mRNA_P-wetherbeei_contig1095.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1095.3.1
Unique NamemRNA_P-wetherbeei_contig1095.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: W4GUY7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GUY7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.030e-15
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:  179 MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPGWRSGKCTAA 316
            MCRK+ CS C KP+WAGCGQHI+SAL+ VA ADRCP W++GK  AA
Sbjct:    1 MCRKIDCSVCHKPTWAGCGQHIDSALANVAVADRCPSWQTGKHDAA 46
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: A0A067CBU3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBU3_SAPPC)

HSP 1 Score: 72.4 bits (176), Expect = 2.740e-14
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 2 
Query:  179 MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPGWRSGK 304
            MC KV C+ C K +W GCGQHI+SAL+GVA+ADRCPGWR+GK
Sbjct:    1 MCFKVNCAVCQKATWQGCGQHIDSALAGVADADRCPGWRTGK 42
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: A0A2D4BY36_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY36_PYTIN)

HSP 1 Score: 72.4 bits (176), Expect = 3.020e-14
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 2 
Query:  179 MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPGWRSGK 304
            MC KV C  C KP+W GCG H+ESALSGVAEADRCP W+SGK
Sbjct:    1 MCMKVECPTCHKPTWRGCGFHVESALSGVAEADRCPEWKSGK 42
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: A0A067CK00_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CK00_SAPPC)

HSP 1 Score: 70.5 bits (171), Expect = 1.440e-13
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:  179 MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPGWRSGK 304
            MC K++CS C K +W GCGQHI+SAL GV EA+RCPGWR+G+
Sbjct:    1 MCHKISCSVCQKATWQGCGQHIQSALQGVPEAERCPGWRTGQ 42
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: A0A225VXX0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VXX0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.980e-13
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 2 
Query:  179 MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPGWRSGK 304
            MC KV C  C KP+W GCG HIE+ALSGV E DRCP W+SGK
Sbjct:    1 MCLKVECPTCNKPTWMGCGMHIEAALSGVKEEDRCPKWKSGK 42
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: A0A1G9YCV5_9ACTO (Uncharacterized protein n=3 Tax=Actinomyces TaxID=1654 RepID=A0A1G9YCV5_9ACTO)

HSP 1 Score: 68.6 bits (166), Expect = 9.370e-13
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 2 
Query:  179 MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPG 289
            MCRKVTC KCGKP+WAGCGQHIE AL+GV ++ RC G
Sbjct:    1 MCRKVTCKKCGKPTWAGCGQHIEQALAGVPKSQRCQG 37
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: A0A7X0FRM2_9MICO (Uncharacterized protein n=1 Tax=Microbacterium thalassium TaxID=362649 RepID=A0A7X0FRM2_9MICO)

HSP 1 Score: 67.8 bits (164), Expect = 1.180e-12
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 2 
Query:  179 MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPG 289
            MC+++TCS CGKP+WAGCGQH+E AL+GVAE DRC G
Sbjct:    1 MCQRITCSICGKPTWAGCGQHVELALAGVAEKDRCQG 37
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: M4B7E5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7E5_HYAAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.620e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 2 
Query:  149 LSPRRKSTAIMCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPGWRSGK 304
            ++ +++   +MC KV CS C K SW GCG HI++AL+GV E DRCP W++GK
Sbjct:    1 MNAKKRRKDLMCMKVECSTCHKASWKGCGLHIDTALNGVKEQDRCPNWKTGK 52
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: A0A7X7JY28_9ACTN (Uncharacterized protein n=1 Tax=Propionibacterium sp. TaxID=1977903 RepID=A0A7X7JY28_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 2.240e-12
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 2 
Query:  179 MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPG 289
            MC KVTC KCGKP+WAGCG HIESAL GVA++ RC G
Sbjct:    1 MCHKVTCRKCGKPTWAGCGNHIESALKGVAKSQRCQG 37
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BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Match: A0A6J6N9H1_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6N9H1_9ZZZZ)

