mRNA_P-wetherbeei_contig11708.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11708.1.1
Unique NamemRNA_P-wetherbeei_contig11708.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11708.1.1 vs. uniprot
Match: A0A4Z2DS29_SCHJA (TBC domain-containing protein kinase-like protein n=2 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2DS29_SCHJA)

HSP 1 Score: 57.8 bits (138), Expect = 2.540e-6
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 1 
Query:    1 MLRRVLVAWLAAEPQSRQYRQGLDLLAAPLLAVLLSRRDPNRSGSSVVLERRASALLDRVVTRHAGRYFSHGVTADIAFRASLSTIVRVLRFWDPELALRVXXXXXXXXXFAMPWLVTLFADTLTLPDTCDAWDLLLPLGPA 426
            +LRRVL+A L  +P +  Y QG+D +AA  + +      P+ + ++  L    SA L    T+  G + S G+T  +  ++  ST++R+L F  P LA+R+             W+ TLFA T+ L      WD ++P GPA
Sbjct:  414 VLRRVLLATLLMKPGTLDYTQGMDSVAAVFVRICY----PDEALAAACL----SAFLS---TKLPGFFSSGGLT--VGLKSYFSTLIRLLAFHLPRLAVRLVEMNVPLIGLTTGWIYTLFAHTMPLDRIELLWDTIIP-GPA 541
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BLAST of mRNA_P-wetherbeei_contig11708.1.1 vs. uniprot
Match: A0A507FBQ0_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FBQ0_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 3.940e-5
Identity = 44/140 (31.43%), Postives = 64/140 (45.71%), Query Frame = 1 
Query:   10 RVLVAWLAAEPQSRQYRQGLDLLAAPLLAVLLSRRDPNRSGSSVVLERRASALLDRVVTRHAGRYFSHGVTAD--IAFRASLSTIVRVLRFWDPELALRVXXXXXXXXXFAMPWLVTLFADTLTLPDTCDAWDLLLPLGP 423
            R+L AW+ +E  +  Y QGLD L AP LA  L+  D          E RA   L   +    G+YF      D  +A    ++ +  +  + DP+LA  +         FA+PW++T+FA    L      WD +L LGP
Sbjct:  535 RILKAWVLSEEGNLVYWQGLDSLMAPFLA--LNFND----------EARAFLCLKAFI----GKYFDGLFMEDNSVALNRHITAVKCITSYRDPQLASHLIELGITPDMFAIPWIMTMFAQIFQLDRLYHLWDTIL-LGP 657
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11708.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4Z2DS29_SCHJA2.540e-632.39TBC domain-containing protein kinase-like protein ... [more]
A0A507FBQ0_9FUNG3.940e-531.43Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11708contigP-wetherbeei_contig11708:784..1626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog28583.AMAG_07354T0
PFAMsPkinase,RabGAP-TBC,Rhodanese
Model size603
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.4e-11
EggNOG OGsKOG1093@1|root,KOG1093@2759|Eukaryota,38BEV@33154|Opisthokonta,3NXSZ@4751|Fungi
DescriptionTBCK protein kinase
Cds size603
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.3628566-CDS-P-wetherbeei_contig11708:783..12531683185923.3628566-CDS-P-wetherbeei_contig11708:783..1253Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11708 784..1253 -
1683185923.3710303-CDS-P-wetherbeei_contig11708:1493..16261683185923.3710303-CDS-P-wetherbeei_contig11708:1493..1626Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11708 1494..1626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11708.1.1prot_P-wetherbeei_contig11708.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11708 784..1626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11708.1.1

