mRNA_P-wetherbeei_contig1167.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1167.1.1
Unique NamemRNA_P-wetherbeei_contig1167.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1167.1.1 vs. uniprot
Match: D8LP13_ECTSI (Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP13_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.800e-30
Identity = 74/142 (52.11%), Postives = 91/142 (64.08%), Query Frame = 1 
Query:    1 DVNALQAATAALTNLAALHERNAAALVAAGGVTTLAAVLDSPRTEDLLNLDQVDEIHANAAEALANATADVHGSAVAAAIAARAAEQLHDAGLRQLVLLCGSRNLQVRRHMALVLGNVAQRDDHRAAVGRCGGVEALITLCE 426
            DV+A+QAATAAL NL    E NA  LVAAGG+  L  ++ S +  +LL+ DQ +EI ANAAEAL NAT + HG  V          ++H  G+  LVL+CGS NLQV+RH ALV+GNV Q D HRA  G  G  EAL  LC+
Sbjct: 2342 DVDAVQAATAALANLLCYSEANAVRLVAAGGIGVLVGLVSSYKPHNLLDFDQAEEIQANAAEALVNATRN-HGDEVTV--------RIHSLGISPLVLMCGSHNLQVQRHAALVIGNVCQTDVHRATAGDEGAAEALFALCD 2474
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BLAST of mRNA_P-wetherbeei_contig1167.1.1 vs. uniprot
Match: A0A7S1XVT1_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVT1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.390e-19
Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:   88 GGVTTLAAVLDSPRTEDLLNLDQVDEIHANAAEALANATADVHGSAVAAAIAARAAEQLHDAGLRQLVLLCGSRNLQVRRHMALVLGNVAQRDDHRAAVGRCGGVEALITLCE 426
            GGV  L  V+ + R  +L ++DQ++E HANAAEALAN T  V G  ++         Q+H  G+  LVLLCGS+NLQV+RH ALVLGNV+  D+ R  VG  GGVEAL+ L E
Sbjct:  670 GGVEILLRVIATARAANLTDVDQINETHANAAEALANITRYV-GPNISL--------QIHAIGVGPLVLLCGSKNLQVQRHAALVLGNVSLSDEERELVGVRGGVEALMRLVE 773
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BLAST of mRNA_P-wetherbeei_contig1167.1.1 vs. uniprot
Match: A0A6H5KXM7_9PHAE (Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.260e-16
Identity = 54/108 (50.00%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:    1 DVNALQAATAALTNLAALHERNAAALVAAGGVTTLAAVLDSPRTEDLLNLDQVDEIHANAAEALANATADVHGSAVAAAIAARAAEQLHDAGLRQLVLLCGSRNLQVR 324
            DV+A+QAATAAL NL    E NA  LVAAGG+  L  ++ S +  +LL+ DQ +EI ANAAEAL NAT + HG  V          ++H  G+  LVL+CGS NLQ R
Sbjct: 1011 DVDAVQAATAALANLLCYSEANAVRLVAAGGIGVLVGLVSSYKPYNLLDFDQAEEIQANAAEALVNATRN-HGDEVTV--------RIHSLGISPLVLMCGSHNLQER 1109
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BLAST of mRNA_P-wetherbeei_contig1167.1.1 vs. uniprot
Match: A0A482SRP9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRP9_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 8.720e-14
Identity = 46/138 (33.33%), Postives = 77/138 (55.80%), Query Frame = 1 
Query:   13 LQAATAALTNLAALHERNAAALVAAGGVTTLAAVLDSPRTEDLLNLDQVDEIHANAAEALANATADVHGSAVAAAIAARAAEQLHDAGLRQLVLLCGSRNLQVRRHMALVLGNVAQRDDHRAAVGRCGGVEALITLCE 426
            L+A+T+AL NL + +++N    +   GV     VL +P TE+LL+ DQ DE+ AN +E L N +     + ++            +  ++ L+LLC   N+Q +R++ L+LGN++Q +  R  +G  GG+EAL    E
Sbjct: 1461 LEASTSALANLTSYNDKNCRYFIENDGVAVSVKVLVNPNTENLLDSDQSDEVQANISELLTNVSRYNTDATIS---------YFTEDIIQSLILLCACNNIQCKRYVPLILGNISQNNVVRGHIGMLGGIEALFLALE 1589
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BLAST of mRNA_P-wetherbeei_contig1167.1.1 vs. uniprot
Match: A0A7S3MFS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFS1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.160e-11
