mRNA_P-wetherbeei_contig10990.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10990.1.2
Unique NamemRNA_P-wetherbeei_contig10990.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: A0A6H5JII2_9PHAE (Cytosolic Fe-S cluster assembly factor NUBP1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JII2_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.440e-52
Identity = 93/160 (58.13%), Postives = 119/160 (74.38%), Query Frame = 3
Query:  252 LSF*QYLKGVKVDGAVLVTTPQEVAMADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAFTD-ASGQDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVVDVILQATQD 728
            +S  +YL G  VDGAV+VTTPQEVAMADVRKE++FC+KTG++VLGVVENMS + +P+ E  F D A+G+D T + RA+L EK P+ L  + +  VF +F  GPR MAE+ GVP+LG IP+DPNLLKACEEG +F   Y  SPAAKPF  +V  ++ AT D
Sbjct:  202 MSVVKYLGGCNVDGAVVVTTPQEVAMADVRKELSFCRKTGLNVLGVVENMSGLTVPVSELLFVDKATGEDKTESARAILREKAPQLLELIAQTTVFTSFGKGPRGMAESYGVPFLGSIPMDPNLLKACEEGEAFTTMYAESPAAKPFVKIVGAVVDATPD 361          
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: A0A835ZEQ2_9STRA (Cytosolic Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ2_9STRA)

HSP 1 Score: 177 bits (449), Expect = 4.950e-50
Identity = 94/154 (61.04%), Postives = 112/154 (72.73%), Query Frame = 3
Query:  264 QYLKGVKVDGAVLVTTPQEVAMADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAFTDASGQDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRA-MAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVVDVILQAT 722
            QYLKG  VDGAV+V+T QEV++ADVRKEINFCKKT I VLGVV NM+ +  P+ + AF +A G D TA   A L+   P  L+  +  DVF A  GG  A MA   GVPYLG +PLDPNLL+ACEEG SF+EAYP S AAKPFAA+VD +L+AT
Sbjct:  188 QYLKGCNVDGAVIVSTNQEVSLADVRKEINFCKKTSIKVLGVVGNMAALKFPVSQLAFRNAEGGDCTAEAMAALSAHAPHLLSMSVAADVFVAAEGGGAAGMAAKTGVPYLGPVPLDPNLLRACEEGRSFLEAYPMSAAAKPFAAIVDGVLKAT 341          
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: A0A024GTL4_9STRA (Cytosolic Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTL4_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.100e-46
Identity = 82/159 (51.57%), Postives = 113/159 (71.07%), Query Frame = 3
Query:  252 LSF*QYLKGVKVDGAVLVTTPQEVAMADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAFTDASGQDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVVDVILQATQD 728
            +S  QY+K   +DGAV+VTTPQEVA+ DVRKE+NFC+KT + VLGV+ENMS +  P+ E  F D SG D T  V+ VL    P+AL  +++  VF +  GG +AMA+A  VP+LG++PLDPN+  ACE+G+SFVEA+PTS A+  F  +V+ +L   Q+
Sbjct:  185 ISVVQYMKEADLDGAVVVTTPQEVALMDVRKELNFCRKTNVRVLGVIENMSALERPIREVKFLDTSGIDATEIVKKVLQTHAPQALDYLIQTQVFPSTNGGAKAMADAFQVPFLGRLPLDPNMTNACEDGISFVEAFPTSSASASFQTIVNTLLSFIQN 343          
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: F0WZ07_9STRA (Cytosolic Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZ07_9STRA)

HSP 1 Score: 164 bits (415), Expect = 4.520e-44
Identity = 79/151 (52.32%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  252 LSF*QYLKGVKVDGAVLVTTPQEVAMADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAFTDASGQDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVVD 704
