mRNA_P-wetherbeei_contig11842.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11842.1.1
Unique NamemRNA_P-wetherbeei_contig11842.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11842.1.1 vs. uniprot
Match: A0A6H5KAX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAX4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.780e-31
Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 2 
Query:  188 WIIRMTITGKKDDANRVPVRVSFGCTFAEDNSRLIV-TPGSVVRRGYVWAPDRDRNEGETYLAFDVEVRGLSAVADGKLYLNARVQPVAPDGGEGTGGYALTDGVITVKEVLKQSLPWGIFNAAGLLAEFNVVGAFSAAP 604
            W I M + G K D NRVPVR+ F C FAE++  L V +    V+RGYVW PDR+ +E + ++ F  EV GLSAV DG++++N  +  +  +G +G   Y  ++G +T+KEV+ +S  WG+FN AGLLAEF VVG + A+P
Sbjct:   96 WKIVMDLRGVKSDKNRVPVRLVFCCKFAEEDFILEVESDNRFVKRGYVWEPDRNDDEDKEFITFIAEVEGLSAVPDGRIFMNGFIDKI--EGDDGKTRYKFSEGAVTIKEVIDKSF-WGVFNTAGLLAEFKVVGTWDASP 232
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BLAST of mRNA_P-wetherbeei_contig11842.1.1 vs. uniprot
Match: A0A836CMB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.950e-27
Identity = 63/114 (55.26%), Postives = 83/114 (72.81%), Query Frame = 2 
Query:  266 FAEDNSRLIVTPGS-VVRRGYVWAPDRDRNEGETYLAFDVEVRGLSAVADGKLYLNARVQPVAPDGGEGTGGYALTDGVITVKEVLKQSLPWGIFNAAGLLAEFNVVGAFSAAP 604
            F+ D++ L+V+ G+  + RGY+WAPDRD N   TY+AFD+ V+GLSAV DGKLYLNARV     D  + TGGY L+DGV+T+KEV  +   +G+F+ AG+LAEF VVG F A P
Sbjct:   72 FSSDDNILLVSAGTPAITRGYIWAPDRDANR--TYIAFDIGVKGLSAVPDGKLYLNARV-----DQDDATGGYKLSDGVLTIKEVDNRR-GFGLFSFAGILAEFKVVGEFVATP 177
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11842.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAX4_9PHAE1.780e-3146.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMB8_9STRA1.950e-2755.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11842contigP-wetherbeei_contig11842:737..1874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size792
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001100.1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.093127-UTR-P-wetherbeei_contig11842:736..8821683185928.093127-UTR-P-wetherbeei_contig11842:736..882Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11842 737..882 -
1683185928.1384878-UTR-P-wetherbeei_contig11842:1675..18741683185928.1384878-UTR-P-wetherbeei_contig11842:1675..1874Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11842 1676..1874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.1031265-CDS-P-wetherbeei_contig11842:882..11431683185928.1031265-CDS-P-wetherbeei_contig11842:882..1143Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11842 883..1143 -
1683185928.1125252-CDS-P-wetherbeei_contig11842:1358..14251683185928.1125252-CDS-P-wetherbeei_contig11842:1358..1425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11842 1359..1425 -
