mRNA_P-wetherbeei_contig1126.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1126.1.1
Unique NamemRNA_P-wetherbeei_contig1126.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1126.1.1 vs. uniprot
Match: D7FV55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV55_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.630e-27
Identity = 111/289 (38.41%), Postives = 130/289 (44.98%), Query Frame = 1 
Query:    1 MAMPVRSSRNTGFGTANPTPAAVGPGSYEPSSRLTYHAKPVLRAFLSSAPRDFQRAAPAGVEATPGP--GSYARAGTPSDSHRYGAGSAAFASRAPRTGALDNGGG--GVGGAVPSPGPGDY--------YSPXXXXXXXXXXXXXXXXASRVNPPAIPRREQSHGYCQDAAGRLAPLPAAGCFHTGERGDTVGPGAYTPSDYFRRSGGACARMLAGPRRTVFDEAWAAGAAVPGPGDYQPALEP---LLRPGGGPASAPFRSAVPKMAFAAADGPXXGEYDIAAAVGM 822
            MAMPVRS+R T FG   PTP  +GPGSY   S  T   +P L AF SS  R +Q  +            GS   A T +D       S  F SRAPR      G    G    V  PGPG Y        +                  A R NPP++PRREQS GY  D  G+L  LPA     TG   D+ GPG Y   D    +G   A+   G R+T+FD   AA    PGPGDY P LEP   L  PG    SAPF S VPK       GP  G+Y  +  +G+
Sbjct:    1 MAMPVRSARTTEFGEKAPTPVTIGPGSYLGPSEPT-KTRPSLAAFASSQHRSWQGKSXXXXXXXXXXXGGSIPAALTENDIRP----SYCFESRAPRLAPQYPGSTIFGRSTVVQVPGPGTYETDGAPGQHGHRELKWSGPRSKTVPGVAKRFNPPSVPRREQSFGYNVDPHGKLLALPAPSSTRTGLLKDSAGPGDYDTQDNSWWAGVGAAKFSKGARKTIFDGDCAAKDRRPGPGDYNPKLEPRYHLDMPG----SAPFMSGVPKGDNRLHGGPGPGQYVYSTPLGV 280
[Close]
BLAST of mRNA_P-wetherbeei_contig1126.1.1 vs. uniprot
Match: A0A6H5KR81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR81_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.700e-14
Identity = 78/215 (36.28%), Postives = 103/215 (47.91%), Query Frame = 1 
Query:  433 AIPRREQSHGYCQDAAGRLAPLPAAGCFHTGERGDTVGPGAYTPSDYFRRSGGACARMLAGPRRTVFDEAWAAGAAVPGPGDYQPALEP-----LLRPGGGPASAPFRSAVPKMAFAAADGPXXGEYDIAAAVGMLPSAAVAAGTALGVDAAAPRHGGFGSTTEQRGVSTDSAAAAATPGPGHYAGAAQ--SSFAPRQRKTLREEPVGFYSTAER 1056
            ++ R+EQS GY  D  G+L  LPA     TG   D+ GPG Y   D    +G    +   G R+T+FD   AA    PGPGDY P LEP     +L       SAPF S VPK       GP  G+Y  +  +G+     ++AG     ++ A R  G    ++Q   S   + +   PGPG Y G+ Q  SSF     KTL +E +GF ST  R
Sbjct:   21 SLGRKEQSFGYNVDPHGKLLALPAPSSTRTGLLKDSAGPGDYDTQDNNWWAGVGVVKFSKGARKTIFDGDCAAKDRRPGPGDYNPKLEPRYHLDML------GSAPFMSGVPKGDNRLHGGPGPGQYVYSTPLGVN----ISAGNVPNFNSCAKR--GAWLRSDQYPYSEPESGS--FPGPGAY-GSLQDNSSFNKTAPKTLTDEKIGFSSTGRR 220