            +S  QY+K   +DGAV+VTTPQEVA+ DVRKE+NFC+KT + VLGV+ENMS    P+    F D +G D T  V+ VL E  P+AL  +++  VF +  GG +AMAEA  VP+LG++PLDPN+  ACE+G+SF+EA+PTS A+  F  +V+
Sbjct:  278 ISVVQYMKEADLDGAVVVTTPQEVALMDVRKELNFCRKTNVRVLGVIENMSAFERPISSVKFLDTAGMDATEIVQKVLREHAPQALEYLMQTQVFPSSNGGAKAMAEAFQVPFLGRLPLDPNMTGACEDGISFIEAFPTSSASASFRTIVN 428          
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: A0A7S2UWA7_9STRA (Cytosolic Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWA7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 7.210e-44
Identity = 85/158 (53.80%), Postives = 109/158 (68.99%), Query Frame = 3
Query:  252 LSF*QYLKGVKVDGAVLVTTPQEVAMADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAFTDASGQDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVVDVILQATQ 725
            +S  QYLKG   DGAV+VTTPQEVAMADVRKE++FC KTGI VLG+VENM+   LPL E  F D + +D T  V AVL +  P+ L   +  + F AF  GP+ MA+  GVP+LG++PLDPNLLKACE G SF+  YP S AA+P   +V+ ++   +
Sbjct:  190 ISIVQYLKGCAADGAVVVTTPQEVAMADVRKELSFCSKTGIRVLGLVENMAASSLPLTELTFQDGA-EDRTEEVFAVLRQVAPQLLDLKVSFNPFPAFGEGPQGMAQKFGVPFLGKVPLDPNLLKACEAGGSFLSLYPNSTAARPLGLIVEKLVNTVE 346          
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: A0A662WGW0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGW0_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.250e-43
Identity = 80/148 (54.05%), Postives = 103/148 (69.59%), Query Frame = 3
Query:  264 QYLKGVKVDGAVLVTTPQEVAMADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAFTDASGQDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVVDV 707
            QY+K   +DGAV+VTTPQEVA++DVRKE+NFC+KT I+VLGVVENMS +   L +  F  A G D TA    +L EK PE L   ++++VF A  GG  AMA+   VP+LG++PLD  +  ACEEGVSF+E YP S AA  F+ +V V
Sbjct:    4 QYMKEADLDGAVVVTTPQEVALSDVRKELNFCRKTNINVLGVVENMSGVQRRLEDVKFVGADGDDQTAAFMKLLQEKAPELLQHSVQMEVFPAANGGGEAMAKKFNVPFLGRLPLDEKMTGACEEGVSFLEEYPDSVAAPAFSKIVQV 151          
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: B8BZX8_THAPS (Cytosolic Fe-S cluster assembly factor NUBP1 homolog n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZX8_THAPS)

HSP 1 Score: 160 bits (405), Expect = 3.350e-43
Identity = 84/153 (54.90%), Postives = 108/153 (70.59%), Query Frame = 3
Query:  291 GAVLVTTPQEVAMADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAF--TDASG--------QDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVVDVILQA 719
            GA++VTTP+EV+MADVRKE+NFCKKT + VLG+VENMS + + + +  F  T+A+G         D T  V A+L EKCPE L+ +   DVF A   GPR MAE   VPYLG++PLDPNLLKACEEG SFV+ +P+SPAA P   +VD ++ A
Sbjct:  214 GAIVVTTPEEVSMADVRKELNFCKKTSVPVLGIVENMSGLQMKVSDLKFFRTNANGGVDTTSDSPDCTNDVMAMLREKCPELLSMIAATDVFPASGNGPRGMAERFNVPYLGKLPLDPNLLKACEEGASFVDKFPSSPAATPLNDIVDKLILA 366          
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: A0A7S2BTI7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BTI7_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.530e-43
Identity = 82/151 (54.30%), Postives = 103/151 (68.21%), Query Frame = 3
Query:  252 LSF*QYLKGVKVDGAVLVTTPQEVAMADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAFTD-ASGQDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVV 701
