mRNA_P-wetherbeei_contig11149.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11149.1.1
Unique NamemRNA_P-wetherbeei_contig11149.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11149.1.1 vs. uniprot
Match: A0A1Q3P933_9BACT (Uncharacterized protein n=1 Tax=Dyadobacter sp. 50-39 TaxID=1895756 RepID=A0A1Q3P933_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.320e-6
Identity = 28/54 (51.85%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   19 LLATVAIFLISLSVYSQVVSSDSLDVLKARKEMLGISKKLNACRIELAEKENQI 180
            +LA + ++LISLSV +QVVS DS+++LK +KE++ +SK+LN  ++ELA+ ENQ+
Sbjct:    6 ILAVLGLWLISLSVSAQVVSKDSINMLKDQKEVIEVSKRLNERKLELAKLENQL 59
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BLAST of mRNA_P-wetherbeei_contig11149.1.1 vs. uniprot
Match: UPI001F1D5579 (hypothetical protein n=1 Tax=Dyadobacter sp. CY261 TaxID=2907203 RepID=UPI001F1D5579)

HSP 1 Score: 54.3 bits (129), Expect = 2.490e-6
Identity = 28/51 (54.90%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   31 VAIFLISLSVYSQVVSSDSLDVLKARKEMLGISKKLNACRIELAEKENQIQ 183
            V + LISLSV +QVVS DS+++LK +KE++ +SK+LN  ++ELA+ ENQ+Q
Sbjct:   10 VVLLLISLSVSAQVVSKDSINMLKDQKEVIEVSKRLNERKLELAKLENQVQ 60
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BLAST of mRNA_P-wetherbeei_contig11149.1.1 vs. uniprot
Match: A0A1H6QIM6_9BACT (Uncharacterized protein n=2 Tax=Dyadobacter TaxID=120831 RepID=A0A1H6QIM6_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 3.130e-6
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   28 TVAIFLISLSVYSQVVSSDSLDVLKARKEMLGISKKLNACRIELAEKENQI 180
            T+ I LISLS+ +QVVS DSL++LK +KE L +SK+LN  ++ELA+ ENQ+
Sbjct:    9 TLGIMLISLSLSAQVVSKDSLNMLKQQKESLEVSKRLNERKLELAKLENQV 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1Q3P933_9BACT2.320e-651.85Uncharacterized protein n=1 Tax=Dyadobacter sp. 50... [more]
UPI001F1D55792.490e-654.90hypothetical protein n=1 Tax=Dyadobacter sp. CY261... [more]
A0A1H6QIM6_9BACT3.130e-656.86Uncharacterized protein n=2 Tax=Dyadobacter TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11149contigP-wetherbeei_contig11149:368..826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size459
Hectar predicted targeting categorysignal peptide
Exons1
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185899.5884204-UTR-P-wetherbeei_contig11149:367..3701683185899.5884204-UTR-P-wetherbeei_contig11149:367..370Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11149 368..370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185899.6058445-CDS-P-wetherbeei_contig11149:370..8261683185899.6058445-CDS-P-wetherbeei_contig11149:370..826Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11149 371..826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11149.1.1prot_P-wetherbeei_contig11149.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11149 371..826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11149.1.1

>prot_P-wetherbeei_contig11149.1.1 ID=prot_P-wetherbeei_contig11149.1.1|Name=mRNA_P-wetherbeei_contig11149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MIYSRLLATVAIFLISLSVYSQVVSSDSLDVLKARKEMLGISKKLNACRI
ELAEKENQIQEKTNDVNNAADKAQRSADENKTAAESLEQDPQDRKLARRA
KKAARQAHRDAKRARKAQDRLERLNKDIESLKNEVADYEAKLRELPTAGG
K*
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mRNA from alignment at P-wetherbeei_contig11149:368..826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11149.1.1 ID=mRNA_P-wetherbeei_contig11149.1.1|Name=mRNA_P-wetherbeei_contig11149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig11149:368..826+ (Phaeothamnion wetherbeei SAG_119_79)
GTAATGATTTATAGTAGATTGCTCGCTACGGTAGCGATATTTTTGATTTC
GTTATCTGTCTATTCGCAGGTTGTTTCCAGCGACTCCCTCGATGTTTTGA
AGGCCCGGAAGGAAATGCTGGGTATCAGCAAAAAGCTTAATGCGTGCCGG
ATAGAACTCGCCGAGAAGGAAAACCAGATACAGGAAAAAACCAATGATGT
AAACAATGCGGCCGACAAAGCGCAGCGATCGGCGGACGAGAATAAAACGG
CCGCCGAATCACTGGAACAGGATCCGCAAGATCGCAAACTGGCCCGTCGG
GCAAAAAAGGCCGCCCGCCAGGCACATCGCGACGCAAAAAGGGCGAGAAA
GGCCCAGGACAGGCTCGAAAGACTTAACAAGGACATCGAATCGCTGAAAA
ACGAGGTTGCCGATTATGAAGCGAAGCTCCGGGAATTGCCGACAGCAGGT
GGTAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11149:368..826+

>mRNA_P-wetherbeei_contig11149.1.1 ID=mRNA_P-wetherbeei_contig11149.1.1|Name=mRNA_P-wetherbeei_contig11149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig11149:368..826+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTTATAGTAGATTGCTCGCTACGGTAGCGATATTTTTGATTTCGTT
ATCTGTCTATTCGCAGGTTGTTTCCAGCGACTCCCTCGATGTTTTGAAGG
CCCGGAAGGAAATGCTGGGTATCAGCAAAAAGCTTAATGCGTGCCGGATA
GAACTCGCCGAGAAGGAAAACCAGATACAGGAAAAAACCAATGATGTAAA
CAATGCGGCCGACAAAGCGCAGCGATCGGCGGACGAGAATAAAACGGCCG
CCGAATCACTGGAACAGGATCCGCAAGATCGCAAACTGGCCCGTCGGGCA
AAAAAGGCCGCCCGCCAGGCACATCGCGACGCAAAAAGGGCGAGAAAGGC
CCAGGACAGGCTCGAAAGACTTAACAAGGACATCGAATCGCTGAAAAACG
AGGTTGCCGATTATGAAGCGAAGCTCCGGGAATTGCCGACAGCAGGTGGT
AAGTAA
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