79)
AAAACAAGGGCTACGGTTCGCCGCTTTCACACCAAATATGCCATTGTGTC
ACTCTCGCTTCTCACACATGCCTCAATGAGACGCGACCGGCGGGCTTTTG
GTCGAATGCTCGCAGAAGTCAGGAGGCAGGCAGCTCACCCAAAGGCTCGT
CTACGGCGAAGAAAATATTCTACAAGGGAACCACGTGTATTCTGGACACT
CAGAAGAATGCAGAGCTGGATTCTACTCTTGGCTTGGGCGATTGTGTTAA
CTACGCTTCATGGTGCCGAGGCTTACAGCGCCCGGCTTCGCGTGCAGCCT
GGACGCGCAGTGGCGGGTGAATGGTTTCTGGAGCAGCCGCAGCTCGAGGT
GCTAGGGTCCGATGGCGCTACCATCGCCACCAGCTTTCAGGGCTACGCGA
CGGCGCAGATCCAGATCGACCCGAGCGACGTCGGCAGCAGCACCCTTTGG
TGCAACAACAGCTCCTCGCCGGCG
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