mRNA_P-wetherbeei_contig10977.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig10977.1.1
Unique Name	mRNA_P-wetherbeei_contig10977.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: A0A7S1CE70_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CE70_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.350e-23
Identity = 51/141 (36.17%), Postives = 76/141 (53.90%), Query Frame = 1

Query:   34 DKSKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSRWY 456
            ++++  L+  RLF   D      ++  EL S L V CGG+R++ V                     F+L+  +GDG IS+++M LYL SVFR+LY+  PG  + LG+  E LA     Q F+D +   DG++SL EF+RWY
Sbjct:   28 EETRATLVAERLFSLFDADGNGVVDFSELASGLSVLCGGTRDDKVS------------------VAFQLYDLNGDGHISMEEMALYLTSVFRMLYETQPGTAERLGVPPEELAAVTTEQCFRDADLNRDGKLSLDEFTRWY 150

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: A0A484EDJ7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDJ7_BRELC)

HSP 1 Score: 101 bits (252), Expect = 4.490e-22
Identity = 58/141 (41.13%), Postives = 78/141 (55.32%), Query Frame = 1

Query:   40 SKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSRWYTR 462
            ++LRL+L RLF   D  +   ++  EL S L V CGGSR E V                  RA F L+  + DG ISL +M  YLASVF+VLY+ SPG ++ LG++ E LA   A Q F + N   DG++S  EF  WY++
Sbjct: 2062 ARLRLILNRLFVIFDENNTGTVDFCELSSGLSVLCGGSREEKV------------------RAAFSLYDLNRDGLISLDEMVRYLASVFKVLYETSPGTDEKLGVQPEDLAIISAEQCFLEANLNEDGKLSFDEFVSWYSK 2184

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: A0A0W8DU45_PHYNI (Short-chain specific acyl-CoA dehydrogenase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DU45_PHYNI)

HSP 1 Score: 100 bits (248), Expect = 1.470e-21
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 1

Query:   40 SKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSRWYTR 462
            ++LRL+L RLF   D   +  ++  EL S L V CGGSR E V                  RA F L+  + DG ISL +M  YLASVF+VLY+ SPG +  LG+  E LA   A Q F + +   DG++S  EF  WY++
Sbjct:  666 ARLRLILNRLFIIFDENQDGTVDFCELTSGLSVLCGGSREEKV------------------RAAFSLYDLNQDGFISLDEMVRYLASVFKVLYETSPGTDRKLGVRPEELATITAEQCFLEADLNEDGKLSFDEFVAWYSK 788

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: H3GGD8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGD8_PHYRM)

HSP 1 Score: 100 bits (248), Expect = 1.550e-21
Identity = 60/143 (41.96%), Postives = 79/143 (55.24%), Query Frame = 1

Query:   40 SKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAF--QDLNTVGDGRISLREFSRWYTR 462
            ++LRL+L RLF   D      ++  EL S L V CGGSR E V                  RA F L+  + DG ISL +M  YLASVF+VLY+ SPG ++ LG++ + LA   A Q F   DLNT  DG++S  EF  WY++
Sbjct: 2026 TRLRLILNRLFVIFDEDHNGAVDFCELSSGLSVLCGGSREEKV------------------RAAFSLYDLNQDGFISLDEMVRYLASVFKVLYETSPGTDEKLGVQPDELATITAEQCFLEADLNT--DGKLSFDEFVTWYSK 2148

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: W2ZEK2_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2ZEK2_PHYPR)

HSP 1 Score: 100 bits (248), Expect = 1.550e-21
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 1

Query:   40 SKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSRWYTR 462
            ++LRL+L RLF   D   +  ++  EL S L V CGGSR E V                  RA F L+  + DG ISL +M  YLASVF+VLY+ SPG +  LG+  E LA   A Q F + +   DG++S  EF  WY++
Sbjct: 2063 ARLRLILNRLFIIFDENQDGTVDFCELTSGLSVLCGGSREEKV------------------RAAFSLYDLNQDGFISLDEMVRYLASVFKVLYETSPGTDRKLGVRPEELATITAEQCFLEADLNEDGKLSFDEFVAWYSK 2185

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: W2ZBH8_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2ZBH8_PHYPR)

HSP 1 Score: 100 bits (248), Expect = 1.550e-21
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 1

Query:   40 SKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSRWYTR 462
            ++LRL+L RLF   D   +  ++  EL S L V CGGSR E V                  RA F L+  + DG ISL +M  YLASVF+VLY+ SPG +  LG+  E LA   A Q F + +   DG++S  EF  WY++
Sbjct: 2063 ARLRLILNRLFIIFDENQDGTVDFCELTSGLSVLCGGSREEKV------------------RAAFSLYDLNQDGFISLDEMVRYLASVFKVLYETSPGTDRKLGVRPEELATITAEQCFLEADLNEDGKLSFDEFVAWYSK 2185

