mRNA_P-wetherbeei_contig21142.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21142.1.1
Unique NamemRNA_P-wetherbeei_contig21142.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: A0A3D2W044_9PROT (Uncharacterized protein n=1 Tax=Hyphomonadaceae bacterium TaxID=2026748 RepID=A0A3D2W044_9PROT)

HSP 1 Score: 145 bits (367), Expect = 9.890e-43
Identity = 77/124 (62.10%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    4 MSLLVDNMQWVLLACGLLTFSMIQAVFAPRATMRAYFGETVESPASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALFAAYLTA 375
            MS +VDNMQW++LA GLLT +M QAVFAPRA   A FGE +   A+ L+ RNWG LI  GG +L+Y AF PE R + LIF GAGK +FI LVL+ G  FL++QAG+AV+LDS+MVALFAAYL A
Sbjct:    1 MSFIVDNMQWIMLASGLLTLTMAQAVFAPRAAALAIFGEDISGAAAELVVRNWGGLITGGGAMLIYAAFNPEWRPLVLIFTGAGKAMFIVLVLAHGGKFLQRQAGIAVMLDSVMVALFAAYLAA 124          
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: A0A7S9GJM6_9BURK (Uncharacterized protein n=1 Tax=Kinneretia sp. DAIF2 TaxID=2714952 RepID=A0A7S9GJM6_9BURK)

HSP 1 Score: 122 bits (306), Expect = 2.140e-33
Identity = 68/127 (53.54%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    4 MSLLVDNMQWVLLACGLLTFSMIQAVFAPRATMRAYFGETVES-PASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALFAAYLTATR 381
            M+ LV  M+W++LA GLLT +M+QA  AP A +RA FGE +E+ P + ++ RNWGALIA  G +LVY AF P+ R + L+  G  KLVFIAL+L  G  +L  QAGLA+ +D+LMV LFAAYL   R
Sbjct:    1 MAWLVARMKWIMLASGLLTLTMLQAAIAPAAALRALFGEAIEAGPLAEIVVRNWGALIALIGAMLVYGAFRPQVRGLVLVVAGLSKLVFIALMLGLGGRYLGHQAGLAIAIDALMVLLFAAYLLTGR 127          
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: UPI0015581ED3 (hypothetical protein n=1 Tax=Permianibacter fluminis TaxID=2738515 RepID=UPI0015581ED3)

HSP 1 Score: 116 bits (290), Expect = 5.890e-31
Identity = 60/126 (47.62%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 MSLLVDNMQWVLLACGLLTFSMIQAVFAPRATMRAYFGETVESPASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALFAAYLTATR 381
            MS  + N +W +L  GLLT +M+QA FAP+A +R+ FG+++E P + ++ RNWGALIA  G +L+Y AF P  R + L   G  K+VFI+L+L+ G  +L K  G+AV++DSLM+ LF AYL  +R
Sbjct:    1 MSWFIRNFKWAMLVSGLLTLTMVQAAFAPQAALRSTFGDSLEGPLAEIVVRNWGALIALIGAMLIYGAFRPHVRRLVLAVAGTSKVVFISLILTYGTQYLGK-VGIAVIVDSLMIVLFTAYLVVSR 125          
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: A0A317HMB6_9BACT (Uncharacterized protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A317HMB6_9BACT)

HSP 1 Score: 114 bits (286), Expect = 2.600e-30
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 1
Query:    4 MSLLVDNMQWVLLACGLLTFSMIQAVFAPRATMRAYFGETVESPASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALFAAYLTATR 381
            M  +V N++W+++  G LT +MI A  AP A +R+ FGET+++P + LI RNWGALI   G +L+Y AF P  R + L+     K VFIALVLS G  +L  QAG+AVV+D LM+ LFA YL A R
Sbjct:    1 MGWIVANIRWIMIVSGTLTATMIYAAIAPDAALRSTFGETLDAPLAQLIVRNWGALIGLVGAMLIYGAFDPPGRPLILLVASCSKAVFIALVLSHGTRYLGNQAGMAVVIDLLMIVLFAWYLLAVR 126          
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: UPI0004765EE2 (hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI0004765EE2)