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1126.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV55_ECTSI2.630e-2738.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR81_9PHAE1.700e-1436.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1126contigP-wetherbeei_contig1126:2748..4095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FV55
PFAMsSHIPPO-rpt
Model size1065
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.31e-28
EggNOG OGs28M4G@1|root,2QTMC@2759|Eukaryota
DescriptionSperm-tail PG-rich repeat
Cds size1065
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185904.4531517-CDS-P-wetherbeei_contig1126:2747..29941683185904.4531517-CDS-P-wetherbeei_contig1126:2747..2994Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1126 2748..2994 +
1683185904.463904-CDS-P-wetherbeei_contig1126:3184..33321683185904.463904-CDS-P-wetherbeei_contig1126:3184..3332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1126 3185..3332 +
1683185904.4731472-CDS-P-wetherbeei_contig1126:3425..40951683185904.4731472-CDS-P-wetherbeei_contig1126:3425..4095Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1126 3426..4095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1126.1.1prot_P-wetherbeei_contig1126.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1126 2748..4095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1126.1.1

>prot_P-wetherbeei_contig1126.1.1 ID=prot_P-wetherbeei_contig1126.1.1|Name=mRNA_P-wetherbeei_contig1126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=355bp
MAMPVRSSRNTGFGTANPTPAAVGPGSYEPSSRLTYHAKPVLRAFLSSAP
RDFQRAAPAGVEATPGPGSYARAGTPSDSHRYGAGSAAFASRAPRTGALD
NGGGGVGGAVPSPGPGDYYSPPPMGTPPARRRCGGGAASRVNPPAIPRRE
QSHGYCQDAAGRLAPLPAAGCFHTGERGDTVGPGAYTPSDYFRRSGGACA
RMLAGPRRTVFDEAWAAGAAVPGPGDYQPALEPLLRPGGGPASAPFRSAV
PKMAFAAADGPGPGEYDIAAAVGMLPSAAVAAGTALGVDAAAPRHGGFGS
TTEQRGVSTDSAAAAATPGPGHYAGAAQSSFAPRQRKTLREEPVGFYSTA
ERPCL
back to top

mRNA from alignment at P-wetherbeei_contig1126:2748..4095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1126.1.1 ID=mRNA_P-wetherbeei_contig1126.1.1|Name=mRNA_P-wetherbeei_contig1126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1348bp|location=Sequence derived from alignment at P-wetherbeei_contig1126:2748..4095+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAATGCCTGTGCGTTCCTCGCGCAACACAGGCTTCGGCACTGCCAA
CCCGACCCCTGCCGCCGTCGGGCCCGGGAGTTACGAGCCGTCGTCGCGAC
TCACCTATCACGCAAAGCCCGTCCTACGCGCTTTCCTTAGCAGCGCGCCG
CGGGACTTTCAGCGGGCAGCGCCTGCGGGAGTAGAGGCGACGCCTGGCCC
GGGATCGTATGCTCGCGCAGGCACACCCTCGGACAGCCATCGCTACGGTC
AGTAGTTTCTTTAACTCAACAGAGAGCGCTCTGGCTTGCTTCTTACAAGG
GTAGATATATCACCACTTGGCGGCACTGGCTACTGTTAGATTAGCAGGCT
