prot_P-wetherbeei_contig10964.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig10964.2.1
Unique Nameprot_P-wetherbeei_contig10964.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length206
Homology
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK)

HSP 1 Score: 176 bits (447), Expect = 2.330e-49
Identity = 97/167 (58.08%), Postives = 118/167 (70.66%), Query Frame = 0
Query:   39 IFVGALIYVEKNLFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHI-WCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTL 204
            IF+G L+Y ++    RH+           +    QVRATGPVNPLTRQPVKGRK+ GG+RFGEMERDALLSHGAAFLLHDRLMNCSDRH A VC++CG +L+T + R     AGQS   A  + R  + +C  C+SS   H ++LPYVFRYL NELAGMNIK++L L
Sbjct:  346 IFIG-LVYYQR---LRHM-----------VSDKSQVRATGPVNPLTRQPVKGRKRHGGIRFGEMERDALLSHGAAFLLHDRLMNCSDRHPALVCSKCGSVLSTVTTRKSILTAGQSESLAQMSDRGTVGYCRFCESSDHCHVISLPYVFRYLANELAGMNIKINLKL 497          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A425D3L1_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D3L1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.430e-49
Identity = 84/132 (63.64%), Postives = 104/132 (78.79%), Query Frame = 0
Query:   73 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTL 204
            QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA    AGQS  +  +  R+   C+ C++     AVA+PYVFRYL NELA MNIK++L+L
Sbjct:  224 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSL 355          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 6.830e-48
Identity = 93/167 (55.69%), Postives = 112/167 (67.07%), Query Frame = 0
Query:   39 IFVGALIYVEKNLFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAA-RRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTL 204
            IF+G L+Y ++    RH+           +    QVRATGPVNPLTRQP+KGRK+ GG+RFGEMERD+LLSHGA+FLLHDRLMNCSDRH   +CA CG LL+  + R P E  GQ G +      +R ++C  CKS      VALPYVFRYL NELAGM IK+ L L
Sbjct:  231 IFIG-LVYYQR---LRHM-----------VSDKSQVRATGPVNPLTRQPIKGRKRHGGIRFGEMERDSLLSHGASFLLHDRLMNCSDRHTGWICADCGSLLSPTTLRNPVEYIGQDGGSELLEHHKRTVFCRVCKSHNSCKPVALPYVFRYLANELAGMGIKMDLKL 382          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: K3WI27_GLOUD (DNA-directed RNA polymerase subunit beta n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WI27_GLOUD)

HSP 1 Score: 176 bits (446), Expect = 2.360e-47
Identity = 87/132 (65.91%), Postives = 105/132 (79.55%), Query Frame = 0
Query:   73 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTL 204
            QVRATGP+N LTRQPVKGRKK GG+RFGEMERD+LL+HG AFLL DRL+NCSD+H+A VC  CG LL+ A++RA  E AGQ   A A  A+   +C+ C+S A+  AVA+PYVFRYL NELA MNIK+SL+L
Sbjct: 1048 QVRATGPMNSLTRQPVKGRKKGGGIRFGEMERDSLLAHGCAFLLQDRLLNCSDKHIATVCTNCGSLLSNATQRASVETAGQGEIAVAMKAKTQWYCTVCQSGANCQAVAMPYVFRYLANELAAMNIKMSLSL 1179          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A397FDW6_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FDW6_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.350e-47
Identity = 84/132 (63.64%), Postives = 104/132 (78.79%), Query Frame = 0
Query:   73 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTL 204
            QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA    AGQS  +  +  R+   C+ C++     AVA+PYVFRYL NELA MNIK++L+L
Sbjct:  488 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSL 619          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A5D6YCW8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCW8_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.370e-47
Identity = 87/132 (65.91%), Postives = 102/132 (77.27%), Query Frame = 0
Query:   73 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTL 204
            QVRATGP+N LTRQPVKGRKK GG+RFGEMERD+LL+HG AFLL DRLMNCSD+H+A VC  CG LL+ A++RA  E AGQ   A A  A+   +C  C+  A   AVA+PYVFRYL NELA MNIK+SL+L
Sbjct: 1048 QVRATGPMNSLTRQPVKGRKKGGGIRFGEMERDSLLAHGCAFLLQDRLMNCSDKHIATVCTNCGSLLSNATQRASVETAGQGEVAVAIKAKSQWYCQVCRDGAHCQAVAMPYVFRYLANELAAMNIKMSLSL 1179          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A6H5KR08_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR08_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 6.320e-47
Identity = 99/183 (54.10%), Postives = 114/183 (62.30%), Query Frame = 0
Query:   39 IFVGALIYVEKNLFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAAR--------------RHIWCSAC--KSSADVHAVALPYVFRYLVNELAGMNIKVSLTLS 205
            IF+G L+Y ++    RH+           +    QVRATGPVN LTRQP+KGRK KGGVR GEMERDALLSHGAAFLLHDRLMNCSDRH+AHVC+ CG LL+T++RR     AGQS                       R I C A   K    V AVA+PYVFRYL NELAGM IK++L  S
Sbjct:  100 IFIG-LVYYQR---LRHM-----------VSDKSQVRATGPVNQLTRQPIKGRKNKGGVRLGEMERDALLSHGAAFLLHDRLMNCSDRHIAHVCSTCGSLLSTSARRGAVATAGQSXXXXXXXXXXXXXXXXXXXXXXIRCITCPASGGKGGGKVVAVAMPYVFRYLANELAGMGIKLTLKTS 267          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A3R7ERU9_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ERU9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.980e-46
Identity = 84/132 (63.64%), Postives = 104/132 (78.79%), Query Frame = 0
Query:   73 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTL 204
            QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA    AGQS  +  +  R+   C+ C++     AVA+PYVFRYL NELA MNIK++L+L
Sbjct:  661 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSL 792          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: W4FT36_9STRA (DNA-directed RNA polymerase subunit beta n=9 Tax=Aphanomyces TaxID=100860 RepID=W4FT36_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.800e-46
Identity = 84/132 (63.64%), Postives = 104/132 (78.79%), Query Frame = 0
Query:   73 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTL 204
            QVRATGP+N LTRQP+KGRKKKGG+RFGEMERD+LL+HG AFLLHDRLMNCSD+H+A VC +CG LL+T + RA    AGQS  +  +  R+   C+ C++     AVA+PYVFRYL NELA MNIK++L+L
Sbjct: 1036 QVRATGPMNSLTRQPLKGRKKKGGIRFGEMERDSLLAHGCAFLLHDRLMNCSDKHIATVCTKCGSLLSTWTARASVSEAGQSDQSILSKERQQWMCATCRTGDGCEAVAMPYVFRYLANELAAMNIKMTLSL 1167          
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Match: A0A6G0W8Q0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8Q0_9STRA)