>prot_P-wetherbeei_contig11708.1.1 ID=prot_P-wetherbeei_contig11708.1.1|Name=mRNA_P-wetherbeei_contig11708.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
MLRRVLVAWLAAEPQSRQYRQGLDLLAAPLLAVLLSRRDPNRSGSSVVLE
RRASALLDRVVTRHAGRYFSHGVTADIAFRASLSTIVRVLRFWDPELALR
VWEMELVPELFAMPWLVTLFADTLTLPDTCDAWDLLLPLGPACAAAAAAA
LLCSPAVRGPLLAAASLEDALVFISALNGGAVAVDVRWVVLRAMVLYAET
P
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mRNA from alignment at P-wetherbeei_contig11708:784..1626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11708.1.1 ID=mRNA_P-wetherbeei_contig11708.1.1|Name=mRNA_P-wetherbeei_contig11708.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig11708:784..1626- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGACGGGTGCTGGTGGCCTGGTTGGCGGCCGAGCCGCAGTCACG
GCAGTACCGGCAGGGGCTGGACTTGCTGGCGGCACCGCTGCTGGCCGTCC
TGCTCTCCCGCCGGGATCCCAACCGCTCCGGGTGTGCGTCGTTATCGACG
TCGCCGGCGTTGCCGGCAGAGCTGGCTACATCGCCCGCTGGTTCTCCGGC
GGCGGCGAACGGATTCGAGAACGCTGCAGCAGCGGCGGTGCTGGAGGACG
TAGGAACGGCAGCAGCTGCAGAGGCAGAGAAGGTTGCGAACATGGATGGG
GCAACGGCGGCGACGGCGAGAACTCTCACAGCGGCGGCCGAGCCGTCGGC
GACGGCGGCTCTGACAGCGGAAGCGTCGGTGGTACTCGAACGGCGAGCGT
CGGCGCTGCTCGACCGCGTCGTGACGCGCCATGCCGGCCGCTACTTCTCG
CATGGCGTGACGGCCGACATTGCCTTCCGCGCCTCCCTTAGCACCATCGT
CCGCGTACTCCGCTTCTGGGACCCGGAGCTGGCGCTGCGCGTGTGGGAAA
TGGAGCTCGTGCCCGAACTCTTCGCGATGCCGTGGCTCGTGACGCTCTTC
GCTGACACACTGACGCTGCCGGACACGTGCGATGCCTGGGACCTCCTGTT
GCCACTGGGCCCGGCCTGCGCCGCGGCGGCGGCGGCGGCGCTGCTCTGCT
CGCCGGCGGTGCGCGGGCCGCTGCTGGCGGCGGCATCGCTGGAGGACGCG
CTGGTGTTCATCTCGGCGCTCAACGGTGGCGCTGTCGCTGTCGACGTGCG
GTGGGTCGTGCTTCGCGCCATGGTACTGTACGCCGAGACGCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11708:784..1626-

>mRNA_P-wetherbeei_contig11708.1.1 ID=mRNA_P-wetherbeei_contig11708.1.1|Name=mRNA_P-wetherbeei_contig11708.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig11708:784..1626- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGACGGGTGCTGGTGGCCTGGTTGGCGGCCGAGCCGCAGTCACG
GCAGTACCGGCAGGGGCTGGACTTGCTGGCGGCACCGCTGCTGGCCGTCC
TGCTCTCCCGCCGGGATCCCAACCGCTCCGGGTCGTCGGTGGTACTCGAA
CGGCGAGCGTCGGCGCTGCTCGACCGCGTCGTGACGCGCCATGCCGGCCG
CTACTTCTCGCATGGCGTGACGGCCGACATTGCCTTCCGCGCCTCCCTTA
GCACCATCGTCCGCGTACTCCGCTTCTGGGACCCGGAGCTGGCGCTGCGC
GTGTGGGAAATGGAGCTCGTGCCCGAACTCTTCGCGATGCCGTGGCTCGT
GACGCTCTTCGCTGACACACTGACGCTGCCGGACACGTGCGATGCCTGGG
ACCTCCTGTTGCCACTGGGCCCGGCCTGCGCCGCGGCGGCGGCGGCGGCG
CTGCTCTGCTCGCCGGCGGTGCGCGGGCCGCTGCTGGCGGCGGCATCGCT
GGAGGACGCGCTGGTGTTCATCTCGGCGCTCAACGGTGGCGCTGTCGCTG
TCGACGTGCGGTGGGTCGTGCTTCGCGCCATGGTACTGTACGCCGAGACG
CCT
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