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:  112 VLDSPRTEDLLNLDQVDEIHANAAEALANATADVHGSAVAAAIAARAAEQLHDAGLRQLVLLCGSRNLQVRRHMALVLGNVAQRDDHRAAVGRCGGVEALITLCE 426
            V+ S  +E+LL+LDQ DE+ ANAAE LAN    V   +V A +   + + + DA    LV++C S+N Q+RRH+ LVLGN+ Q +  R  +G  GG+EAL  + E
Sbjct:    3 VVTSSYSENLLDLDQNDEVQANAAELLAN----VSRFSVDATVPYFSGKVI-DA----LVVMCASQNKQLRRHIPLVLGNIGQLERCRQEIGVKGGIEALFLVLE 98
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BLAST of mRNA_P-wetherbeei_contig1167.1.1 vs. uniprot
Match: A0A6S8DG82_9STRA (Vacuolar protein 8 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8DG82_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.680e-9
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 1 
Query:    1 DVNALQAATAALTNLAALHERNAAALVAAGGVTTLAAVLDSPRTEDLLNLDQVDEIHANAAEALANATADVH----------------GSAVAA-------AIAARAAEQLHDAGLRQ------LVLLCGSRNLQVRRHMALVLGNVAQRDDHRAAVGRCGGVEAL 411
            D +  +AA+ AL N+ +LH  NA  L  +GG+  L  +++S  T +LL++DQ  EI  NAA ALANA A++                 GS++ +       AI     E  +   LR       +VLLC S+ +Q +   AL++GN+A  D  +  +G  G ++AL
Sbjct:  236 DTDVAEAASCALANVLSLHVPNATKLTVSGGLEVLFHIVNSHFTVNLLDVDQTIEIQTNAANALANAAANLGVEGRSKLIAAVDASLIGSSLTSTDNGDNIAIKIPGQESPNSIALRNSSPMAAIVLLCASQLVQAKIAAALLIGNLACDDFVQTQLGNVGAIDAL 401
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1167.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LP13_ECTSI1.800e-3052.11Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S1XVT1_9STRA1.390e-1951.33Vacuolar protein 8 (Fragment) n=1 Tax=Phaeomonas p... [more]
A0A6H5KXM7_9PHAE3.260e-1650.00Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A482SRP9_9ARCH8.720e-1433.33Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3MFS1_9STRA8.160e-1143.81Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6S8DG82_9STRA7.680e-932.53Vacuolar protein 8 n=1 Tax=Aureoumbra lagunensis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1167contigP-wetherbeei_contig1167:539..1512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LP13
Preferred nameVAC8
PFAMsArm
Model size427
Max annot lvl2759|Eukaryota
KEGG koko:K08332
Hectar predicted targeting categoryother localisation
GOsGO:0000011,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0006914,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009607,GO:0009987,GO:0016020,GO:0016043,GO:0016050,GO:0016236,GO:0016237,GO:0022406,GO:0022607,GO:0030447,GO:0030448,GO:0031090,GO:0032258,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034727,GO:0036180,GO:0040007,GO:0042144,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043495,GO:0044085,GO:0044182,GO:0044232,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0048284,GO:0048308,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0061024,GO:0061025,GO:0061919,GO:0070727,GO:0070925,GO:0071255,GO:0071561,GO:0071562,GO:0071563,GO:0071840,GO:0072665,GO:0097576,GO:0098588,GO:0098805,GO:0098852,GO:0140056
Exons4
Evalue2.95e-31
EggNOG OGsKOG4224@1|root,KOG4224@2759|Eukaryota
Descriptionnucleus-vacuole junction assembly
Cds size426
COG categoryS
BRITEko00000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185921.6317472-CDS-P-wetherbeei_contig1167:538..6941683185921.6317472-CDS-P-wetherbeei_contig1167:538..694Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1167 539..694 +
