mRNA_P-wetherbeei_contig11295.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11295.1.1
Unique NamemRNA_P-wetherbeei_contig11295.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: D8LU79_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU79_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.280e-24
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIK 198
            ESNP +M K++ K+G+P  AY FTDVYSTEDWA+AMVPQPV+ V+MLFPIKE TE HR+ E  R++
Sbjct:   26 ESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVR 91
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BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: A0A5A8D9B5_CAFRO (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D9B5_CAFRO)

HSP 1 Score: 96.7 bits (239), Expect = 7.220e-23
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIKAQGKVVS 219
            ESNP +M K+   LGFPTA Y+F +++STEDWA+ M+P PVIAV+ L+PIK+ TE HR AE ERI   G+ VS
Sbjct:   30 ESNPDLMNKYAESLGFPTAMYQFHEIFSTEDWALEMIPAPVIAVVFLYPIKDSTEAHRAAEKERIAKDGQEVS 102
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BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: A0A8K1FQY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQY3_PYTOL)

HSP 1 Score: 93.6 bits (231), Expect = 8.490e-22
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIKAQGKVVS 219
            ESNP +M  +V KLGFPT+ + F DV STEDWA+ MVP+PV+ VLMLFPIK+ TE   K E  RI+  G+VVS
Sbjct:   15 ESNPAVMNTYVEKLGFPTSDFSFCDVLSTEDWALDMVPKPVVGVLMLFPIKKHTEAFAKEEAARIEKDGQVVS 87
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BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: A0A1V9YLF7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YLF7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.490e-22
Identity = 43/74 (58.11%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPT-AAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIKAQGKVVS 219
            ESNP +M +++ ++G P  +A+EF DVYSTEDWA+ MVP+PV+AV+MLFPIK  TE + KAE ERI+  G+ VS
Sbjct:   16 ESNPAVMNEYIKRMGLPADSAFEFCDVYSTEDWALDMVPRPVLAVIMLFPIKAHTEAYAKAEHERIEKNGQAVS 89
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BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: A0A835ZFE8_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.150e-21
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIKAQGKVVS 219
            ESNP +MT+++ +LGF T+ + F DV ST+DWA+ MVPQP +AVLMLFP+K  +E HR  E  RI+ +G+VVS
Sbjct:   19 ESNPDVMTRYIERLGFDTSRHAFVDVLSTDDWALDMVPQPALAVLMLFPVKAASEAHRAEEAARIEREGQVVS 91
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BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: H3H379_PHYRM (Ubiquitin carboxyl-terminal hydrolase n=15 Tax=Phytophthora TaxID=4783 RepID=H3H379_PHYRM)

HSP 1 Score: 92.4 bits (228), Expect = 2.280e-21
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIKAQGKVVS 219
            ESNP +M  +V K+GFPT A+ F DV STE+WA+AMVP PV+AV+MLFPIK  TE   K E +RI+  G+++S
Sbjct:   15 ESNPEVMNAYVEKMGFPTTAFSFCDVLSTEEWALAMVPSPVVAVIMLFPIKPHTEEADKQEAKRIEKDGQIMS 87
[Close]
BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: A0A482URM1_9ARCH (Ubiquitinyl hydrolase 1 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482URM1_9ARCH)

HSP 1 Score: 89.4 bits (220), Expect = 6.440e-21
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIKAQGKVVS 219
            ESNP++M  ++ KLG  T+ + F DV+STEDWA+ MVP+PV+ VL+LFPI E +E HR+ E  RI+ +G++VS
Sbjct:    9 ESNPSVMNAYMEKLGLDTSNFNFHDVFSTEDWALDMVPKPVLGVLLLFPISESSEAHRREEDARIQREGQMVS 81
[Close]
BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: A0A024G9P5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9P5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.670e-20
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIKAQG 207
            ESNP I+  ++ ++GFPTAAY+F DV STE+WA+ MVPQPV AV+ LFPIKE TE + K E +  K+ G
Sbjct:   11 ESNPLILNNYLERMGFPTAAYQFQDVLSTEEWALEMVPQPVAAVIFLFPIKEQTEAYAKEEAQNQKSSG 79
[Close]
BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: K3WN15_GLOUD (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WN15_GLOUD)