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: W2Q9D3_PHYPN (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=W2Q9D3_PHYPN)

HSP 1 Score: 100 bits (248), Expect = 1.550e-21
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 1

Query:   40 SKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSRWYTR 462
            ++LRL+L RLF   D   +  ++  EL S L V CGGSR E V                  RA F L+  + DG ISL +M  YLASVF+VLY+ SPG +  LG+  E LA   A Q F + +   DG++S  EF  WY++
Sbjct: 2068 ARLRLILNRLFIIFDENQDGTVDFCELTSGLSVLCGGSREEKV------------------RAAFSLYDLNQDGFISLDEMVRYLASVFKVLYETSPGTDRKLGVRPEELATITAEQCFLEADLNEDGKLSFDEFVAWYSK 2190

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: A0A6G0SMC9_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6G0SMC9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.110e-21
Identity = 57/141 (40.43%), Postives = 78/141 (55.32%), Query Frame = 1

Query:   40 SKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSRWYTR 462
            ++LRL+L RLF   D      ++  EL S L V CGGSR+E V                  RA F L+  + DG ISL +M  YLASVF+VLY+ SPG ++ LG++ E LA   A Q F + +   DG++S  EF  WY++
Sbjct: 2085 ARLRLILNRLFVIFDEDRSGTVDFCELCSGLSVLCGGSRDEKV------------------RAAFSLYDLNQDGFISLDEMVRYLASVFKVLYETSPGTDEKLGVQPEELATITAEQCFLEADLNEDGKLSFDEFVVWYSK 2207

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: K3WY98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WY98_GLOUD)

HSP 1 Score: 98.2 bits (243), Expect = 7.190e-21
Identity = 55/140 (39.29%), Postives = 76/140 (54.29%), Query Frame = 1

Query:   43 KLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSRWYTR 462
            +LR++L RLF   DT     ++  EL S L V CGG+R + V                  R+ F L+  + DG ISL++M  YL SVF+VLY+ SPG    LG++ E LA   A Q F + +   DG++S  EF RWY+R
Sbjct: 1423 RLRMILDRLFTIFDTDGNGIVDFCELSSGLSVLCGGTREDKV------------------RSAFALYDLNQDGFISLEEMAQYLTSVFKVLYETSPGTHAKLGVQPEELAVITAEQCFLEADLNHDGKLSFDEFVRWYSR 1544

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BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Match: A0A662WUA9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUA9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.340e-20
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 1

Query:   37 KSKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGGSRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLASVFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSRWY 456
            + KL+ ++  LFD  DT +   ++  EL S L V CGG++++ V+                  A F LF  +GDG ISL +MT YL SVFRVL+ +SP  +  LG+  E L E  A QAF + +   DG+++L+EF  WY
Sbjct: 1505 QEKLQEVIDGLFDLFDTDNSGTVDFGELASGLSVLCGGTKDQKVE------------------AAFSLFDFNGDGFISLDEMTRYLTSVFRVLFQVSPDTQS-LGVSPEELGEVTAQQAFAEADQDHDGQLTLKEFQHWY 1625

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig10977.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S1CE70_9STRA	7.350e-23	36.17	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
A0A484EDJ7_BRELC	4.490e-22	41.13	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]
A0A0W8DU45_PHYNI	1.470e-21	40.43	Short-chain specific acyl-CoA dehydrogenase n=1 Ta...	[more]
H3GGD8_PHYRM	1.550e-21	41.96	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
W2ZEK2_PHYPR	1.550e-21	40.43	Uncharacterized protein n=1 Tax=Phytophthora paras...	[more]
W2ZBH8_PHYPR	1.550e-21	40.43	Uncharacterized protein n=1 Tax=Phytophthora paras...	[more]
W2Q9D3_PHYPN	1.550e-21	40.43	Uncharacterized protein n=19 Tax=Phytophthora TaxI...	[more]
A0A6G0SMC9_9STRA	2.110e-21	40.43	Uncharacterized protein n=7 Tax=Phytophthora TaxID...	[more]
K3WY98_GLOUD	7.190e-21	39.29	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A662WUA9_9STRA	1.340e-20	38.57	Uncharacterized protein (Fragment) n=2 Tax=Nothoph...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig10977	contig	P-wetherbeei_contig10977:410..1006 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	4787.PITG_04603T0
PFAMs	EF-hand_1,EF-hand_5,EF-hand_7
Model size	462
Max annot lvl	4776\|Peronosporales
Hectar predicted targeting category	other localisation
Exons	2
Evalue	1.86e-22
EggNOG OGs	COG5126@1\|root,KOG0034@2759\|Eukaryota,KOG0044@2759\|Eukaryota,3QB7C@4776\|Peronosporales
Description	EF-hand domain pair
Cds size	462
COG category	T