1683185921.640268-CDS-P-wetherbeei_contig1167:927..9741683185921.640268-CDS-P-wetherbeei_contig1167:927..974Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1167 928..974 +
1683185921.647376-CDS-P-wetherbeei_contig1167:1064..11791683185921.647376-CDS-P-wetherbeei_contig1167:1064..1179Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1167 1065..1179 +
1683185921.6546175-CDS-P-wetherbeei_contig1167:1403..15111683185921.6546175-CDS-P-wetherbeei_contig1167:1403..1511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1167 1404..1511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1167.1.1prot_P-wetherbeei_contig1167.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1167 539..1511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1167.1.1

>prot_P-wetherbeei_contig1167.1.1 ID=prot_P-wetherbeei_contig1167.1.1|Name=mRNA_P-wetherbeei_contig1167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
DVNALQAATAALTNLAALHERNAAALVAAGGVTTLAAVLDSPRTEDLLNL
DQVDEIHANAAEALANATADVHGSAVAAAIAARAAEQLHDAGLRQLVLLC
GSRNLQVRRHMALVLGNVAQRDDHRAAVGRCGGVEALITLCE
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mRNA from alignment at P-wetherbeei_contig1167:539..1512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1167.1.1 ID=mRNA_P-wetherbeei_contig1167.1.1|Name=mRNA_P-wetherbeei_contig1167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=974bp|location=Sequence derived from alignment at P-wetherbeei_contig1167:539..1512+ (Phaeothamnion wetherbeei SAG_119_79)
GACGTCAACGCGCTGCAGGCGGCAACGGCGGCGCTGACGAACCTGGCGGC
GCTGCACGAGCGCAACGCGGCAGCGCTGGTGGCAGCGGGCGGCGTGACGA
CACTGGCGGCGGTGCTCGACAGCCCGCGGACGGAAGATCTTCTCAACCTC
GACCAGGTAACGTAGTGTGGGGCAAAAACACAAAGCGAGCGCACTTTTAT
TCTTTCATGTGTTTTCGAGTCGTCGCTTTCTCATTTGCGCAAACGTCTTA
CGGTCGGAGCTCCCTGAATGAAGGCCGCACTCGGCGACTCTCTTGATGTG
CGTAAACGCTTGAGACCATCGGAACGGCTGGAACCGTGGACTGAAAATTA
TTGCGTTTCCTTTTTCTGAATTCCCTCACTGTCCGTCAGGTGGACGAGAT
CCACGCCAACGCCGCAGAGGCGCTGGCAAATGCAACGTCAGGCTGGGGCG
GGGAAGCCGGAGAGAGTGGCGACGACGGTTATGGCAGCAACGGATACGGC
GACGGCGCCAGCAGTGGCGGCGAGAGTGCTGACGTGCATGGTTCTGCGGT
GGCGGCCGCCATCGCGGCGCGCGCGGCGGAGCAGCTCCACGACGCCGGGC
TGCGGCAACTGGTCTTGCTCTGCGGCTCTCGCAACCTCCAAGTATGACTC
GTCAGAAAACCAATTCCCAAACAACGGCAGCGTCTTCCCTTTGGGTTTTC
TCTGCTAGGCCGCGGTCGCTGCCGCCGCCGCCGTTTCGACGCACCCCCAC
TTCTATACCTGCTTATTCCCCCGGTCGAATCGACCGGTTGACTGACGTCA
TCCCCTTCCCCAATGCGATTGACTACATTCCCCGCTCCCTTCAAATGCGA
CATATCCAAATTCAGGTTCGCCGACACATGGCGCTGGTCCTTGGGAACGT
GGCCCAACGGGATGACCACCGCGCCGCCGTTGGCCGCTGCGGCGGCGTCG
AGGCGCTCATCACCCTCTGCGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1167:539..1512+

>mRNA_P-wetherbeei_contig1167.1.1 ID=mRNA_P-wetherbeei_contig1167.1.1|Name=mRNA_P-wetherbeei_contig1167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig1167:539..1512+ (Phaeothamnion wetherbeei SAG_119_79)
GACGTCAACGCGCTGCAGGCGGCAACGGCGGCGCTGACGAACCTGGCGGC
GCTGCACGAGCGCAACGCGGCAGCGCTGGTGGCAGCGGGCGGCGTGACGA
CACTGGCGGCGGTGCTCGACAGCCCGCGGACGGAAGATCTTCTCAACCTC
GACCAGGTGGACGAGATCCACGCCAACGCCGCAGAGGCGCTGGCAAATGC
AACTGCTGACGTGCATGGTTCTGCGGTGGCGGCCGCCATCGCGGCGCGCG
CGGCGGAGCAGCTCCACGACGCCGGGCTGCGGCAACTGGTCTTGCTCTGC
GGCTCTCGCAACCTCCAAGTTCGCCGACACATGGCGCTGGTCCTTGGGAA
CGTGGCCCAACGGGATGACCACCGCGCCGCCGTTGGCCGCTGCGGCGGCG
TCGAGGCGCTCATCACCCTCTGCGAG
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