            LS  QYL+G  +DGAV+VTTPQEVAM DVRKEINFC+KT + VLG+VENMS    P+    F D +SG DVTA   A++  KCPE L+ +   +VF AF  GP+ MA   GV  LG++PLD  L+ ACE+G +FV AYP S A  P  ++V
Sbjct:   37 LSIIQYLRGSGIDGAVVVTTPQEVAMQDVRKEINFCRKTNVEVLGLVENMSGYQSPVSNLQFRDPSSGADVTAATMAMIQSKCPELLSVMAHAEVFPAFGDGPQGMAAKFGVDLLGKLPLDNQLMAACEQGQAFVTAYPDSIACAPLKSIV 187          
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: K3WSY8_GLOUD (Cytosolic Fe-S cluster assembly factor NUBP1 homolog n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSY8_GLOUD)

HSP 1 Score: 158 bits (400), Expect = 7.900e-43
Identity = 81/160 (50.62%), Postives = 110/160 (68.75%), Query Frame = 3
Query:  252 LSF*QYLKGVKVDGAVLVTTPQEVAMADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAFTDASGQDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVVDVILQATQDK 731
            +S  QY+K   +DGAV+VTTPQEVA++DVRKE+NFC+KT I+VLGVVENMS +   L +  F  A G D TA    +L +K PE L   +R+DVF    GG  AMA+A GVP+LG++PLD  + +ACEEG SF++ YP S AA  F+ +V  ++ + + K
Sbjct:  185 ISIVQYMKEADLDGAVVVTTPQEVALSDVRKELNFCRKTKINVLGVVENMSGVQRTLDDVKFIGADGVDQTAVFMQLLKDKAPELLQHSVRMDVFPTAAGGGEAMAKAFGVPFLGRLPLDDKMTRACEEGASFLDEYPDSVAAPAFSQIVQDVINSVEKK 344          
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Match: A0A485KZS6_9STRA (Cytosolic Fe-S cluster assembly factor NUBP1 homolog n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KZS6_9STRA)

HSP 1 Score: 160 bits (404), Expect = 8.320e-43
Identity = 91/163 (55.83%), Postives = 113/163 (69.33%), Query Frame = 3
Query:  252 LSF*QYLKGVKVDGAVLVTTPQEVAMADVRKEINFCKKTGISVLG---VVENMSVMHLPLGEAAFTD-ASGQDVTATVRAVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLKACEEGVSFVEAYPTSPAAKPFAAVVD-VILQATQ 725
            +S  QY+K   +DGAV+VTTPQEVAMADVRKE+NFCKKTG+ VLG   VVENM+ +  PL    F D A+  D T  V  VL  K PE LA  ++L VF    GG  AMA+A GVP+LG++PLD  L ++CEEGV F+EAYPTS AA  F+ ++D VI QA +
Sbjct:  247 ISIVQYMKETNIDGAVVVTTPQEVAMADVRKELNFCKKTGVPVLGYDDVVENMAGLEQPLTACNFVDPATATDHTQHVLEVLKAKAPELLAYAVQLQVFPPAAGGGEAMAKAFGVPFLGRLPLDQKLTQSCEEGVGFLEAYPTSSAANAFSGILDHVIAQANK 409          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10990.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JII2_9PHAE1.440e-5258.13Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
A0A835ZEQ2_9STRA4.950e-5061.04Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
A0A024GTL4_9STRA2.100e-4651.57Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
F0WZ07_9STRA4.520e-4452.32Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
A0A7S2UWA7_9STRA7.210e-4453.80Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
A0A662WGW0_9STRA3.250e-4354.05Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
B8BZX8_THAPS3.350e-4354.90Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
A0A7S2BTI7_9STRA3.530e-4354.30Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K3WSY8_GLOUD7.900e-4350.63Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
A0A485KZS6_9STRA8.320e-4355.83Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10990contigP-wetherbeei_contig10990:548..2148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDZ4
Preferred nameNBP35
PFAMsParA
Model size830
Max annot lvl2759|Eukaryota