GCTATCTGTTATTGTGCTATCCATTCCCTCTCAGTCTTTCCCTGTTGTCT
CTGAGGCCTCAGCACTCTTGACCACCACGACTGCCAGGGGCGGGATCAGC
AGCTTTCGCCTCTCGAGCACCTCGCACTGGCGCTCTCGACAATGGTGGCG
GCGGCGTTGGCGGTGCCGTCCCCTCGCCCGGTCCTGGAGACTATTATTCC
CCGCCGCCGATGGGCACACCGCCGGCACGACGACGGTCCGCCCGATCCGC
GCCGACCGCTACAGCGGCGGCAGCAGCAGCAGCCGCCCAATACCAAAGAA
GACGCTGCGACACCCGCAGCGGCGGCAGCTGTGGCGGCGGCGCAGCGTCA
CGTGTCAATCCGCCGGCAATCCCGCGGCGGGAGCAAAGCCACGGCTACTG
CCAGGATGCCGCGGGCCGCCTGGCGCCCTTGCCGGCGGCGGGGTGCTTCC
ACACGGGGGAGCGGGGCGACACGGTCGGCCCCGGCGCGTACACGCCCAGC
GATTACTTCCGGCGGAGCGGCGGCGCCTGCGCCCGGATGCTGGCGGGGCC
GCGTCGGACAGTCTTCGACGAAGCGTGGGCGGCGGGGGCGGCGGTACCCG
GTCCGGGCGACTACCAGCCGGCATTGGAGCCGTTGCTGCGGCCCGGCGGC
GGGCCGGCGTCGGCTCCGTTCCGATCGGCGGTGCCCAAGATGGCGTTTGC
TGCGGCCGATGGGCCCGGCCCTGGCGAGTACGACATCGCTGCGGCCGTTG
GCATGTTGCCATCGGCGGCCGTAGCGGCGGGCACCGCCCTGGGGGTGGAC
GCCGCAGCGCCGAGGCACGGCGGTTTTGGTAGCACAACAGAGCAAAGAGG
AGTTTCCACAGACTCCGCCGCCGCGGCGGCGACGCCGGGCCCGGGGCATT
ACGCGGGAGCAGCGCAGTCCAGCTTTGCTCCGCGGCAACGCAAGACGCTC
CGAGAAGAGCCGGTGGGGTTTTACTCCACGGCGGAGCGGCCTTGCCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1126:2748..4095+

>mRNA_P-wetherbeei_contig1126.1.1 ID=mRNA_P-wetherbeei_contig1126.1.1|Name=mRNA_P-wetherbeei_contig1126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1065bp|location=Sequence derived from alignment at P-wetherbeei_contig1126:2748..4095+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAATGCCTGTGCGTTCCTCGCGCAACACAGGCTTCGGCACTGCCAA
CCCGACCCCTGCCGCCGTCGGGCCCGGGAGTTACGAGCCGTCGTCGCGAC
TCACCTATCACGCAAAGCCCGTCCTACGCGCTTTCCTTAGCAGCGCGCCG
CGGGACTTTCAGCGGGCAGCGCCTGCGGGAGTAGAGGCGACGCCTGGCCC
GGGATCGTATGCTCGCGCAGGCACACCCTCGGACAGCCATCGCTACGGGG
CGGGATCAGCAGCTTTCGCCTCTCGAGCACCTCGCACTGGCGCTCTCGAC
AATGGTGGCGGCGGCGTTGGCGGTGCCGTCCCCTCGCCCGGTCCTGGAGA
CTATTATTCCCCGCCGCCGATGGGCACACCGCCGGCACGACGACGCTGTG
GCGGCGGCGCAGCGTCACGTGTCAATCCGCCGGCAATCCCGCGGCGGGAG
CAAAGCCACGGCTACTGCCAGGATGCCGCGGGCCGCCTGGCGCCCTTGCC
GGCGGCGGGGTGCTTCCACACGGGGGAGCGGGGCGACACGGTCGGCCCCG
GCGCGTACACGCCCAGCGATTACTTCCGGCGGAGCGGCGGCGCCTGCGCC
CGGATGCTGGCGGGGCCGCGTCGGACAGTCTTCGACGAAGCGTGGGCGGC
GGGGGCGGCGGTACCCGGTCCGGGCGACTACCAGCCGGCATTGGAGCCGT
TGCTGCGGCCCGGCGGCGGGCCGGCGTCGGCTCCGTTCCGATCGGCGGTG
CCCAAGATGGCGTTTGCTGCGGCCGATGGGCCCGGCCCTGGCGAGTACGA
CATCGCTGCGGCCGTTGGCATGTTGCCATCGGCGGCCGTAGCGGCGGGCA
CCGCCCTGGGGGTGGACGCCGCAGCGCCGAGGCACGGCGGTTTTGGTAGC
ACAACAGAGCAAAGAGGAGTTTCCACAGACTCCGCCGCCGCGGCGGCGAC
GCCGGGCCCGGGGCATTACGCGGGAGCAGCGCAGTCCAGCTTTGCTCCGC
GGCAACGCAAGACGCTCCGAGAAGAGCCGGTGGGGTTTTACTCCACGGCG
GAGCGGCCTTGCCTC
back to top