mRNA_P-wetherbeei_contig11692.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11692.1.1
Unique NamemRNA_P-wetherbeei_contig11692.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11692.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11692contigP-wetherbeei_contig11692:351..1407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons3
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185922.6225598-UTR-P-wetherbeei_contig11692:350..3651683185922.6225598-UTR-P-wetherbeei_contig11692:350..365Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11692 351..365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185922.6337209-CDS-P-wetherbeei_contig11692:365..4731683185922.6337209-CDS-P-wetherbeei_contig11692:365..473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11692 366..473 +
1683185922.6443589-CDS-P-wetherbeei_contig11692:687..8851683185922.6443589-CDS-P-wetherbeei_contig11692:687..885Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11692 688..885 +
1683185922.6560917-CDS-P-wetherbeei_contig11692:1308..14071683185922.6560917-CDS-P-wetherbeei_contig11692:1308..1407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11692 1309..1407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11692.1.1prot_P-wetherbeei_contig11692.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11692 366..1407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11692.1.1

>prot_P-wetherbeei_contig11692.1.1 ID=prot_P-wetherbeei_contig11692.1.1|Name=mRNA_P-wetherbeei_contig11692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MPTPHPSAESSAAPTRRPTPEPTAGPTRRPTPDPTPAAVTREPTAPGATQ
MPTTTPTIRKTPTTPQPTISQRPTKTPTTLKPTKMPVESPTNTPATARPT
KQPMSAGGPTPKPTPRTHRPTKREAPPVRTPAPTD
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mRNA from alignment at P-wetherbeei_contig11692:351..1407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11692.1.1 ID=mRNA_P-wetherbeei_contig11692.1.1|Name=mRNA_P-wetherbeei_contig11692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1057bp|location=Sequence derived from alignment at P-wetherbeei_contig11692:351..1407+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCATCCTCCGCCATGCCCACGCCGCATCCGTCGGCCGAATCCAGCGC
CGCGCCGACGCGGCGGCCCACCCCGGAACCCACCGCTGGGCCGACGCGCC
GACCGACCCCGGACCCCACGCCGGTAAGGGGAAGTGCCTGCCTCGCGGTA
TGGACATTGAAAATTTGTTTGCACGGACCTGTTCAATCCTTCCCGTACCG
AAACTCGCTTCCCGCTTTCCTCCCTCTGCTGTCATTATAGGGCAGGTTGC
ACGCCGATCCAAAGCCGCTGCATTCGCTCCAGTGCCAAAGAATACCGCAT
CCTTGACAAACCGTTCCCGCCGTTTCCACAAATGTAGGCGGCGGTCACAC
GCGAGCCGACCGCACCCGGGGCGACACAAATGCCGACCACCACCCCGACC
ATTCGAAAAACTCCTACAACGCCCCAGCCGACGATCAGCCAACGCCCAAC
CAAAACTCCTACTACGCTGAAACCCACCAAGATGCCCGTGGAGTCGCCCA
CCAACACGCCCGCCACTGCTCGCCCGACCAAGCAGGTATAGTACCGAAGA
TGATGGTTCGCCAACCAATGACGATACGCTGGGCGACTTTTTTCCTACAG
CGACCTCTGTACCGCTCCTCGCGCCTGCCGGCACATTTTTACTTCCAACG
AGTGTGCATTCCAGGAGTCGTGAAGGGAATGCCGCTGTTCCGAAGCACTG
GCCGGCCGTCTTTATCATGCTGCCTGCATGAAAGACCTGTTTGCTGCGCC
TCCAAACCCGTCGCCGTTCTTACCGCTGTCACCTGCTGCCTTTCTGCCTC
CTCGTCTCGCCCTCTGTCGCCTTCCACCGCCATTTTTCACCGCCCGTCCG
TCTGTTTGCTGCCGCTGACTGCCCGCTATCGCCGCCGGTGTAAACGGAAC
GCGAACAAACAAAATAAAACTTATGTACACACACACACACACACAAAACG
CGATCCAGCCGATGTCCGCGGGAGGTCCGACGCCCAAGCCTACGCCTCGC
ACGCACCGGCCAACGAAGCGCGAGGCACCGCCGGTGCGGACGCCGGCGCC
GACGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11692:351..1407+

>mRNA_P-wetherbeei_contig11692.1.1 ID=mRNA_P-wetherbeei_contig11692.1.1|Name=mRNA_P-wetherbeei_contig11692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig11692:351..1407+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCACGCCGCATCCGTCGGCCGAATCCAGCGCCGCGCCGACGCGGCG
GCCCACCCCGGAACCCACCGCTGGGCCGACGCGCCGACCGACCCCGGACC
CCACGCCGGCGGCGGTCACACGCGAGCCGACCGCACCCGGGGCGACACAA
ATGCCGACCACCACCCCGACCATTCGAAAAACTCCTACAACGCCCCAGCC
GACGATCAGCCAACGCCCAACCAAAACTCCTACTACGCTGAAACCCACCA
AGATGCCCGTGGAGTCGCCCACCAACACGCCCGCCACTGCTCGCCCGACC
AAGCAGCCGATGTCCGCGGGAGGTCCGACGCCCAAGCCTACGCCTCGCAC
GCACCGGCCAACGAAGCGCGAGGCACCGCCGGTGCGGACGCCGGCGCCGA
CGGAT
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