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K03593,ko:K12316
KEGG ReactionR00028,R00801,R00802
KEGG Pathwayko00052,ko00500,ko01100,ko04142,map00052,map00500,map01100,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001558,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0008033,GO:0008104,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0010564,GO:0010639,GO:0010824,GO:0010826,GO:0010948,GO:0015630,GO:0016020,GO:0016043,GO:0016070,GO:0016226,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0022607,GO:0030003,GO:0031163,GO:0031344,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036094,GO:0040008,GO:0042592,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044572,GO:0045786,GO:0046483,GO:0046605,GO:0046606,GO:0046872,GO:0046914,GO:0046916,GO:0046983,GO:0048037,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051129,GO:0051179,GO:0051186,GO:0051493,GO:0051494,GO:0051536,GO:0051539,GO:0051540,GO:0051640,GO:0051641,GO:0051642,GO:0051726,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060491,GO:0061842,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071704,GO:0071840,GO:0071944,GO:0072697,GO:0090304,GO:0097159,GO:0098771,GO:0120032,GO:0120035,GO:1901265,GO:1901360,GO:1901363,GO:1902017,GO:1902115,GO:1902494,GO:1902855,GO:1904564,GO:1904949,GO:1990229,GO:1990778
Exons4
Evalue2.65e-43
EggNOG OGsCOG0489@1|root,KOG3022@2759|Eukaryota
Ec32 ortholog descriptionMrp/NBP35 ATP-binding protein
Ec32 orthologEc-23_003200.1
EC3.2.1.20
DescriptionComponent of the cytosolic iron-sulfur (Fe S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NBP35-CFD1 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins
Cds size408
COG categoryD
CAZyGH31
BRITEko00000,ko00001,ko01000,ko03029,ko03036,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10990.1.2prot_P-wetherbeei_contig10990.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10990 644..1822 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185893.2814794-UTR-P-wetherbeei_contig10990:547..6431683185893.2814794-UTR-P-wetherbeei_contig10990:547..643Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10990 548..643 -
1683185893.3265042-UTR-P-wetherbeei_contig10990:1822..21481683185893.3265042-UTR-P-wetherbeei_contig10990:1822..2148Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10990 1823..2148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185893.2910945-CDS-P-wetherbeei_contig10990:643..7511683185893.2910945-CDS-P-wetherbeei_contig10990:643..751Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10990 644..751 -
1683185893.2992797-CDS-P-wetherbeei_contig10990:1004..12171683185893.2992797-CDS-P-wetherbeei_contig10990:1004..1217Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10990 1005..1217 -
1683185893.30828-CDS-P-wetherbeei_contig10990:1490..15351683185893.30828-CDS-P-wetherbeei_contig10990:1490..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10990 1491..1535 -
1683185893.3170357-CDS-P-wetherbeei_contig10990:1780..18221683185893.3170357-CDS-P-wetherbeei_contig10990:1780..1822Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10990 1781..1822 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10990.1.2

