mRNA_P-wetherbeei_contig10853.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10853.2.1
Unique NamemRNA_P-wetherbeei_contig10853.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10853.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10853contigP-wetherbeei_contig10853:785..2263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZZ2
PFAMsDENN,uDENN
Model size880
Max annot lvl2759|Eukaryota
KEGG koko:K20161
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.32e-27
EggNOG OGsKOG3569@1|root,KOG3569@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size876
COG categoryA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185887.3386662-CDS-P-wetherbeei_contig10853:784..9341683185887.3386662-CDS-P-wetherbeei_contig10853:784..934Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10853 785..934 +
1683185887.347337-CDS-P-wetherbeei_contig10853:1266..14671683185887.347337-CDS-P-wetherbeei_contig10853:1266..1467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10853 1267..1467 +
1683185887.3547077-CDS-P-wetherbeei_contig10853:1736..22611683185887.3547077-CDS-P-wetherbeei_contig10853:1736..2261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10853 1737..2261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10853.2.1prot_P-wetherbeei_contig10853.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10853 785..2261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10853.2.1

>prot_P-wetherbeei_contig10853.2.1 ID=prot_P-wetherbeei_contig10853.2.1|Name=mRNA_P-wetherbeei_contig10853.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=292bp
WSVGVGGGRGPSDMRFVTTPGTPGGGGFGPPETQMLLVSTPTITSSEQSL
AFMEFAVVGIDPAILSGEAPPLPFGQPTTVLERFPAAADAGGRGFVEGLA
EFCFPGGAEIHLAPEDKAETMYGPHEDRLHVLQFTDASHTTSYGCCIVIT
ERLRRPSAALLVALWRRELERSAARTIQRFAKRWCCGGGLGDCGAGGGGA
TSIGGSNGNMDSNRPLSGRRLAAVMEAILRISPAAQDAHAASGASGKVKY
GLGHLASIVAAAAAAAERAGGGGGAAVGGDGDGAADIGSPGG
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mRNA from alignment at P-wetherbeei_contig10853:785..2263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10853.2.1 ID=mRNA_P-wetherbeei_contig10853.2.1|Name=mRNA_P-wetherbeei_contig10853.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1479bp|location=Sequence derived from alignment at P-wetherbeei_contig10853:785..2263+ (Phaeothamnion wetherbeei SAG_119_79)
TGGTCGGTTGGGGTCGGCGGAGGCCGCGGGCCCAGCGACATGCGCTTCGT
GACGACACCCGGCACGCCCGGCGGCGGCGGCTTCGGGCCGCCGGAGACAC
AGATGCTGCTGGTCAGCACCCCGACGATCACCAGCAGCGAGCAGAGCCTG
GTGAGCGGTGGCGGTTGAGCGGTGACGTCGTTGGCGTGTGTTGTTGGAGG
AGCGTTGGGAGGCGGCGGCGCTTTGTGGTTTCGGAATAGGCGTGGGTAAT