HSP 1 Score: 107 bits (267), Expect = 1.850e-27
Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    4 MSLLVDNMQWVLLACGLLTFSMIQAVFAPRATMRAYFGETVESPASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALFAAYLTATR 381
            M+LLV  M+WV+L  G LT +M  A   P+A + + FG  ++ P + ++ RNWGALIA  G +L+Y AF P +R + L   G  KL+FI LVL  G  +L +QAGLA+ +D +MV LF +YL A R
Sbjct:    1 MNLLVAKMKWVMLVSGALTCTMFYAAVDPQAALNSMFGAALQGPLAEIVVRNWGALIALVGAMLIYGAFDPPSRPLVLTVAGLSKLIFIGLVLFYGTQYLGQQAGLAIAIDLVMVVLFVSYLVAVR 126          
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: A0A1I3VHH2_9HYPH (Uncharacterized protein n=2 Tax=Mesorhizobium albiziae TaxID=335020 RepID=A0A1I3VHH2_9HYPH)

HSP 1 Score: 104 bits (260), Expect = 1.740e-26
Identity = 53/118 (44.92%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    4 MSLLVDNMQWVLLACGLLTFSMIQAVFAPRATMRAYFGETVESPASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALF 357
            M L+V    W+++A GL+T SM+QAVFAPRA +++ FGE +E P + ++ RNWG LI   G+ L+Y           L+F GA KL FIALVL++G+ +L ++AG+A+ +D++ V LF
Sbjct:    1 MELIVRFSGWIMIASGLITASMVQAVFAPRAALQSMFGEAIEGPLAEIVVRNWGVLITLVGIALIYGGISSSHTVPILLFAGASKLAFIALVLAQGRRYLSQRAGVAIAIDAVFVLLF 118          
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: UPI001181F795 (hypothetical protein n=1 Tax=Shewanella donghaensis TaxID=238836 RepID=UPI001181F795)

HSP 1 Score: 103 bits (258), Expect = 3.810e-26
Identity = 55/126 (43.65%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 MSLLVDNMQWVLLACGLLTFSMIQAVFAPRATMRAYFGETVESPASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALFAAYLTATR 381
            M L+++N++W++L  GLLT SMI AVFAP A + + FGE +  P + ++ R+WG LI   G+LL+Y AF P  R+++L+ VG  K+VF+ LVL  G  +++K A + ++LDS+ + LFA YL+  +
Sbjct:    1 MKLIINNIKWIMLISGLLTCSMILAVFAPEAALISMFGEALTEPVAQVVVRSWGFLIFLMGVLLIYGAFKPMYRNLSLVIVGLSKIVFVLLVLIFGAQYVEK-AAVTLILDSIFITLFALYLSKVK 125          
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: A0A7C3LHN1_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C3LHN1_9BACT)

HSP 1 Score: 103 bits (257), Expect = 5.720e-26
Identity = 57/126 (45.24%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    4 MSLLVDNMQWVLLACGLLTFSMIQAVFAPRATMRAYFGETVESPASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALFAAYLTATR 381
            M+ L  N++WV+L  G+LT +M  A  AP+A + + FGET++ P + ++ RNWGALI   G++L++ AF P  R++AL   G  KLVF ALVLS G  +L  QAG+A+ +D + V +FA YL   R
Sbjct:    1 MNFLERNIKWVMLVSGVLTCTMAYAAIAPQAALLSTFGETLQGPLAEVVVRNWGALITLVGVMLIWGAFDPGLRTMALTVAGISKLVFAALVLSHGGRYLGHQAGIAIAVDLVWVVVFAWYLLGAR 126          
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: A0A2V8J269_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8J269_9BACT)

HSP 1 Score: 100 bits (249), Expect = 9.280e-25
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   49 GLLTFSMIQAVFAPRATMRAYFGETVESPASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALFAAYLTATR 381
            G+LT +M+ A  AP A +R+ FGE+V  P + ++ RNWGALIA  G +L+Y A  P  R +AL   GA K +F+ALVLS G  FL  QAG+AV+ D L + +FAAYL + R
Sbjct:    5 GVLTMTMVYASLAPEAALRSTFGESVSGPVADIVVRNWGALIALVGAMLIYGARKPPVRPMALTVAGASKAIFVALVLSHGGRFLGYQAGIAVLSDVLWIMVFAAYLLSVR 115          
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Match: A0A1W9IK31_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium HN_bin10 TaxID=1827386 RepID=A0A1W9IK31_9PROT)