>prot_P-wetherbeei_contig10990.1.2 ID=prot_P-wetherbeei_contig10990.1.2|Name=mRNA_P-wetherbeei_contig10990.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
MADVRKEINFCKKTGISVLGVVENMSVMHLPLGEAAFTDASGQDVTATVR
AVLAEKCPEALAAVLRLDVFAAFRGGPRAMAEAGGVPYLGQIPLDPNLLK
ACEEGVSFVEAYPTSPAAKPFAAVVDVILQATQDK*
back to top

mRNA from alignment at P-wetherbeei_contig10990:548..2148-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10990.1.2 ID=mRNA_P-wetherbeei_contig10990.1.2|Name=mRNA_P-wetherbeei_contig10990.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1601bp|location=Sequence derived from alignment at P-wetherbeei_contig10990:548..2148- (Phaeothamnion wetherbeei SAG_119_79)
CGGTGGTGACGGCGGTAGTGGCGACGATGGTGGTGGCGGCGGCGGTAGCA GGATGACTGCGGCGGCGGCGGCGGTGGCAAGAGGACTGTGACAGCAGCAA CGGTGGCTTCGGTGGCCGTGGCATGGCCGGATTGCGTTGGAAATTGCGGA TTGGATGTCGTGTCGCGTGACTTTTACGTTACATTGTTAAGGTGCTCATG CTTCCGGCGTGTGCTCCAGGACGTATCTTGCTGTCCTGACAGTCTTTTTC ACTCTCTTTTTGACAGTACCTTAAGGGAGTCAAGGTGGACGGAGCCGTCT TGGTGACGACGCCGCAGGAGGTGGCCATGGCCGACGTCCGAAAAGAGATC AATTTCTGCAAGAAGACTGTGAGCGCTTACCTGTTTCTCTAGGAAGTGCT TCTATTTTGCTACCTCTTTTTTCCGTCAAAAACCTGATGAATGTGTTCTT AAGGCATCTTTCAGACCTGAGCTTGCGAGCTTTTATCTATTGCTACCAAC GTGTTTGGCTCCTGCGCTTTTGGGAGCGCCATCGGAAAACCAGTCGCTTT CCGATTCAAAGAGCTGATGCGGCCGGACATTCCGGCTCGCGCTTCATATC TCGTCTGCTGCAGGGAATATCTGTGCTCGGCGTTGTGGAGAACATGAGCG TCATGCACGTGAGTCGAGTCACGTACGCCGATCATTTGTTTCGAGAAATA TGTTATGGATTGCGCAGCCGATTCTTGTCCAAAGAAATGAACTGATTGGC GATATATCGTTGCTTCGATTTTCTCGCGGAAGTCTACGTCCTCTTCGTTT TACAGCAGCACGCCGTCTCTCCGTCTTCCCAACCCCCTATGTTGCACTTT TCTTACTGATGCTGTCCGGGATCATCTACACATCGACACCGCATCGGCAA CGGCGGCGGTGGTTTTGGCATCGATGAGCAGCTGCCGCTGGGCGAGGCGG CATTCACGGACGCCAGCGGCCAGGACGTGACGGCGACGGTGCGTGCGGTG CTGGCGGAGAAGTGCCCCGAGGCACTGGCGGCTGTCCTGCGGCTCGACGT CTTCGCTGCGTTCCGGGGCGGGCCGCGGGCCATGGCGGAGGCCGGCGGCG TGCCGTACCTCGGGCAGATCCCGCTCGACCCGAACCTGCTCAAAGTGCGT CTTTTTCTGTCGTGTTCATGGCGGGGGAGTTCATGTGGCACGGCAGGAGA TTGCAGACCCGGCGGATCATGCTGTACTTTTTAAACGTCGTGCATCAGCG GTATTTTTTTTTTCTCATTCAACATGTAAATGGGGGGATCCTTGGACAAC GAGTGCCATCAAACTTATGTGCCTATTCCTCTCCTGATTTTTCCCGCTCT ATTTTCCCCTTTCTCGGTCGGTGACGGCGGCGGGGCGCGGACTGCAGGCC TGTGAGGAGGGCGTGTCTTTCGTCGAGGCGTATCCGACGTCCCCCGCGGC GAAGCCCTTTGCCGCAGTGGTTGACGTCATCCTCCAAGCAACGCAGGACA AATAATTAGAGAGAAAGAAGAGAAGTTGCTGATGGTGGTCCCCATTTGCT TTCAGCCTGTGGTTACTCTTGGTTAGCTTTTCCCTTTTCAATGCGTAACG G
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10990:548..2148-

>mRNA_P-wetherbeei_contig10990.1.2 ID=mRNA_P-wetherbeei_contig10990.1.2|Name=mRNA_P-wetherbeei_contig10990.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig10990:548..2148- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACGTCCGAAAAGAGATCAATTTCTGCAAGAAGACTGGAATATC
TGTGCTCGGCGTTGTGGAGAACATGAGCGTCATGCACCTGCCGCTGGGCG
AGGCGGCATTCACGGACGCCAGCGGCCAGGACGTGACGGCGACGGTGCGT
GCGGTGCTGGCGGAGAAGTGCCCCGAGGCACTGGCGGCTGTCCTGCGGCT
CGACGTCTTCGCTGCGTTCCGGGGCGGGCCGCGGGCCATGGCGGAGGCCG
GCGGCGTGCCGTACCTCGGGCAGATCCCGCTCGACCCGAACCTGCTCAAA
GCCTGTGAGGAGGGCGTGTCTTTCGTCGAGGCGTATCCGACGTCCCCCGC
GGCGAAGCCCTTTGCCGCAGTGGTTGACGTCATCCTCCAAGCAACGCAGG
ACAAATAA
back to top