mRNA_P-wetherbeei_contig1124.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1124.2.1
Unique NamemRNA_P-wetherbeei_contig1124.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1124.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1124contigP-wetherbeei_contig1124:2704..3183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size482
Hectar predicted targeting categoryother localisation
Exons1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185903.7773998-UTR-P-wetherbeei_contig1124:2703..27301683185903.7773998-UTR-P-wetherbeei_contig1124:2703..2730Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1124 2704..2730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185903.7877278-CDS-P-wetherbeei_contig1124:2730..31831683185903.7877278-CDS-P-wetherbeei_contig1124:2730..3183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1124 2731..3183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1124.2.1prot_P-wetherbeei_contig1124.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1124 2731..3183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1124.2.1

>prot_P-wetherbeei_contig1124.2.1 ID=prot_P-wetherbeei_contig1124.2.1|Name=mRNA_P-wetherbeei_contig1124.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MLTPLQEIGFSESKVSTRPTPPTSQVALPLRPGQVSRPHRRADTKALWRE
AGCEACAGNRRQNCADRGAEARNIDLRQRGGGLQRRRRRRRRLPSAAALA
AGADGGASAARGAWRSASAPTETKAVTTAAVTSTTADAMGATPRGLLDGR
L
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mRNA from alignment at P-wetherbeei_contig1124:2704..3183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1124.2.1 ID=mRNA_P-wetherbeei_contig1124.2.1|Name=mRNA_P-wetherbeei_contig1124.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig1124:2704..3183+ (Phaeothamnion wetherbeei SAG_119_79)
GGTAGACAACACGAGCTGTGCGCGCGAATGCTGACGCCGCTCCAGGAAAT
CGGCTTCTCCGAATCCAAGGTTTCCACCCGGCCGACGCCACCGACGTCGC
AGGTCGCGCTGCCGCTCCGGCCTGGCCAAGTTTCTCGGCCGCACCGGCGG
GCAGACACCAAAGCTCTTTGGCGGGAGGCTGGCTGCGAGGCCTGCGCCGG
CAATCGGCGGCAAAACTGCGCTGATCGTGGTGCGGAGGCCCGGAACATCG
ATCTGCGTCAGCGTGGTGGTGGTTTGCAGCGGCGGCGGCGGCGGCGGCGA
CGGCTGCCTTCGGCGGCCGCGTTGGCGGCAGGGGCGGATGGCGGCGCTTC
TGCGGCACGGGGCGCATGGCGATCAGCGTCGGCGCCCACAGAAACGAAAG
CGGTGACGACTGCAGCGGTGACCTCTACCACGGCGGACGCGATGGGTGCT
ACGCCTCGCGGGCTTCTGGACGGCAGGCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1124:2704..3183+

>mRNA_P-wetherbeei_contig1124.2.1 ID=mRNA_P-wetherbeei_contig1124.2.1|Name=mRNA_P-wetherbeei_contig1124.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig1124:2704..3183+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACGCCGCTCCAGGAAATCGGCTTCTCCGAATCCAAGGTTTCCAC
CCGGCCGACGCCACCGACGTCGCAGGTCGCGCTGCCGCTCCGGCCTGGCC
AAGTTTCTCGGCCGCACCGGCGGGCAGACACCAAAGCTCTTTGGCGGGAG
GCTGGCTGCGAGGCCTGCGCCGGCAATCGGCGGCAAAACTGCGCTGATCG
TGGTGCGGAGGCCCGGAACATCGATCTGCGTCAGCGTGGTGGTGGTTTGC
AGCGGCGGCGGCGGCGGCGGCGACGGCTGCCTTCGGCGGCCGCGTTGGCG
GCAGGGGCGGATGGCGGCGCTTCTGCGGCACGGGGCGCATGGCGATCAGC
GTCGGCGCCCACAGAAACGAAAGCGGTGACGACTGCAGCGGTGACCTCTA
CCACGGCGGACGCGATGGGTGCTACGCCTCGCGGGCTTCTGGACGGCAGG
CTA
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