mRNA_P-wetherbeei_contig21259.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21259.1.1
Unique NamemRNA_P-wetherbeei_contig21259.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: A0A351T5D8_9PROT (Oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T5D8_9PROT)

HSP 1 Score: 338 bits (867), Expect = 2.820e-115
Identity = 168/234 (71.79%), Postives = 196/234 (83.76%), Query Frame = 1
Query:   10 LAGQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAIKAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVDCR 711
            LAGQ+ALVTGASRGIGRATAI LA+ GAH+IA+AR    LE LDD IKA G  DGATLVPLDL DH ALDRLG S+  RWG LD+LVGNAG+LGPITPV HITP+ +  LL +N+TANWRLIR+L PLLK++K GGRA+FVSS AA   KP+WGGYSMSKAALES+VK+WAAEN+ ++LR+NLFNPG TRTEMRAAAMPGEDP  LPTPE VA  MLP L+P+CAV+GE++  +
Sbjct:    7 LAGQLALVTGASRGIGRATAIQLAQRGAHIIALARTSGALEELDDEIKALGQPDGATLVPLDLADHDALDRLGRSIYDRWGKLDMLVGNAGILGPITPVSHITPKNWDALLAVNVTANWRLIRSLEPLLKQAKPGGRAIFVSSSAATKTKPYWGGYSMSKAALESIVKVWAAENSTTALRINLFNPGGTRTEMRAAAMPGEDPSQLPTPEQVAAFMLPYLMPDCAVSGELITFK 240          
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: A0A3C0TSQ4_9PROT (Oxidoreductase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TSQ4_9PROT)

HSP 1 Score: 327 bits (839), Expect = 1.570e-111
Identity = 160/207 (77.29%), Postives = 185/207 (89.37%), Query Frame = 1
Query:   91 AHVIAVARNVAELESLDDAIKAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVDCR 711
            AHVIAVARNV  LESLDDAIK+ G KDGATLVPLDL+DH  + RLG S+  RWG LDILVGNA VLGPITP+EHITP+K++ELLD+N+TANW LIRAL+PLL+ +  GGRAVF++SGAARSAKPFWGGY+MSKAALESLVKIWAAEN +++LR+NLFNPGATRT+MRAAA+PGEDPM+LP PE VAEA+LPLLLPEC  TGE+VD R
Sbjct:    1 AHVIAVARNVDALESLDDAIKSSGVKDGATLVPLDLRDHTGIGRLGQSIEARWGRLDILVGNAAVLGPITPLEHITPEKWRELLDVNVTANWSLIRALSPLLRAASAGGRAVFITSGAARSAKPFWGGYAMSKAALESLVKIWAAENVRTALRINLFNPGATRTDMRAAAIPGEDPMTLPNPEIVAEALLPLLLPECGATGEIVDFR 207          
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: A0A8I1RP64_9PROT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A8I1RP64_9PROT)

HSP 1 Score: 270 bits (690), Expect = 2.010e-88
Identity = 146/234 (62.39%), Postives = 175/234 (74.79%), Query Frame = 1
Query:   10 LAGQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAIKAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVDCR 711
            L  +IALVTGASRGIGRA A+ LA +GAHVIA+AR V  LE LDD I+  G    ATLVPL+LKD AALDRLGAS+  RWG LD  +GNAG LG +TP+ H+ P+ FQELLDIN+TANWRLIR+L PLLK+S  G RA+F+SS  AR  + FWGGY+MSKAALESL   +AAE   S++RVNLFNPG  RT MRA AMPGEDP +LP P  +A  ++ LL P C   GE+++ R
Sbjct:    5 LENRIALVTGASRGIGRAAALALAAQGAHVIAIARTVGGLEELDDEIRKSG--GSATLVPLNLKDFAALDRLGASIFERWGRLDAFLGNAGTLGVLTPLGHLEPKVFQELLDINVTANWRLIRSLDPLLKQSDAG-RALFISSTVARKPRAFWGGYAMSKAALESLALTYAAECEGSAVRVNLFNPGGVRTAMRARAMPGEDPSTLPRPADIAPVIVDLLSPACTRHGELINYR 235          
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: A0A7Y8MP80_9PROT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8MP80_9PROT)

