mRNA_P-wetherbeei_contig11895.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11895.1.1
Unique NamemRNA_P-wetherbeei_contig11895.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11895.1.1 vs. uniprot
Match: D7FRP4_ECTSI (Similar to Iron-containing Alcohol Dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP4_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.780e-27
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 DAVALQYGVT-------AMAGDTFFSCDTRVIFGVNALEIGVAEMVATRLRRPLVVTGWNQARADALVWELYPRNFDLAWMSVVAEPTCEDIIDGA 267
            D  ALQYGVT       A A   FFS DTRV+FGVNALEIG+ E+    L+R ++VTGWNQARAD +VWEL PR FDL W SV +EP+  D+ +GA
Sbjct:   66 DNSALQYGVTVGAEAAGAGAAHHFFSADTRVVFGVNALEIGLVELYDLGLQRAMIVTGWNQARADPVVWELLPRGFDLKWHSVSSEPSLSDVAEGA 161
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BLAST of mRNA_P-wetherbeei_contig11895.1.1 vs. uniprot
Match: A0A7S1XY77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY77_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.020e-11
Identity = 32/83 (38.55%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:   13 LQYGVTAMAGDTFFSCDTRVIFGVNALEIGVAEMVATRLRRPLVVTGWNQARADALVWELYPRNFDLAWMSVVAEPTCEDIID 261
            L+ G+    G   F+  T+V FG+NALE+ + E  A    + L++TG+N ARADA++WE  PR   L  ++V+AEP+  ++ +
Sbjct:    4 LKLGLFGDLGPGGFATRTKVFFGLNALEVAMIEARALG-DQMLLLTGFNAARADAVIWETEPRGMKLHAINVIAEPSATEVAE 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11895.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRP4_ECTSI2.780e-2758.33Similar to Iron-containing Alcohol Dehydrogenase n... [more]
A0A7S1XY77_9STRA4.020e-1138.55Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11895contigP-wetherbeei_contig11895:178..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionSimilar to Iron-containing Alcohol Dehydrogenase
Ec32 orthologEc-00_003330.1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.2753398-CDS-P-wetherbeei_contig11895:177..4441683185930.2753398-CDS-P-wetherbeei_contig11895:177..444Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11895 178..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11895.1.1prot_P-wetherbeei_contig11895.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11895 178..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11895.1.1

>prot_P-wetherbeei_contig11895.1.1 ID=prot_P-wetherbeei_contig11895.1.1|Name=mRNA_P-wetherbeei_contig11895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
DAVALQYGVTAMAGDTFFSCDTRVIFGVNALEIGVAEMVATRLRRPLVVT
GWNQARADALVWELYPRNFDLAWMSVVAEPTCEDIIDGA
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mRNA from alignment at P-wetherbeei_contig11895:178..444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11895.1.1 ID=mRNA_P-wetherbeei_contig11895.1.1|Name=mRNA_P-wetherbeei_contig11895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig11895:178..444- (Phaeothamnion wetherbeei SAG_119_79)
GATGCGGTTGCTCTGCAGTATGGCGTCACTGCGATGGCCGGCGACACCTT
TTTCTCGTGCGACACGCGCGTAATCTTCGGCGTCAACGCTCTCGAAATCG
GGGTTGCAGAAATGGTGGCGACGCGACTGCGAAGACCCCTCGTCGTGACG
GGCTGGAATCAGGCCCGCGCGGATGCGCTGGTGTGGGAGCTGTACCCGCG
TAACTTTGACCTGGCCTGGATGAGCGTCGTGGCGGAGCCGACATGCGAAG
ATATTATCGATGGTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11895:178..444-

>mRNA_P-wetherbeei_contig11895.1.1 ID=mRNA_P-wetherbeei_contig11895.1.1|Name=mRNA_P-wetherbeei_contig11895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig11895:178..444- (Phaeothamnion wetherbeei SAG_119_79)
GATGCGGTTGCTCTGCAGTATGGCGTCACTGCGATGGCCGGCGACACCTT
TTTCTCGTGCGACACGCGCGTAATCTTCGGCGTCAACGCTCTCGAAATCG
GGGTTGCAGAAATGGTGGCGACGCGACTGCGAAGACCCCTCGTCGTGACG
GGCTGGAATCAGGCCCGCGCGGATGCGCTGGTGTGGGAGCTGTACCCGCG
TAACTTTGACCTGGCCTGGATGAGCGTCGTGGCGGAGCCGACATGCGAAG
ATATTATCGATGGTGCG
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