TGCTAGTGATACTATTTCTGGTCTGAGAGGTTGATCGATAGTGTCGTGGG
CTTGAAGGGAAGGCAGCAAAATAACTCTATTCCGACGAGGAGTGTGCGGG
CAGACGTGACGACATCCATCCTGGCGGGAGCCTTGTATCTTTTGCAACCA
CGGCCTGTTGTCTTGGTCATGATGCCCCACTTCACCCTCTCAGTTACTTT
CAAAACCAGTTTTCCCTCCCAATGCATCGCAGGCCTTCATGGAGTTCGCC
GTGGTGGGTATCGACCCGGCCATCCTGTCGGGCGAGGCGCCACCGCTGCC
CTTCGGCCAACCGACGACGGTCCTGGAGCGCTTCCCGGCAGCGGCAGATG
CCGGCGGCCGCGGCTTCGTAGAAGGTCTCGCCGAATTTTGCTTCCCCGGT
GGCGCCGAGATCCACCTGGCACCGGAGGACAAGGTGCGCCGAACGATCAG
TCAGATTCGGTGCATTGTACGTGCTATGCTTACGTTGTCCAGTGGCAGGC
GTGTTGACACACGGCTGCAATCAGAAAGAACTTTTCGAATGCTTTCTTTA
CCGCACTCGTTCGGCGCCGATCGGCCGGCTGCCCGCATTCGTTTTGCCGC
CGCGAATGACATGCAACCGCAAATACCTCATTTCACGTGTCCATCTTAGC
ACCCATGTCCTGTGCCAGCTGCCGCCTCCGCCCTTGTCTGCCCGCCCGCT
AGGCGGAAACGATGTACGGGCCGCACGAGGACCGACTCCACGTGCTGCAG
TTCACCGACGCCTCCCACACCACTTCATACGGCTGCTGCATCGTCATCAC
GGAGCGCCTTCGCCGCCCCAGCGCCGCCCTGCTCGTGGCGCTCTGGCGGC
GTGAGCTGGAGCGCTCGGCGGCGCGCACCATCCAGCGCTTCGCCAAGCGC
TGGTGCTGCGGCGGTGGGCTTGGCGACTGCGGCGCGGGCGGCGGCGGCGC
CACCAGCATCGGTGGCAGCAACGGCAACATGGACTCGAACCGGCCGCTGT
CGGGACGGCGGCTGGCGGCCGTGATGGAGGCGATCCTCCGGATCTCGCCG
GCAGCGCAGGACGCTCACGCAGCGAGCGGTGCGTCGGGCAAAGTAAAGTA
CGGGCTGGGCCACCTTGCCAGCATAGTCGCCGCAGCGGCGGCAGCCGCGG
AGCGGGCTGGCGGCGGCGGCGGCGCCGCTGTGGGTGGCGACGGCGACGGC
GCTGCGGATATTGGCAGCCCGGGCGGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10853:785..2263+

>mRNA_P-wetherbeei_contig10853.2.1 ID=mRNA_P-wetherbeei_contig10853.2.1|Name=mRNA_P-wetherbeei_contig10853.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=876bp|location=Sequence derived from alignment at P-wetherbeei_contig10853:785..2263+ (Phaeothamnion wetherbeei SAG_119_79)
TGGTCGGTTGGGGTCGGCGGAGGCCGCGGGCCCAGCGACATGCGCTTCGT
GACGACACCCGGCACGCCCGGCGGCGGCGGCTTCGGGCCGCCGGAGACAC
AGATGCTGCTGGTCAGCACCCCGACGATCACCAGCAGCGAGCAGAGCCTG
GCCTTCATGGAGTTCGCCGTGGTGGGTATCGACCCGGCCATCCTGTCGGG
CGAGGCGCCACCGCTGCCCTTCGGCCAACCGACGACGGTCCTGGAGCGCT
TCCCGGCAGCGGCAGATGCCGGCGGCCGCGGCTTCGTAGAAGGTCTCGCC
GAATTTTGCTTCCCCGGTGGCGCCGAGATCCACCTGGCACCGGAGGACAA
GGCGGAAACGATGTACGGGCCGCACGAGGACCGACTCCACGTGCTGCAGT
TCACCGACGCCTCCCACACCACTTCATACGGCTGCTGCATCGTCATCACG
GAGCGCCTTCGCCGCCCCAGCGCCGCCCTGCTCGTGGCGCTCTGGCGGCG
TGAGCTGGAGCGCTCGGCGGCGCGCACCATCCAGCGCTTCGCCAAGCGCT
GGTGCTGCGGCGGTGGGCTTGGCGACTGCGGCGCGGGCGGCGGCGGCGCC
ACCAGCATCGGTGGCAGCAACGGCAACATGGACTCGAACCGGCCGCTGTC
GGGACGGCGGCTGGCGGCCGTGATGGAGGCGATCCTCCGGATCTCGCCGG
CAGCGCAGGACGCTCACGCAGCGAGCGGTGCGTCGGGCAAAGTAAAGTAC
GGGCTGGGCCACCTTGCCAGCATAGTCGCCGCAGCGGCGGCAGCCGCGGA
GCGGGCTGGCGGCGGCGGCGGCGCCGCTGTGGGTGGCGACGGCGACGGCG
CTGCGGATATTGGCAGCCCGGGCGGT
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