HSP 1 Score: 265 bits (676), Expect = 2.970e-86
Identity = 140/232 (60.34%), Postives = 180/232 (77.59%), Query Frame = 1
Query:   16 GQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAIKAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVDCR 711
            G++ALVTGA+RGIGRA A++LA+ GAHVIA  R    LE LDDAI+  G +  ATLVP+DL+ H A+DRLG ++  RW  LDIL+GNAGVLGP+TPV  I P+ F ELLD+NLTAN+RLIR++ PLL+ S+ G RA+F++SGAA   +P+WGGY+M+KAALE LV  +AAE A S ++VNL+NPGATRT MRA AMPGEDP SLPT ETVA  ++ +L  + A +GE++  R
Sbjct:    9 GRLALVTGATRGIGRAVALLLAQGGAHVIATGRTAGALEELDDAIQKSG-RGPATLVPMDLRQHEAIDRLGGTIFERWQRLDILIGNAGVLGPLTPVAQIEPKAFAELLDVNLTANYRLIRSMDPLLRLSRDG-RALFLTSGAAGRHRPYWGGYAMTKAALEDLVLTYAAEAASSGVKVNLYNPGATRTAMRAKAMPGEDPASLPTAETVAAHLVGVLTRDDARSGEIIAFR 238          
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: A0A6N6VHF2_9HYPH (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VHF2_9HYPH)

HSP 1 Score: 264 bits (675), Expect = 4.210e-86
Identity = 140/235 (59.57%), Postives = 173/235 (73.62%), Query Frame = 1
Query:    7 RLAGQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAIKAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVDCR 711
            RL G++A++TGASRGIGRA A+  A EGAHVI VAR V  LE +DD I+  G K  ATLVPLDL D  ALDRLGA++  RWG LDILVGNAG LG +TPV H+  + + ++++ N+TANWRLIR+  PLLK S  G RA+FV+SGAA+ AKPFWGGY+MSKAALE+LVK WAAE A +S+R NL +PGATRT MR  AMPGEDP +L  P  +    + L +  C   GEVV+ +
Sbjct:    4 RLQGRLAVITGASRGIGRAVALGFAAEGAHVILVARTVGGLEEVDDEIRKIGGK--ATLVPLDLTDFDALDRLGATIFERWGKLDILVGNAGTLGVLTPVSHLEVKAWDKIVNTNITANWRLIRSFEPLLKRSDAG-RAIFVTSGAAQKAKPFWGGYAMSKAALEALVKTWAAECANTSIRANLLSPGATRTAMRKQAMPGEDPSALTKPADLVPLFIELAMTSCERNGEVVEYK 235          
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: UPI0018C5C2B3 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C5C2B3)

HSP 1 Score: 263 bits (672), Expect = 1.330e-85
Identity = 141/230 (61.30%), Postives = 179/230 (77.83%), Query Frame = 1
Query:   10 LAGQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAIKAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEV 699
            LAGQ+A+VTGASRG+GRATA+ LA+EGAH+IA AR    LE LDDAIKA G+   ATLVP+D+ D+A +DRLGA++  RW  LDILVGNAGVLG +TPV H+ P+ + E++ +N+TAN+RL+R+L PLL+ S+ G RAVFV+SGAA  A  FWGGYS+SKAALE++VK +A E   S +R NLF+PG TRT MRA+AMPGEDP SLP+PE VA  ++P+   E   TG V
Sbjct:    5 LAGQVAVVTGASRGLGRATALALAQEGAHIIATARTQGGLEELDDAIKAAGST--ATLVPMDVTDYAGIDRLGAAIFERWKKLDILVGNAGVLGKLTPVPHLDPKVWDEVMAVNVTANYRLLRSLDPLLRLSEAG-RAVFVTSGAAHKAPAFWGGYSVSKAALEAMVKTYAHEMETSPVRANLFSPGPTRTRMRASAMPGEDPNSLPSPEEVAAQIVPMCKAEFEDTGAV 231          
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: A0A2A5ERE7_9HYPH (Oxidoreductase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ERE7_9HYPH)

