mRNA_P-wetherbeei_contig11311.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11311.1.1
Unique NamemRNA_P-wetherbeei_contig11311.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 4.450e-34
Identity = 68/129 (52.71%), Postives = 93/129 (72.09%), Query Frame = 1 
Query:   25 VRQGFSDEFLDKAYNEFKDKVLCAKPNYCLVSPALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKV--DPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDVIKNNAGNGNDGGNSDDDF 405
            +  GF+DE L+  + E K+  +  +P Y  V+ +L PDVW+AP  VWEV+ ADLS SPVH AA+GK+  +P++GISIRFPRLLRER  +DKDP QATT+D+I+  Y+ QDV+K+NA  G     +DDD+
Sbjct:  915 IGTGFTDEILNSFWEELKEHTVEQRPRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAAIGKIAQEPDRGISIRFPRLLRER--EDKDPEQATTSDQILDMYEGQDVVKSNAAGGQANNAADDDW 1041
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: A0A0B7N1E0_9FUNG (DNA ligase n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N1E0_9FUNG)

HSP 1 Score: 122 bits (307), Expect = 8.770e-30
Identity = 66/118 (55.93%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:   25 VRQGFSDEFLDKAYNEFKDKVLCA-KPNYCLVSPALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDVIKNNAGNG 375
            +  GFSDE L   Y+  K+ V+ A KP YCL   A+ PDVW AP  VWEV+ ADLSVSP +MA VG+VDPNKGIS+RFPR +R R  DDKDP  ATT++++  FY  Q    N  GNG
Sbjct:  670 IGTGFSDENLQLFYDTLKNHVIDAPKPYYCLGENAVKPDVWFAPSQVWEVKSADLSVSPRYMAGVGRVDPNKGISLRFPRFIRVR--DDKDPENATTSEQVSEFYFDQ---ANQQGNG 782
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: A0A812ZKQ6_9DINO (Lig1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZKQ6_9DINO)

HSP 1 Score: 115 bits (288), Expect = 1.110e-29
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 1 
Query:   25 VRQGFSDEFLDKAYNEFKD-KVLCAKPNYCLVSP-ALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDVIKNNAGNGNDGGN--SDDDFL 408
            V  GFSDEFL +A   FKD + +  KP   +V P +LVPDVW+ P  VWEV+ ADLS+SP + AAVG VDP KGI++RFPR LR R  DDK+P  AT +++I   Y+ Q     N G+G  GG   SDDD L
Sbjct:   74 VGTGFSDEFLAEATKFFKDNEYVREKPPMNVVPPTSLVPDVWLEPAQVWEVKAADLSISPAYRAAVGHVDPAKGIALRFPRFLRIR--DDKNPEHATNSEQIAQMYRDQ----GNVGSGGAGGGHVSDDDML 199
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: A0A2B4RKL2_STYPI (DNA ligase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RKL2_STYPI)

HSP 1 Score: 122 bits (306), Expect = 1.240e-29
Identity = 61/114 (53.51%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:   25 VRQGFSDEFLDKAYNEFKDKVLCAKPNYCLVSPALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDVIKNNA 366
            +  GF+DE LDK Y  FKD+V+     Y      L PD W  P  VWE++ ADLSVSPVH AA+G VDP KGIS+RFPR LR R  DDK P QAT + ++   Y+SQ+ +KNNA
Sbjct:  912 IGTGFTDELLDKHYQFFKDQVIPHPKAYYRYDDNLAPDHWFVPVQVWEIRAADLSVSPVHKAALGLVDPVKGISLRFPRFLRIR--DDKKPEQATDSSQVAEMYRSQETVKNNA 1023
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: A0A3M6TY89_POCDA (DNA ligase n=3 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TY89_POCDA)

HSP 1 Score: 121 bits (304), Expect = 2.310e-29
Identity = 61/114 (53.51%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:   25 VRQGFSDEFLDKAYNEFKDKVLCAKPNYCLVSPALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDVIKNNA 366
            +  GF+DE LDK Y  FKD+V+     Y      L PD W  P  VWE++ ADLSVSPVH AA+G VDP KGIS+RFPR LR R  DDK P QAT + ++   Y+SQ+ +KNNA
Sbjct:  932 IGTGFTDELLDKHYQFFKDQVIPHPKAYYRYDDNLAPDHWFDPVQVWEIRAADLSVSPVHKAALGLVDPVKGISLRFPRFLRIR--DDKKPEQATDSSQVAEMYRSQETVKNNA 1043
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: A0A836CMS0_9STRA (DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.600e-29
Identity = 65/113 (57.52%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:   25 VRQGFSDEFLDKAYNEFKDKVLCAKPNYCLVSPALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDVIKNN 363
            +  GFS+E L       K  V+  KP+Y  V   + PDVW+ P  VWEV+ ADLS SPVH AAVGKVDP +GISIRFPRL+RER  DDK P  AT+AD+I+  Y+SQD IKNN
Sbjct:  521 IGTGFSNERLLALDAMLKAHVIERKPSYFNVGDTIEPDVWLEPCKVWEVRAADLSKSPVHKAAVGKVDPVRGISIRFPRLVRER--DDKAPESATSADQILDMYRSQDCIKNN 631
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: A0A8H7RME4_9FUNG (DNA ligase n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7RME4_9FUNG)