HSP 1 Score: 172 bits (435), Expect = 7.050e-46
Identity = 87/133 (65.41%), Postives = 103/133 (77.44%), Query Frame = 0
Query:   73 QVRATGPVNPLTRQPVKGRKKKGGVRFGEMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEAAGQSGPAAAAAARRHIW-CSACKSSADVHAVALPYVFRYLVNELAGMNIKVSLTL 204
            QVRATGP N LTRQPVKGRKK+GG+RFGEMERDALL+HG +FLLHDRLMNCSD+H+A VC +CG LL+T ++RA    AGQS  A A    R  W C+ C++     AVA+PYVFRYL NELA MNIK++L L
Sbjct: 1032 QVRATGPTNSLTRQPVKGRKKRGGIRFGEMERDALLAHGTSFLLHDRLMNCSDKHIATVCTKCGSLLSTWTQRASVSDAGQSDLAIALHKDRKQWMCATCRTGEACEAVAMPYVFRYLANELAAMNIKMTLAL 1164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10964.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UTQ0_HETAK2.330e-4958.08DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A425D3L1_9STRA3.430e-4963.64DNA-directed RNA polymerase (Fragment) n=1 Tax=Aph... [more]
A0A7S2V1Y1_9STRA6.830e-4855.69DNA-directed RNA polymerase n=1 Tax=Fibrocapsa jap... [more]
K3WI27_GLOUD2.360e-4765.91DNA-directed RNA polymerase subunit beta n=1 Tax=G... [more]
A0A397FDW6_9STRA4.350e-4763.64DNA-directed RNA polymerase n=1 Tax=Aphanomyces as... [more]
A0A5D6YCW8_9STRA4.370e-4765.91DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A6H5KR08_9PHAE6.320e-4754.10DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A3R7ERU9_9STRA1.980e-4663.64DNA-directed RNA polymerase subunit beta (Fragment... [more]
W4FT36_9STRA3.800e-4663.64DNA-directed RNA polymerase subunit beta n=9 Tax=A... [more]
A0A6G0W8Q0_9STRA7.050e-4665.41DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 72..99
e-value: 3.5E-8
score: 35.0
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 95..203
e-value: 6.0E-25
score: 87.5
NoneNo IPR availableGENE3D3.90.1800.10RNA polymerase alpha subunit dimerisation domaincoord: 100..205
e-value: 9.5E-37
score: 126.8
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 73..202
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 73..204
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 73..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10964contigP-wetherbeei_contig10964:584..1201 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10964.2.1mRNA_P-wetherbeei_contig10964.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig10964 556..1667 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig10964.2.1 ID=prot_P-wetherbeei_contig10964.2.1|Name=mRNA_P-wetherbeei_contig10964.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
MASLRMHCCNFSAPGCICRHGSIQSMERPANWRLHICLIFVGALIYVEKN
LFSRHLAQFLPPHLPPSIGLLGQVRATGPVNPLTRQPVKGRKKKGGVRFG
EMERDALLSHGAAFLLHDRLMNCSDRHVAHVCARCGGLLTTASRRAPQEA
AGQSGPAAAAAARRHIWCSACKSSADVHAVALPYVFRYLVNELAGMNIKV
SLTLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007641RNA_pol_Rpb2_7
IPR015712DNA-dir_RNA_pol_su2