mRNA_P-wetherbeei_contig11979.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11979.1.1
Unique NamemRNA_P-wetherbeei_contig11979.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11979.1.1 vs. uniprot
Match: UPI000834663B (hypothetical protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=UPI000834663B)

HSP 1 Score: 170 bits (431), Expect = 9.360e-53
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 1 
Query:    1 MSALDKAVAELEAKRAKDNAERKARQQAASALLKEFFEADVAPSGKLKQHGVQAAFDGMRIMLTKPEEGVYAEGMLIVVGEQGEIDVSGRSLGIVGSADKDAKKKELIAEIIAHFSL 351
            MSALDKAVAELEAKRAKD   R+ARQ AASA LKEFFEAD+ PS KLK +GVQA FDG RI+L +PEEGVYAEGM+IVVGEQGEIDV+GRSLG VG+ADK  KK ELI EII+HFSL
Sbjct:    1 MSALDKAVAELEAKRAKDEDARRARQDAASAFLKEFFEADLVPSTKLKDNGVQAVFDGKRILLQRPEEGVYAEGMMIVVGEQGEIDVNGRSLGPVGTADKVTKKNELIVEIISHFSL 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11979.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000834663B9.360e-5378.63hypothetical protein n=1 Tax=Rhodoplanes sp. Z2-YC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11979contigP-wetherbeei_contig11979:70..423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.460857-CDS-P-wetherbeei_contig11979:69..4231683185933.460857-CDS-P-wetherbeei_contig11979:69..423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11979 70..423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11979.1.1prot_P-wetherbeei_contig11979.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11979 70..423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11979.1.1

>prot_P-wetherbeei_contig11979.1.1 ID=prot_P-wetherbeei_contig11979.1.1|Name=mRNA_P-wetherbeei_contig11979.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MSALDKAVAELEAKRAKDNAERKARQQAASALLKEFFEADVAPSGKLKQH
GVQAAFDGMRIMLTKPEEGVYAEGMLIVVGEQGEIDVSGRSLGIVGSADK
DAKKKELIAEIIAHFSL*
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mRNA from alignment at P-wetherbeei_contig11979:70..423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11979.1.1 ID=mRNA_P-wetherbeei_contig11979.1.1|Name=mRNA_P-wetherbeei_contig11979.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig11979:70..423+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCGCTGGACAAGGCGGTCGCTGAGCTCGAAGCCAAGCGCGCCAA
AGACAATGCAGAACGCAAGGCGCGGCAGCAGGCCGCGAGTGCGCTCCTGA
AGGAGTTTTTCGAGGCCGATGTCGCGCCATCGGGAAAGTTGAAGCAGCAC
GGGGTGCAGGCCGCTTTCGACGGCATGCGCATCATGCTCACGAAGCCCGA
AGAGGGTGTGTATGCGGAAGGAATGTTGATCGTGGTCGGCGAGCAGGGCG
AAATCGATGTCAGCGGACGTTCGCTGGGAATCGTCGGCTCGGCCGATAAG
GATGCAAAGAAGAAAGAACTGATTGCCGAGATCATCGCGCATTTCAGCTT
GTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11979:70..423+

>mRNA_P-wetherbeei_contig11979.1.1 ID=mRNA_P-wetherbeei_contig11979.1.1|Name=mRNA_P-wetherbeei_contig11979.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig11979:70..423+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCGCTGGACAAGGCGGTCGCTGAGCTCGAAGCCAAGCGCGCCAA
AGACAATGCAGAACGCAAGGCGCGGCAGCAGGCCGCGAGTGCGCTCCTGA
AGGAGTTTTTCGAGGCCGATGTCGCGCCATCGGGAAAGTTGAAGCAGCAC
GGGGTGCAGGCCGCTTTCGACGGCATGCGCATCATGCTCACGAAGCCCGA
AGAGGGTGTGTATGCGGAAGGAATGTTGATCGTGGTCGGCGAGCAGGGCG
AAATCGATGTCAGCGGACGTTCGCTGGGAATCGTCGGCTCGGCCGATAAG
GATGCAAAGAAGAAAGAACTGATTGCCGAGATCATCGCGCATTTCAGCTT
GTGA
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