HSP 1 Score: 119 bits (297), Expect = 1.960e-28
Identity = 68/129 (52.71%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:   25 VRQGFSDEFLDKAYNEFKDKVLCA-KPNYCLVSPALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDVIKNNAGNGNDGGNSDDDFL 408
            +  GFSDE L   Y+  KD V+ A K  YCL   A+ PD+W AP  VWEV+ ADLSVSP +MA VG+VDPNKGIS+RFPR +R R  DDKDP  AT++++I  FY  Q    N  GNG    N+D D+ 
Sbjct:  664 IGTGFSDENLQLFYDTLKDHVIDAPKQYYCLGENAVKPDIWFAPTQVWEVKCADLSVSPRYMAGVGRVDPNKGISLRFPRFIRVR--DDKDPDNATSSEQISEFYFDQ---ANQQGNGK---NNDMDYY 784
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: UPI0009E2AB7B (DNA ligase 1-like isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2AB7B)

HSP 1 Score: 118 bits (295), Expect = 3.770e-28
Identity = 58/113 (51.33%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:   25 VRQGFSDEFLDKAYNEFKDKVLCAKPNYCLVSPALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDVIKNN 363
            +  GF+DE LDK +  FKD V+     Y     +L PD W     VWE++ ADLS+SPVH AAVG VDP KGIS+RFPR LR R  DDK P QAT + ++   Y+SQ+ +KNN
Sbjct:  961 IGTGFTDELLDKHHQFFKDHVISQPKAYYRYDDSLAPDHWFDAVQVWEIRAADLSISPVHKAAVGLVDPVKGISLRFPRFLRTR--DDKKPEQATDSSQVAEMYRSQETVKNN 1071
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: S2J5T4_MUCC1 (DNA ligase n=4 Tax=Mucor TaxID=4830 RepID=S2J5T4_MUCC1)

HSP 1 Score: 117 bits (293), Expect = 6.770e-28
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:   25 VRQGFSDEFLDKAYNEFKDKVLCA-KPNYCLVSPALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDVIKNNAGN 372
            +  GFSDE L   Y+  KD V+ A K  YCL   A+ PD+W AP  VWEV+ ADLSVSP +MA VG+VDPNKGIS+RFPR +R R  DDKDP  AT+++++  FY  Q   + N+ N
Sbjct:  665 IGTGFSDENLQLFYDTLKDHVIDAPKQYYCLGENAVKPDIWFAPTQVWEVKCADLSVSPRYMAGVGRVDPNKGISLRFPRFIRVR--DDKDPENATSSEQVSEFYFDQANQQGNSKN 779
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BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Match: A0A835PX35_VANPL (DNA_LIGASE_A3 domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PX35_VANPL)

HSP 1 Score: 115 bits (288), Expect = 7.950e-28
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 1 
Query:    1 PARALHGTVRQ---GFSDEFLDKAYNEFKDKVLCAKPNYCLVSPALVPDVWIAPEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPSQATTADEIVHFYKSQDV 351
            P  A HG  ++   GFS+  L++     + KV+     Y  VS ++ PDVW  P  VWEV+ ADLS+SPVH AA G VDPNKGIS+RFPRL+R R  DDK+P QAT +D++   Y++Q +
Sbjct:  296 PIAAFHGRGKRTGTGFSELQLEERSESLRSKVIARPKPYYRVSDSMNPDVWFEPAEVWEVKAADLSISPVHRAASGVVDPNKGISLRFPRLVRVR--DDKNPEQATNSDQVAEMYRAQKI 413
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11311.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE0_ECTSI4.450e-3452.71DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A0B7N1E0_9FUNG8.770e-3055.93DNA ligase n=1 Tax=Parasitella parasitica TaxID=35... [more]
A0A812ZKQ6_9DINO1.110e-2952.27Lig1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A2B4RKL2_STYPI1.240e-2953.51DNA ligase n=1 Tax=Stylophora pistillata TaxID=504... [more]
A0A3M6TY89_POCDA2.310e-2953.51DNA ligase n=3 Tax=Pocillopora damicornis TaxID=46... [more]
A0A836CMS0_9STRA2.600e-2957.52DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303... [more]
A0A8H7RME4_9FUNG1.960e-2852.71DNA ligase n=1 Tax=Mucor plumbeus TaxID=97098 RepI... [more]
UPI0009E2AB7B3.770e-2851.33DNA ligase 1-like isoform X1 n=2 Tax=Orbicella fav... [more]
S2J5T4_MUCC16.770e-2852.99DNA ligase n=4 Tax=Mucor TaxID=4830 RepID=S2J5T4_M... [more]
A0A835PX35_VANPL7.950e-2848.33DNA_LIGASE_A3 domain-containing protein n=1 Tax=Va... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11311contigP-wetherbeei_contig11311:265..1222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LFE0
Preferred nameLIG1
PFAMsDNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N
Model size411
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461
Exons2
Evalue7.3e-35
EggNOG OGsCOG1793@1|root,KOG0967@2759|Eukaryota
EC6.5.1.1,6.5.1.6,6.5.1.7
DescriptionDNA ligase (ATP) activity
Cds size411
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185906.547106-CDS-P-wetherbeei_contig11311:264..4321683185906.547106-CDS-P-wetherbeei_contig11311:264..432Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11311 265..432 +
1683185906.558252-CDS-P-wetherbeei_contig11311:979..12221683185906.558252-CDS-P-wetherbeei_contig11311:979..1222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11311 980..1222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11311.1.1prot_P-wetherbeei_contig11311.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11311 265..1222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11311.1.1

