mRNA_P-wetherbeei_contig11200.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11200.1.1
Unique NamemRNA_P-wetherbeei_contig11200.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11200.1.1 vs. uniprot
Match: UPI0012FD67C6 (hypothetical protein n=1 Tax=Burkholderia pyrrocinia TaxID=60550 RepID=UPI0012FD67C6)

HSP 1 Score: 58.2 bits (139), Expect = 4.640e-7
Identity = 48/176 (27.27%), Postives = 79/176 (44.89%), Query Frame = 1 
Query:   43 FWAWFADNRERFETLLAGCKSPEQGVTAEFQAFMDGLTTALHR-YDTRIFPFCGQTHEGVFEFIITAEGNVAAFDSVYRLVAEAPKLGTWNFIPLKPRQT-----FDGIARGPTSQLDPSTLRYALGGDFGKPYIILIAPELDQEHFEEQQFLAAMLMDTLLGEEDFARRVEGVEL 552
            FW WF  N    ET L   +  ++ +        D L+  +H+ Y +  F F G    G  EF+I+A+GN AAF  V  L + AP L  W  I  + R+      F+G+       +  S++   +  +  K  + +  P       +  + +A +L+D  LGE D   RV G+++
Sbjct:   30 FWKWFQKN----ETSLFDFERDQERI-------FDQLSVEMHKVYPSLTFEF-GPKQNGQREFVISADGNRAAFPKVDSLASSAPALARWKVIKFRTRREPLDVQFNGVL------VKASSVSVDIRPEGEKVALTVFIPGYLASSRQTFEGIAFLLLDQALGEFDVETRVGGIDV 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11200.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0012FD67C64.640e-727.27hypothetical protein n=1 Tax=Burkholderia pyrrocin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11200contigP-wetherbeei_contig11200:314..871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog665959.HMPREF1013_00660
Model size558
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.7e-10
EggNOG OGs28I9E@1|root,2Z8C2@2|Bacteria,1VF3G@1239|Firmicutes,4HQE5@91061|Bacilli,1ZKZ2@1386|Bacillus
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185901.9396338-CDS-P-wetherbeei_contig11200:313..8711683185901.9396338-CDS-P-wetherbeei_contig11200:313..871Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11200 314..871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11200.1.1prot_P-wetherbeei_contig11200.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11200 314..871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11200.1.1

>prot_P-wetherbeei_contig11200.1.1 ID=prot_P-wetherbeei_contig11200.1.1|Name=mRNA_P-wetherbeei_contig11200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MLQLFTSKTSKAKKFWAWFADNRERFETLLAGCKSPEQGVTAEFQAFMDG
LTTALHRYDTRIFPFCGQTHEGVFEFIITAEGNVAAFDSVYRLVAEAPKL
GTWNFIPLKPRQTFDGIARGPTSQLDPSTLRYALGGDFGKPYIILIAPEL
DQEHFEEQQFLAAMLMDTLLGEEDFARRVEGVELVS
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mRNA from alignment at P-wetherbeei_contig11200:314..871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11200.1.1 ID=mRNA_P-wetherbeei_contig11200.1.1|Name=mRNA_P-wetherbeei_contig11200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig11200:314..871+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTACAACTTTTCACCAGCAAGACTTCGAAGGCGAAGAAGTTCTGGGC
CTGGTTCGCCGACAATCGCGAGCGCTTCGAGACGTTGCTGGCCGGGTGCA
AGTCGCCGGAACAGGGCGTAACAGCCGAGTTTCAGGCATTCATGGACGGC
CTGACGACGGCGCTCCATCGTTATGACACGCGCATTTTCCCCTTCTGCGG
ACAGACACACGAGGGCGTATTCGAGTTCATCATAACCGCCGAAGGCAACG
TGGCGGCCTTCGACAGCGTTTACCGGCTGGTTGCAGAGGCGCCCAAGCTC
GGGACGTGGAACTTCATTCCGCTCAAACCACGTCAGACATTCGACGGTAT
TGCGAGGGGCCCAACTTCGCAGCTCGATCCGAGCACTTTGCGCTATGCGC
TGGGCGGCGACTTCGGCAAGCCATACATCATCCTCATAGCGCCCGAACTC
GACCAGGAGCACTTCGAAGAGCAGCAGTTCCTGGCGGCGATGTTGATGGA
CACGCTGCTTGGTGAAGAGGACTTCGCCCGTCGCGTCGAGGGCGTAGAGC
TTGTCTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11200:314..871+

>mRNA_P-wetherbeei_contig11200.1.1 ID=mRNA_P-wetherbeei_contig11200.1.1|Name=mRNA_P-wetherbeei_contig11200.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig11200:314..871+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTACAACTTTTCACCAGCAAGACTTCGAAGGCGAAGAAGTTCTGGGC
CTGGTTCGCCGACAATCGCGAGCGCTTCGAGACGTTGCTGGCCGGGTGCA
AGTCGCCGGAACAGGGCGTAACAGCCGAGTTTCAGGCATTCATGGACGGC
CTGACGACGGCGCTCCATCGTTATGACACGCGCATTTTCCCCTTCTGCGG
ACAGACACACGAGGGCGTATTCGAGTTCATCATAACCGCCGAAGGCAACG
TGGCGGCCTTCGACAGCGTTTACCGGCTGGTTGCAGAGGCGCCCAAGCTC
GGGACGTGGAACTTCATTCCGCTCAAACCACGTCAGACATTCGACGGTAT
TGCGAGGGGCCCAACTTCGCAGCTCGATCCGAGCACTTTGCGCTATGCGC
TGGGCGGCGACTTCGGCAAGCCATACATCATCCTCATAGCGCCCGAACTC
GACCAGGAGCACTTCGAAGAGCAGCAGTTCCTGGCGGCGATGTTGATGGA
CACGCTGCTTGGTGAAGAGGACTTCGCCCGTCGCGTCGAGGGCGTAGAGC
TTGTCTCA
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