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185892.3291833-CDS-P-wetherbeei_contig10977:409..652	1683185892.3291833-CDS-P-wetherbeei_contig10977:409..652	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig10977 410..652 -
1683185892.3464804-CDS-P-wetherbeei_contig10977:787..1006	1683185892.3464804-CDS-P-wetherbeei_contig10977:787..1006	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig10977 788..1006 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig10977.1.1	prot_P-wetherbeei_contig10977.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig10977 410..1006 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig10977:410..1006-
coding sequence from alignment at P-wetherbeei_contig10977:410..1006-

protein sequence of mRNA_P-wetherbeei_contig10977.1.1

>prot_P-wetherbeei_contig10977.1.1 ID=prot_P-wetherbeei_contig10977.1.1|Name=mRNA_P-wetherbeei_contig10977.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MRGIGGSSAATDKSKLRLLLGRLFDAVDTADESRINAQELPSDLGVFCGG
SRNEDVDGPLRGCAFPLAPTRCLVRAVFELFATDGDGCISLQQMTLYLAS
VFRVLYDMSPGHEDGLGLEFERLAEAVALQAFQDLNTVGDGRISLREFSR
WYTR

mRNA from alignment at P-wetherbeei_contig10977:410..1006-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig10977.1.1 ID=mRNA_P-wetherbeei_contig10977.1.1|Name=mRNA_P-wetherbeei_contig10977.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=597bp|location=Sequence derived from alignment at P-wetherbeei_contig10977:410..1006- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAGGCATCGGCGGAAGCAGCGCGGCGACGGACAAGTCGAAGCTGCG
GCTGCTGCTAGGGCGGCTATTCGACGCAGTGGACACGGCGGACGAGAGCC
GCATCAACGCGCAGGAGCTGCCGAGTGACCTCGGCGTTTTCTGCGGGGGC
AGTCGCAACGAAGATGTGGACGGTCCACTTCGTGGTTGCGCTTTTCCTCT
CGCCCCCACACGGTGTTTGGTTCTGGCGGTTTTGCTAGTTTGTTGGACCA
TTACCTTTCTCTCTCACCTATCGTGCAACGGAAACCGTTTCTACGCGTAT
GGGGCTTCTGTTGGGTTGACCAATAGCGCGCCGCGGTGCACTCTTCTGCT
GCAGGTCCGGGCGGTGTTCGAGTTGTTCGCGACAGACGGTGATGGGTGCA
TCTCGCTGCAGCAGATGACTCTCTACCTGGCATCCGTCTTCCGCGTGCTT
TACGATATGTCGCCGGGCCACGAGGACGGCCTCGGGCTCGAGTTCGAGCG
ACTGGCCGAGGCGGTCGCCTTGCAGGCCTTCCAGGATTTGAATACGGTCG
GTGACGGTCGCATTTCCTTGCGAGAGTTCTCGCGGTGGTATACGCGT

Coding sequence (CDS) from alignment at P-wetherbeei_contig10977:410..1006-

>mRNA_P-wetherbeei_contig10977.1.1 ID=mRNA_P-wetherbeei_contig10977.1.1|Name=mRNA_P-wetherbeei_contig10977.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig10977:410..1006- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAGGCATCGGCGGAAGCAGCGCGGCGACGGACAAGTCGAAGCTGCG
GCTGCTGCTAGGGCGGCTATTCGACGCAGTGGACACGGCGGACGAGAGCC
GCATCAACGCGCAGGAGCTGCCGAGTGACCTCGGCGTTTTCTGCGGGGGC
AGTCGCAACGAAGATGTGGACGGTCCACTTCGTGGTTGCGCTTTTCCTCT
CGCCCCCACACGGTGTTTGGTCCGGGCGGTGTTCGAGTTGTTCGCGACAG
ACGGTGATGGGTGCATCTCGCTGCAGCAGATGACTCTCTACCTGGCATCC
GTCTTCCGCGTGCTTTACGATATGTCGCCGGGCCACGAGGACGGCCTCGG
GCTCGAGTTCGAGCGACTGGCCGAGGCGGTCGCCTTGCAGGCCTTCCAGG
ATTTGAATACGGTCGGTGACGGTCGCATTTCCTTGCGAGAGTTCTCGCGG
TGGTATACGCGT