>prot_P-wetherbeei_contig11311.1.1 ID=prot_P-wetherbeei_contig11311.1.1|Name=mRNA_P-wetherbeei_contig11311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
PARALHGTVRQGFSDEFLDKAYNEFKDKVLCAKPNYCLVSPALVPDVWIA
PEVVWEVQGADLSVSPVHMAAVGKVDPNKGISIRFPRLLRERSPDDKDPS
QATTADEIVHFYKSQDVIKNNAGNGNDGGNSDDDFL*
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mRNA from alignment at P-wetherbeei_contig11311:265..1222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11311.1.1 ID=mRNA_P-wetherbeei_contig11311.1.1|Name=mRNA_P-wetherbeei_contig11311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=958bp|location=Sequence derived from alignment at P-wetherbeei_contig11311:265..1222+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGCGCGTGCACTGCACGGCACGGTACGGCAGGGCTTCTCGGACGAGTT
CCTAGACAAAGCATACAATGAGTTTAAGGACAAGGTGCTGTGCGCCAAGC
CCAACTACTGCCTCGTTTCGCCCGCCCTCGTGCCCGACGTCTGGATCGCT
CCCGAGGTCGTCTGGGAGGTGCGTCTTTTTCGCCAGTCCCTCCGTCCTTC
CGTCCGTTCGTTCGTCCGCCCGTCCCTCCAAACGGCTTCCCAAAGCGTCT
GGTCATGGCCTCAACTCGCCTGTGCTTATGCACTGCTTTCATGAGCAGCA
TACTACCTTGCCGCTGTCACAACGTATTTCGTTTTGTGGTTGCCTTTGCT
TTCGGTTTGGCTTGGGCTCTTTCTGCGTTGGGCGTGCTTAGGCTTTGTCA
AAGACCTGATTTATGCGGTGCCAGAATGAGGAAGGGAGCGGGATCCCGTC
GCTCGGTTTCCCCCCTCTCGGACTCGCTATCCCAAAGGCGGGGCAGCTCA
AACAGCGGGTTTTGTCCGTTTTCCTGCTCATGAGGCCTCTCTCTCATCCA
CGCGATCTTTCCTCTGACGCCACGTTCGCGTTATGCTGCGTCGCTTCGCA
TATCTATTCCTGTCCGAATAAGTCCTCTTATCCTCTCGCGCATGCCATGT
GCATCGTGATGATATCTGTCTGTTTGTCCGCCCACGGCCCGCCCGGCTGT
CTGTCTGCCGTGCAGGTGCAAGGCGCCGACCTGTCAGTGAGCCCGGTGCA
CATGGCGGCGGTAGGCAAGGTGGACCCCAACAAGGGCATCAGCATCCGCT
TCCCGCGCCTGCTGCGGGAGCGCAGCCCGGACGACAAGGACCCGTCGCAG
GCCACCACGGCGGACGAGATCGTGCACTTCTACAAGAGCCAGGACGTCAT
CAAGAACAACGCCGGCAACGGCAACGACGGCGGCAACAGCGACGACGACT
TCCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11311:265..1222+

>mRNA_P-wetherbeei_contig11311.1.1 ID=mRNA_P-wetherbeei_contig11311.1.1|Name=mRNA_P-wetherbeei_contig11311.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig11311:265..1222+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGCGCGTGCACTGCACGGCACGGTACGGCAGGGCTTCTCGGACGAGTT
CCTAGACAAAGCATACAATGAGTTTAAGGACAAGGTGCTGTGCGCCAAGC
CCAACTACTGCCTCGTTTCGCCCGCCCTCGTGCCCGACGTCTGGATCGCT
CCCGAGGTCGTCTGGGAGGTGCAAGGCGCCGACCTGTCAGTGAGCCCGGT
GCACATGGCGGCGGTAGGCAAGGTGGACCCCAACAAGGGCATCAGCATCC
GCTTCCCGCGCCTGCTGCGGGAGCGCAGCCCGGACGACAAGGACCCGTCG
CAGGCCACCACGGCGGACGAGATCGTGCACTTCTACAAGAGCCAGGACGT
CATCAAGAACAACGCCGGCAACGGCAACGACGGCGGCAACAGCGACGACG
ACTTCCTCTGA
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