mRNA_P-wetherbeei_contig2121.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2121.3.1
Unique NamemRNA_P-wetherbeei_contig2121.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2121.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2121contigP-wetherbeei_contig2121:4146..5153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1010
Hectar predicted targeting categoryother localisation
Exons1
Cds size1002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186219.1575801-UTR-P-wetherbeei_contig2121:4145..41511683186219.1575801-UTR-P-wetherbeei_contig2121:4145..4151Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2121 4146..4151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186219.1692069-CDS-P-wetherbeei_contig2121:4151..51531683186219.1692069-CDS-P-wetherbeei_contig2121:4151..5153Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2121 4152..5153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2121.3.1prot_P-wetherbeei_contig2121.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2121 4152..5153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2121.3.1

>prot_P-wetherbeei_contig2121.3.1 ID=prot_P-wetherbeei_contig2121.3.1|Name=mRNA_P-wetherbeei_contig2121.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
MVLPSLPPMRLGTDEARAGPPLSDADFSRLVADVRTAAKSVAVATAASGA
ATNGGRGRGDGGGGGSAAPAAGDVAESGRSGCGRGRERRLRIDPRVFAPL
LRAVLENEGDRALHRLLVEHPLLQPPLGQQQSAGGPQRPWWHVSAATTPS
ARAGGGDDGVGAAGSARFVGGEKGGGGGGDGGRSNGKGGRGKGKRARARS
KSGGGNAAGGSGSNSSRGGGGGSIGGGSGVAGAGQVENDDGGGGTSAAGE
DATTAAAAAAAPLDVTRELTRLAAYAAAGASNGASRSGSVVSSGGGGISS
SSSSRGDGNGGHVTVLEAELLLAKAFLCSLDDNG
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mRNA from alignment at P-wetherbeei_contig2121:4146..5153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2121.3.1 ID=mRNA_P-wetherbeei_contig2121.3.1|Name=mRNA_P-wetherbeei_contig2121.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig2121:4146..5153+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGTGATGGTCCTGCCATCGCTGCCGCCGATGCGGCTCGGCACTGATGA
GGCCCGCGCCGGGCCGCCGCTCTCCGACGCCGACTTCTCTCGCCTCGTTG
CGGACGTTCGGACGGCGGCGAAGAGCGTTGCAGTCGCCACCGCTGCCTCC
GGGGCAGCGACCAATGGTGGTCGCGGCAGGGGCGACGGCGGTGGCGGAGG
CTCAGCGGCGCCGGCGGCAGGAGACGTCGCAGAGAGCGGCCGCAGTGGCT
GCGGCCGCGGCCGGGAGCGGCGGCTCCGCATTGACCCGCGGGTGTTTGCC
CCCCTGCTGCGGGCGGTGCTGGAGAACGAAGGCGACAGGGCGCTGCACCG
CCTCCTCGTGGAGCACCCCCTTCTACAGCCGCCGTTGGGCCAGCAGCAGT
CAGCCGGCGGGCCGCAGCGGCCGTGGTGGCATGTTTCGGCGGCAACGACG
CCGTCGGCTCGGGCAGGAGGCGGCGACGATGGCGTCGGCGCGGCAGGCTC
TGCACGCTTTGTGGGTGGTGAAAAGGGCGGCGGCGGCGGCGGCGATGGCG
GCAGGTCCAATGGCAAAGGCGGACGAGGTAAAGGCAAGCGAGCGAGGGCC
CGGAGTAAGTCTGGCGGGGGCAACGCCGCCGGTGGCAGCGGCAGCAACAG
CAGTAGAGGCGGTGGCGGCGGCAGCATCGGCGGCGGTTCCGGCGTAGCCG
GCGCCGGTCAGGTTGAAAATGATGACGGCGGAGGGGGCACTTCTGCAGCC
GGCGAAGACGCTACAACCGCTGCCGCCGCCGCCGCTGCGCCGCTCGATGT
CACGCGGGAGCTTACTCGCCTCGCCGCCTACGCCGCGGCCGGCGCCTCGA
ACGGCGCGTCCCGCAGCGGTTCTGTCGTGTCCAGCGGCGGTGGCGGCATC
AGCAGCAGCAGCAGCAGCCGGGGAGATGGCAACGGCGGCCACGTGACTGT
GCTGGAGGCCGAGCTCCTGTTGGCAAAGGCGTTCCTCTGCTCCTTGGACG
ACAACGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2121:4146..5153+

>mRNA_P-wetherbeei_contig2121.3.1 ID=mRNA_P-wetherbeei_contig2121.3.1|Name=mRNA_P-wetherbeei_contig2121.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig2121:4146..5153+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCTGCCATCGCTGCCGCCGATGCGGCTCGGCACTGATGAGGCCCG
CGCCGGGCCGCCGCTCTCCGACGCCGACTTCTCTCGCCTCGTTGCGGACG
TTCGGACGGCGGCGAAGAGCGTTGCAGTCGCCACCGCTGCCTCCGGGGCA
GCGACCAATGGTGGTCGCGGCAGGGGCGACGGCGGTGGCGGAGGCTCAGC
GGCGCCGGCGGCAGGAGACGTCGCAGAGAGCGGCCGCAGTGGCTGCGGCC
GCGGCCGGGAGCGGCGGCTCCGCATTGACCCGCGGGTGTTTGCCCCCCTG
CTGCGGGCGGTGCTGGAGAACGAAGGCGACAGGGCGCTGCACCGCCTCCT
CGTGGAGCACCCCCTTCTACAGCCGCCGTTGGGCCAGCAGCAGTCAGCCG
GCGGGCCGCAGCGGCCGTGGTGGCATGTTTCGGCGGCAACGACGCCGTCG
GCTCGGGCAGGAGGCGGCGACGATGGCGTCGGCGCGGCAGGCTCTGCACG
CTTTGTGGGTGGTGAAAAGGGCGGCGGCGGCGGCGGCGATGGCGGCAGGT
CCAATGGCAAAGGCGGACGAGGTAAAGGCAAGCGAGCGAGGGCCCGGAGT
AAGTCTGGCGGGGGCAACGCCGCCGGTGGCAGCGGCAGCAACAGCAGTAG
AGGCGGTGGCGGCGGCAGCATCGGCGGCGGTTCCGGCGTAGCCGGCGCCG
GTCAGGTTGAAAATGATGACGGCGGAGGGGGCACTTCTGCAGCCGGCGAA
GACGCTACAACCGCTGCCGCCGCCGCCGCTGCGCCGCTCGATGTCACGCG
GGAGCTTACTCGCCTCGCCGCCTACGCCGCGGCCGGCGCCTCGAACGGCG
CGTCCCGCAGCGGTTCTGTCGTGTCCAGCGGCGGTGGCGGCATCAGCAGC
AGCAGCAGCAGCCGGGGAGATGGCAACGGCGGCCACGTGACTGTGCTGGA
GGCCGAGCTCCTGTTGGCAAAGGCGTTCCTCTGCTCCTTGGACGACAACG
GT
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