HSP 1 Score: 67.0 bits (162), Expect = 2.320e-12
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  179 MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRC 283
            MC KVTC KCGKP+W GCG+HIE ALSGVAE DRC
Sbjct:    1 MCSKVTCFKCGKPTWDGCGEHIEEALSGVAEQDRC 35
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1095.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GUY7_9STRA7.030e-1569.57Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A067CBU3_SAPPC2.740e-1471.43Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4BY36_PYTIN3.020e-1473.81Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A067CK00_SAPPC1.440e-1366.67Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A225VXX0_9STRA3.980e-1369.05Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A1G9YCV5_9ACTO9.370e-1375.68Uncharacterized protein n=3 Tax=Actinomyces TaxID=... [more]
A0A7X0FRM2_9MICO1.180e-1272.97Uncharacterized protein n=1 Tax=Microbacterium tha... [more]
M4B7E5_HYAAE1.620e-1251.92Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7X7JY28_9ACTN2.240e-1275.68Uncharacterized protein n=1 Tax=Propionibacterium ... [more]
A0A6J6N9H1_9ZZZZ2.320e-1280.00Unannotated protein n=1 Tax=freshwater metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1095contigP-wetherbeei_contig1095:4349..4988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008613633.1
Model size451
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.17e-16
EggNOG OGs2D4ZD@1|root,2SWTN@2759|Eukaryota
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.3384802-UTR-P-wetherbeei_contig1095:4348..45261683185891.3384802-UTR-P-wetherbeei_contig1095:4348..4526Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1095 4349..4526 +
1683185891.3809867-UTR-P-wetherbeei_contig1095:4904..49881683185891.3809867-UTR-P-wetherbeei_contig1095:4904..4988Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1095 4905..4988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185891.3570218-CDS-P-wetherbeei_contig1095:4526..45971683185891.3570218-CDS-P-wetherbeei_contig1095:4526..4597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1095 4527..4597 +
1683185891.367444-CDS-P-wetherbeei_contig1095:4786..49041683185891.367444-CDS-P-wetherbeei_contig1095:4786..4904Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1095 4787..4904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1095.3.1prot_P-wetherbeei_contig1095.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1095 4527..4904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1095.3.1

>prot_P-wetherbeei_contig1095.3.1 ID=prot_P-wetherbeei_contig1095.3.1|Name=mRNA_P-wetherbeei_contig1095.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MCRKVTCSKCGKPSWAGCGQHIESALSGVAEADRCPGWRSGKCTAAGGGD
AGAKTGAKCGPS*
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mRNA from alignment at P-wetherbeei_contig1095:4349..4988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1095.3.1 ID=mRNA_P-wetherbeei_contig1095.3.1|Name=mRNA_P-wetherbeei_contig1095.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=640bp|location=Sequence derived from alignment at P-wetherbeei_contig1095:4349..4988+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGCAAAGTCCGCGGACTGCCAGCGAAGAGACGTCTCATTGCGAAGGC
AGTAAAAAGCAACTAAAAGGCAACTTTGCAGCGACGACGATCAGCCGCGA
GACCAATATCTTCTTGGAATCTGTGTCGCAGAATCGCGACTTCCACGTCT
TTCGCCTCGAAGGAAATCGACAGCTATTATGTGTCGTAAGGTGACTTGCT
CGAAATGCGGCAAGCCATCCTGGGCGGGCTGCGGACAGCACATCGAGAGG
TGAGCAGCAGCATGGCATTCGACCAAATGATAATCTGTTTCTTGTGGAAG
CATGCACCGTATTCCTCCACCTCTGCAGCGCGTCTCTTCTTCTGGCGTTG
CTGTGTCGCTTGAAAGCCGGAGATGATGAACGGAGCCTGTTGTCACCAAC
AGCTTCTTCCCCTCGTCTCCACGTGGACCCTGTTGCAGCGCCTTGTCCGG
CGTCGCGGAAGCCGATCGCTGCCCCGGCTGGCGGAGCGGAAAGTGCACTG
CTGCTGGAGGTGGAGATGCTGGTGCCAAAACCGGCGCGAAATGCGGACCT
TCTTGACGCGTCTACGTGCAGAGCGGACCGTGCAGCGGAAAGGGAGGTAG
CAGGCTGTACCTATTAGTAATGAGAGGAACATAATAGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1095:4349..4988+

>mRNA_P-wetherbeei_contig1095.3.1 ID=mRNA_P-wetherbeei_contig1095.3.1|Name=mRNA_P-wetherbeei_contig1095.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig1095:4349..4988+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTCGTAAGGTGACTTGCTCGAAATGCGGCAAGCCATCCTGGGCGGG
CTGCGGACAGCACATCGAGAGCGCCTTGTCCGGCGTCGCGGAAGCCGATC
GCTGCCCCGGCTGGCGGAGCGGAAAGTGCACTGCTGCTGGAGGTGGAGAT
GCTGGTGCCAAAACCGGCGCGAAATGCGGACCTTCTTGA
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