HSP 1 Score: 262 bits (670), Expect = 2.420e-85
Identity = 137/233 (58.80%), Postives = 176/233 (75.54%), Query Frame = 1
Query:    7 RLAGQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAIKAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVD 705
            RL  ++AL+TGASRG+GRA A+ +A EGAHVI +AR V  LE +DD I+  G K  ATLVPLDL D+A LDRLGA++  RWG LDIL+GNAG+LGP+TPV HI+P+ + + + +N+TAN+RLIR+L PLL+ S  G RAVFV+SGAA   +P+WG YS++KAAL++LVK WAAE  ++ LRVNL +PG   T+MRA AMPGEDP +LP P  VA   + L  PEC   G+VVD
Sbjct:    4 RLHDRLALITGASRGLGRAAALAMAAEGAHVILLARTVGGLEEVDDEIQKAGGK--ATLVPLDLTDYAGLDRLGATIFERWGKLDILIGNAGILGPLTPVGHISPEDWDKAIAVNVTANYRLIRSLDPLLRRSDAG-RAVFVTSGAAHKCRPYWGPYSVTKAALQALVKTWAAETMQTELRVNLLSPGPIATKMRAKAMPGEDPATLPQPADVAPLFVELASPECMRHGDVVD 233          
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: A0A7W2GXH7_9HYPH (SDR family NAD(P)-dependent oxidoreductase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A7W2GXH7_9HYPH)

HSP 1 Score: 260 bits (664), Expect = 2.480e-84
Identity = 137/232 (59.05%), Postives = 174/232 (75.00%), Query Frame = 1
Query:   10 LAGQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAIKAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVD 705
            LA +IALVTGA+RGIG A A+ LAR GAHV+A+ R    LE LDD+I+A G    ATLVP+D+ D+ A+DRLG ++  R+G LD+ VGNAG+LGP+TPV H+ P+ + + L +NLTAN+R +R+L PLL+ S T GRAVFVSSGAA  A+ +WG YS++KAALE L + WAAE+   +L+VNLFNPG  RT MRA A PGEDP +LPTPE  A A+LPL LP CA TG + D
Sbjct:    6 LADRIALVTGATRGIGAAIALDLARAGAHVVAIGRTQGALEELDDSIQAAG--GSATLVPMDVTDYDAIDRLGGALYERYGHLDVFVGNAGILGPLTPVGHVDPKDWDQALCVNLTANYRFVRSLDPLLRLS-TAGRAVFVSSGAAHKARAYWGPYSVTKAALEVLARTWAAESLTGNLKVNLFNPGPIRTRMRAKAFPGEDPETLPTPEAAAAALLPLCLPACADTGRLYD 234          
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: UPI0012EB70AC (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Salaquimonas pukyongi TaxID=2712698 RepID=UPI0012EB70AC)

HSP 1 Score: 259 bits (662), Expect = 3.960e-84
Identity = 147/236 (62.29%), Postives = 176/236 (74.58%), Query Frame = 1
Query:    1 MQRLAGQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAI-KAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVD 705
            M+RL  +IALVTGASRGIG  TA+ LAREGAHVIA+AR V  LE LDDAI +A GT   ATLVPLD+ D+ ALDRLGAS+  RWG LDI + NAG+LG ++P+ H  P+ F+ +L  NLTANWRLIR+L PLLK S  G RA+ VSSGAA+S K FWG YS+SKA LE+L K WAAE+A S+L+VNL NPGAT T MRA AMPGE+P +LP    VAE  + L+L E  V G + D
Sbjct:    2 MKRLQDKIALVTGASRGIGYFTALALAREGAHVIALARTVGGLEELDDAIGEAGGT---ATLVPLDITDYDALDRLGASIDERWGRLDIFIANAGILGGLSPLGHFEPKTFERVLAANLTANWRLIRSLDPLLKASDAG-RALLVSSGAAQSCKSFWGAYSVSKAGLEALGKTWAAESANSNLKVNLVNPGATATAMRAQAMPGENPETLPHAREVAETFVALVLAENTVNGGLFD 233          
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Match: A0A259K5N7_9HYPH (Oxidoreductase n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A259K5N7_9HYPH)