1683185928.1216917-CDS-P-wetherbeei_contig11842:1556..16751683185928.1216917-CDS-P-wetherbeei_contig11842:1556..1675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11842 1557..1675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11842.1.1prot_P-wetherbeei_contig11842.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11842 883..1675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11842.1.1

>prot_P-wetherbeei_contig11842.1.1 ID=prot_P-wetherbeei_contig11842.1.1|Name=mRNA_P-wetherbeei_contig11842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MTITGKKDDANRVPVRVSFGCTFAEDNSRLIVTPGSVVRRGYVWAPDRDR
NEGETYLAFDVEVRGLSAVADGKLYLNARVQPVAPDGGEGTGGYALTDGV
ITVKEVLKQSLPWGIFNAAGLLAEFNVVGAFSAAPAPAAANGDGGSAA*
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mRNA from alignment at P-wetherbeei_contig11842:737..1874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11842.1.1 ID=mRNA_P-wetherbeei_contig11842.1.1|Name=mRNA_P-wetherbeei_contig11842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1138bp|location=Sequence derived from alignment at P-wetherbeei_contig11842:737..1874- (Phaeothamnion wetherbeei SAG_119_79)
CCGCCTTGGAAGAGGCTTTGGAGCCGTTGCGAAGAGAGGTCGTAGTCGAA
GAGCGGGCGAGATATCCTCCAACTCTTCTTGACAGCAGGTTAGACTTATA
TTGAAGGATCAGCAATGCCCCAAAAGAACGGGGTGTGGTGGTGCAAAGCC
TCAGGCTACACGCTCTCCCTTTTCCTCTCTATTCAGCTGGATCATTCGCA
TGACCATCACGGGCAAGAAGGACGATGCCAATCGGGTACCGGTCCGCGTC
TCATTTGGCTGCACTTTTGCCGAGGACAATTCGCGCCTAATCGTTACACC
TGGCTCCGTCGTTCGAAGGTACGGCGGCCTTTATGGCAGCGTCTGCACAT
TAATTGTTGCAAATAGGACGATTAAAAGTCTTTTCGAGGCTCAAAGTGCG
TCCTTCAAATTCCATGGTATTGCACCGCTCCTTTTTTCCTTCTTCTCAGA
GGATATGTCTGGGCGCCTGACCGGGATAGGAACGAAGGCGAGACATACCT
GGCCTTCGATGTCGAGGTATAGCTTTGTTTTTCAACTCCTCTTTCTGTTT
GCAACAGTCTCGCTATTCGGTGGTTTGTTTTCGTCAGCGGTGCTTTCATT
TTGCGTGGCCAAAAATCATTTTCTCACCATTTTAGTGGGGACACCTTCCA
CAAGACTTCGTTTGGAAAGCCGGTATTCCCCACTTCACACCTCCGCCCTT
CCGCCCTGTCCCGTTCCTTCACAACATGCAGGTGCGCGGTTTGTCGGCGG
TTGCGGACGGAAAGTTGTACCTGAACGCGCGCGTGCAGCCGGTCGCGCCG
GATGGCGGCGAGGGCACCGGCGGTTACGCCTTGACTGATGGAGTCATAAC
CGTCAAAGAAGTGCTGAAGCAAAGCCTCCCGTGGGGCATCTTCAATGCAG
CCGGACTTCTGGCGGAATTCAATGTCGTTGGTGCGTTCTCCGCGGCGCCG
GCGCCAGCCGCTGCAAACGGAGACGGGGGGAGCGCTGCTTGACCGCACGG
CGGCGGCAGCAATAACAAAAGCAGTGCGGGCTCCTAGTTGTCATCGCGTC
TGGGATGCATTCTCAATTGAAGTACGACCGGAGGAAAGGAAAAAAGAAAA
AAAAGAGAAGTATTTATTGATCTTCACTCTTTCCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11842:737..1874-

>mRNA_P-wetherbeei_contig11842.1.1 ID=mRNA_P-wetherbeei_contig11842.1.1|Name=mRNA_P-wetherbeei_contig11842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig11842:737..1874- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCATCACGGGCAAGAAGGACGATGCCAATCGGGTACCGGTCCGCGT
CTCATTTGGCTGCACTTTTGCCGAGGACAATTCGCGCCTAATCGTTACAC
CTGGCTCCGTCGTTCGAAGAGGATATGTCTGGGCGCCTGACCGGGATAGG
AACGAAGGCGAGACATACCTGGCCTTCGATGTCGAGGTGCGCGGTTTGTC
GGCGGTTGCGGACGGAAAGTTGTACCTGAACGCGCGCGTGCAGCCGGTCG
CGCCGGATGGCGGCGAGGGCACCGGCGGTTACGCCTTGACTGATGGAGTC
ATAACCGTCAAAGAAGTGCTGAAGCAAAGCCTCCCGTGGGGCATCTTCAA
TGCAGCCGGACTTCTGGCGGAATTCAATGTCGTTGGTGCGTTCTCCGCGG
CGCCGGCGCCAGCCGCTGCAAACGGAGACGGGGGGAGCGCTGCTTGA
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