HSP 1 Score: 89.0 bits (219), Expect = 5.290e-20
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIKAQGKVVS 219
            ESNP +M  +V ++GFPTA + F DV S EDWA+ MVP PV+ VLMLFPIK  TE   K E E+I   G+VVS
Sbjct:   15 ESNPAVMNTYVEQMGFPTAEFSFCDVLSIEDWALEMVPTPVLGVLMLFPIKAHTEAFAKEEEEKILRDGQVVS 87
[Close]
BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Match: A0A3F2RNT3_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNT3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.920e-20
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 ESNPTIMTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*TEVHRKAEPERIKAQGKVVS 219
            ESNP +M  +V K+GFPT  + F DV STE+WA+ MVP PV+AV+MLFPIK  TE   K E  RI+ +G+ VS
Sbjct:   15 ESNPDVMNNYVEKMGFPTDQFSFCDVLSTEEWALGMVPSPVVAVIMLFPIKPHTEEAAKQEAVRIEREGQTVS 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11295.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU79_ECTSI2.280e-2465.15Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A5A8D9B5_CAFRO7.220e-2358.90Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Cafe... [more]
A0A8K1FQY3_PYTOL8.490e-2260.27Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YLF7_9STRA8.490e-2258.11Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achl... [more]
A0A835ZFE8_9STRA1.150e-2156.16Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
H3H379_PHYRM2.280e-2157.53Ubiquitin carboxyl-terminal hydrolase n=15 Tax=Phy... [more]
A0A482URM1_9ARCH6.440e-2153.42Ubiquitinyl hydrolase 1 n=1 Tax=archaeon TaxID=190... [more]
A0A024G9P5_9STRA1.670e-2057.97Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Albu... [more]
K3WN15_GLOUD5.290e-2057.53Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glob... [more]
A0A3F2RNT3_9STRA6.920e-2056.16Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11295contigP-wetherbeei_contig11295:11..229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LU79
Preferred nameYUH1
PFAMsPeptidase_C12
Model size219
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K05609,ko:K12584
KEGG ReactionR04368
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000338,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010992,GO:0016579,GO:0016787,GO:0019538,GO:0019725,GO:0019783,GO:0019784,GO:0036211,GO:0036459,GO:0042592,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0065007,GO:0065008,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0101005,GO:0140096,GO:1901564
Exons1
Evalue8.4e-18
EggNOG OGsKOG1415@1|root,KOG1415@2759|Eukaryota
Ec32 ortholog descriptionPeptidase C12, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-14_003970.1
EC3.4.19.12,3.6.1.59
Descriptionthiol-dependent ubiquitin-specific protease activity
Cds size141
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.579855-UTR-P-wetherbeei_contig11295:10..701683185905.579855-UTR-P-wetherbeei_contig11295:10..70Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11295 11..70 -
1683185905.603474-UTR-P-wetherbeei_contig11295:211..2291683185905.603474-UTR-P-wetherbeei_contig11295:211..229Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11295 212..229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.5917213-CDS-P-wetherbeei_contig11295:70..2111683185905.5917213-CDS-P-wetherbeei_contig11295:70..211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11295 71..211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11295.1.1prot_P-wetherbeei_contig11295.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11295 71..211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11295.1.1

>prot_P-wetherbeei_contig11295.1.1 ID=prot_P-wetherbeei_contig11295.1.1|Name=mRNA_P-wetherbeei_contig11295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
MTKFVGKLGFPTAAYEFTDVYSTEDWAMAMVPQPVIAVLMLFPIKE*
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mRNA from alignment at P-wetherbeei_contig11295:11..229-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11295.1.1 ID=mRNA_P-wetherbeei_contig11295.1.1|Name=mRNA_P-wetherbeei_contig11295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig11295:11..229- (Phaeothamnion wetherbeei SAG_119_79)
GAGTCCAACCCGACGATCATGACCAAGTTCGTCGGAAAGCTCGGCTTCCC
CACTGCCGCATACGAATTCACGGATGTCTATAGCACGGAGGACTGGGCAA
TGGCGATGGTCCCGCAGCCGGTGATCGCCGTGCTGATGCTCTTTCCTATC
AAGGAGTAGACGGAGGTCCACCGAAAGGCTGAGCCGGAGCGCATAAAGGC
GCAGGGAAAAGTTGTAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11295:11..229-

>mRNA_P-wetherbeei_contig11295.1.1 ID=mRNA_P-wetherbeei_contig11295.1.1|Name=mRNA_P-wetherbeei_contig11295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig11295:11..229- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAAGTTCGTCGGAAAGCTCGGCTTCCCCACTGCCGCATACGAATT
CACGGATGTCTATAGCACGGAGGACTGGGCAATGGCGATGGTCCCGCAGC
CGGTGATCGCCGTGCTGATGCTCTTTCCTATCAAGGAGTAG
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