HSP 1 Score: 259 bits (662), Expect = 4.990e-84
Identity = 135/232 (58.19%), Postives = 171/232 (73.71%), Query Frame = 1
Query:   10 LAGQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAIKAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPITPVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAARSAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAAMPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVD 705
            LA +IALVTGA+RGIG ATA+ LA+ GAHVI V R    LE +DDAIKA G    ATLVP+D+ D+ A+DRLG ++  RWG LD+ VGNAG+LGP+TP+ H+ P+ + + L +NLTAN+R +R+L PLLK S T GRAV VSSGAA  A+ +WG Y+++KAAL+ L + WAAE+   +L+VNLFNPG  RT MRA A PGEDP +LP PE  AEA+L L LP C  TG+  D
Sbjct:    6 LADRIALVTGATRGIGAATALALAKAGAHVIVVGRTDGALEEVDDAIKAEG--GSATLVPMDVTDYEAIDRLGGAIYQRWGHLDVFVGNAGILGPVTPLGHVDPKDWDQALSVNLTANYRFVRSLDPLLKLS-TAGRAVLVSSGAAHKARAYWGPYAVTKAALDVLGRTWAAESVSGNLKVNLFNPGPIRTRMRAKAFPGEDPQTLPAPEEAAEALLSLCLPSCEETGKYYD 234          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21259.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351T5D8_9PROT2.820e-11571.79Oxidoreductase n=1 Tax=Alphaproteobacteria bacteri... [more]
A0A3C0TSQ4_9PROT1.570e-11177.29Oxidoreductase (Fragment) n=1 Tax=Alphaproteobacte... [more]
A0A8I1RP64_9PROT2.010e-8862.39SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A7Y8MP80_9PROT2.970e-8660.34SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A6N6VHF2_9HYPH4.210e-8659.57SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI0018C5C2B31.330e-8561.30SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A2A5ERE7_9HYPH2.420e-8558.80Oxidoreductase n=1 Tax=Rhodobiaceae bacterium TaxI... [more]
A0A7W2GXH7_9HYPH2.480e-8459.05SDR family NAD(P)-dependent oxidoreductase n=2 Tax... [more]
UPI0012EB70AC3.960e-8462.29SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A259K5N7_9HYPH4.990e-8458.19Oxidoreductase n=5 Tax=Hyphomicrobiales TaxID=356 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21259contigP-wetherbeei_contig21259:378..1091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1281779.H009_06697
Preferred nameMA20_27940
PFAMsadh_short
Model size714
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0009056,GO:0016491,GO:0044464,GO:0055114,GO:0071704,GO:1901575
Exons1
Evalue7.92e-85
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MWBC@1224|Proteobacteria,2TTQS@28211|Alphaproteobacteria,4B7Y3@82115|Rhizobiaceae
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
Cds size714
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186220.135076-CDS-P-wetherbeei_contig21259:377..10911683186220.135076-CDS-P-wetherbeei_contig21259:377..1091Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21259 378..1091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21259.1.1prot_P-wetherbeei_contig21259.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21259 378..1091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21259.1.1