HSP 1 Score: 100 bits (248), Expect = 1.180e-24
Identity = 55/112 (49.11%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   34 VLLACGLLTFSMIQAVFAPRATMRAYFGETVESPASVLITRNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFLKKQAGLAVVLDSLMVALFAAYL 369
            V++  GLLT +M+    AP A M+++FGE VES A  ++  NWG LI   G LL+Y A +P +R +AL+  GA K+ F+ L+LS+GQ FL    G AV++DS MV LFAAYL
Sbjct:    9 VMIVSGLLTLTMLYTAIAPSAAMQSFFGEGVESRAVSIVVANWGILIGLMGALLIYGALHPPSRKLALVVAGASKIAFVGLILSQGQLFLDGL-GAAVIIDSAMVVLFAAYL 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2W044_9PROT9.890e-4362.10Uncharacterized protein n=1 Tax=Hyphomonadaceae ba... [more]
A0A7S9GJM6_9BURK2.140e-3353.54Uncharacterized protein n=1 Tax=Kinneretia sp. DAI... [more]
UPI0015581ED35.890e-3147.62hypothetical protein n=1 Tax=Permianibacter flumin... [more]
A0A317HMB6_9BACT2.600e-3050.00Uncharacterized protein n=1 Tax=Blastocatellia bac... [more]
UPI0004765EE21.850e-2746.03hypothetical protein n=1 Tax=Pseudanabaena sp. PCC... [more]
A0A1I3VHH2_9HYPH1.740e-2644.92Uncharacterized protein n=2 Tax=Mesorhizobium albi... [more]
UPI001181F7953.810e-2643.65hypothetical protein n=1 Tax=Shewanella donghaensi... [more]
A0A7C3LHN1_9BACT5.720e-2645.24Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A2V8J269_9BACT9.280e-2549.55Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A1W9IK31_9PROT1.180e-2449.11Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21142contigP-wetherbeei_contig21142:296..679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog316274.Haur_1892
Model size384
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.26e-29
EggNOG OGs2CWE5@1|root,32SZI@2|Bacteria
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186217.7188976-UTR-P-wetherbeei_contig21142:295..2981683186217.7188976-UTR-P-wetherbeei_contig21142:295..298Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig21142 296..298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186217.7301779-CDS-P-wetherbeei_contig21142:298..6791683186217.7301779-CDS-P-wetherbeei_contig21142:298..679Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21142 299..679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21142.1.1prot_P-wetherbeei_contig21142.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21142 299..679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21142.1.1

>prot_P-wetherbeei_contig21142.1.1 ID=prot_P-wetherbeei_contig21142.1.1|Name=mRNA_P-wetherbeei_contig21142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MSLLVDNMQWVLLACGLLTFSMIQAVFAPRATMRAYFGETVESPASVLIT
RNWGALIAAGGLLLVYVAFYPEARSVALIFVGAGKLVFIALVLSKGQAFL
KKQAGLAVVLDSLMVALFAAYLTATR*
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mRNA from alignment at P-wetherbeei_contig21142:296..679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21142.1.1 ID=mRNA_P-wetherbeei_contig21142.1.1|Name=mRNA_P-wetherbeei_contig21142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig21142:296..679+ (Phaeothamnion wetherbeei SAG_119_79)
GCCATGAGCTTGCTTGTCGACAACATGCAGTGGGTCCTGCTCGCCTGCGG CCTGCTTACCTTCAGCATGATCCAGGCGGTGTTTGCCCCTCGTGCGACGA TGCGCGCCTACTTCGGCGAAACCGTCGAGAGCCCGGCGAGCGTCCTGATC ACGCGCAACTGGGGCGCCCTCATAGCCGCCGGCGGCTTGCTGCTGGTGTA TGTGGCTTTCTATCCCGAGGCTCGTTCGGTCGCCCTCATCTTCGTGGGCG CCGGCAAGCTGGTGTTCATCGCGCTGGTGCTGTCGAAGGGGCAGGCCTTC CTGAAGAAACAGGCCGGCCTCGCCGTAGTGCTGGACAGCCTGATGGTCGC GCTCTTCGCCGCCTACCTGACCGCCACGCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21142:296..679+

>mRNA_P-wetherbeei_contig21142.1.1 ID=mRNA_P-wetherbeei_contig21142.1.1|Name=mRNA_P-wetherbeei_contig21142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig21142:296..679+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTTGCTTGTCGACAACATGCAGTGGGTCCTGCTCGCCTGCGGCCT
GCTTACCTTCAGCATGATCCAGGCGGTGTTTGCCCCTCGTGCGACGATGC
GCGCCTACTTCGGCGAAACCGTCGAGAGCCCGGCGAGCGTCCTGATCACG
CGCAACTGGGGCGCCCTCATAGCCGCCGGCGGCTTGCTGCTGGTGTATGT
GGCTTTCTATCCCGAGGCTCGTTCGGTCGCCCTCATCTTCGTGGGCGCCG
GCAAGCTGGTGTTCATCGCGCTGGTGCTGTCGAAGGGGCAGGCCTTCCTG
AAGAAACAGGCCGGCCTCGCCGTAGTGCTGGACAGCCTGATGGTCGCGCT
CTTCGCCGCCTACCTGACCGCCACGCGCTAG
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