>prot_P-wetherbeei_contig21259.1.1 ID=prot_P-wetherbeei_contig21259.1.1|Name=mRNA_P-wetherbeei_contig21259.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp
MQRLAGQIALVTGASRGIGRATAIMLAREGAHVIAVARNVAELESLDDAI
KAFGTKDGATLVPLDLKDHAALDRLGASVLGRWGALDILVGNAGVLGPIT
PVEHITPQKFQELLDINLTANWRLIRALAPLLKESKTGGRAVFVSSGAAR
SAKPFWGGYSMSKAALESLVKIWAAENAKSSLRVNLFNPGATRTEMRAAA
MPGEDPMSLPTPETVAEAMLPLLLPECAVTGEVVDCR*
back to top

mRNA from alignment at P-wetherbeei_contig21259:378..1091+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21259.1.1 ID=mRNA_P-wetherbeei_contig21259.1.1|Name=mRNA_P-wetherbeei_contig21259.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig21259:378..1091+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAAGACTTGCTGGACAAATTGCGTTAGTCACCGGCGCCTCGCGGGG CATTGGCCGCGCAACAGCGATCATGCTGGCGCGTGAGGGCGCGCATGTGA TTGCGGTTGCGCGCAATGTGGCCGAACTGGAATCATTGGATGACGCTATC AAGGCGTTTGGGACAAAGGATGGCGCCACGCTTGTGCCGCTGGATTTGAA GGACCATGCGGCCCTTGACCGGCTTGGCGCATCGGTCCTTGGGCGTTGGG GCGCACTGGATATTCTGGTGGGCAATGCCGGGGTTCTGGGACCGATCACG CCGGTCGAGCATATTACGCCGCAAAAATTTCAGGAACTGCTGGATATCAA TCTGACTGCAAACTGGCGGTTGATCCGCGCCCTTGCGCCGCTGTTAAAGG AATCAAAAACCGGCGGACGCGCCGTATTTGTAAGCTCCGGCGCGGCGCGC AGCGCAAAACCTTTCTGGGGCGGTTATTCCATGAGCAAGGCGGCGCTCGA AAGCCTCGTGAAAATCTGGGCGGCCGAAAACGCCAAATCATCCCTGCGCG TAAACCTGTTCAATCCCGGCGCTACCCGCACCGAAATGCGCGCCGCCGCC ATGCCCGGCGAAGACCCGATGAGTTTGCCCACGCCGGAAACCGTGGCCGA GGCAATGCTGCCGCTTTTGTTGCCGGAGTGTGCCGTTACGGGCGAAGTCG TTGATTGCCGGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig21259:378..1091+

>mRNA_P-wetherbeei_contig21259.1.1 ID=mRNA_P-wetherbeei_contig21259.1.1|Name=mRNA_P-wetherbeei_contig21259.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig21259:378..1091+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAAGACTTGCTGGACAAATTGCGTTAGTCACCGGCGCCTCGCGGGG
CATTGGCCGCGCAACAGCGATCATGCTGGCGCGTGAGGGCGCGCATGTGA
TTGCGGTTGCGCGCAATGTGGCCGAACTGGAATCATTGGATGACGCTATC
AAGGCGTTTGGGACAAAGGATGGCGCCACGCTTGTGCCGCTGGATTTGAA
GGACCATGCGGCCCTTGACCGGCTTGGCGCATCGGTCCTTGGGCGTTGGG
GCGCACTGGATATTCTGGTGGGCAATGCCGGGGTTCTGGGACCGATCACG
CCGGTCGAGCATATTACGCCGCAAAAATTTCAGGAACTGCTGGATATCAA
TCTGACTGCAAACTGGCGGTTGATCCGCGCCCTTGCGCCGCTGTTAAAGG
AATCAAAAACCGGCGGACGCGCCGTATTTGTAAGCTCCGGCGCGGCGCGC
AGCGCAAAACCTTTCTGGGGCGGTTATTCCATGAGCAAGGCGGCGCTCGA
AAGCCTCGTGAAAATCTGGGCGGCCGAAAACGCCAAATCATCCCTGCGCG
TAAACCTGTTCAATCCCGGCGCTACCCGCACCGAAATGCGCGCCGCCGCC
ATGCCCGGCGAAGACCCGATGAGTTTGCCCACGCCGGAAACCGTGGCCGA
GGCAATGCTGCCGCTTTTGTTGCCGGAGTGTGCCGTTACGGGCGAAGTCG
TTGATTGCCGGTAG
back to top