mRNA_P-wetherbeei_contig2111.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2111.3.1
Unique NamemRNA_P-wetherbeei_contig2111.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2111.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2111contigP-wetherbeei_contig2111:3286..4287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1002
Hectar predicted targeting categoryother localisation
Exons1
Cds size699
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.6114588-CDS-P-wetherbeei_contig2111:3285..39841683186216.6114588-CDS-P-wetherbeei_contig2111:3285..3984Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2111 3286..3984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186216.6198378-UTR-P-wetherbeei_contig2111:3984..42871683186216.6198378-UTR-P-wetherbeei_contig2111:3984..4287Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2111 3985..4287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2111.3.1prot_P-wetherbeei_contig2111.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2111 3286..3984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2111.3.1

>prot_P-wetherbeei_contig2111.3.1 ID=prot_P-wetherbeei_contig2111.3.1|Name=mRNA_P-wetherbeei_contig2111.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
GGPSSSSAVAGSGSAVAATGGREGGEDGAARWGEGDSSDSDSIPALSPRK
PRRPSKPGAAAAATAAAHSATGGRPAGASPPENPGYGEAGVSSAASAAPA
SVAEPGGSAERPLDDGADDGLENDVPMMTAAEAAAAADEAVAAAVAAAVA
AAEETPSGWTCHSCTFFNAGRSRRCDVCEVSKSKGDAAPDAAAAAGRENR
PPMDEAAAKRRKKEKRREKSNRRFMQDDEGYF*
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mRNA from alignment at P-wetherbeei_contig2111:3286..4287+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2111.3.1 ID=mRNA_P-wetherbeei_contig2111.3.1|Name=mRNA_P-wetherbeei_contig2111.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig2111:3286..4287+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGGGCCCAGCAGCAGCAGTGCTGTTGCCGGCAGCGGCAGTGCAGTCGC
CGCCACCGGGGGCAGGGAGGGTGGCGAGGACGGCGCCGCGCGCTGGGGCG
AGGGCGACAGCTCAGACTCGGACAGCATTCCGGCGCTCTCACCACGCAAG
CCGCGGCGGCCGTCCAAGCCTGGGGCCGCCGCCGCTGCCACCGCCGCTGC
ACACTCTGCAACCGGCGGCCGCCCTGCGGGGGCATCGCCGCCGGAGAATC
CTGGATATGGCGAGGCGGGCGTTTCTTCCGCTGCGTCTGCTGCGCCGGCG
TCGGTGGCAGAGCCGGGCGGCTCGGCGGAGCGGCCCCTGGACGATGGTGC
TGATGACGGGCTGGAGAACGACGTTCCGATGATGACGGCAGCTGAGGCGG
CAGCGGCAGCCGATGAGGCGGTGGCCGCGGCTGTGGCGGCGGCGGTGGCG
GCGGCGGAGGAAACCCCGAGCGGGTGGACCTGTCACAGCTGCACGTTCTT
CAACGCCGGGCGGTCGCGGCGCTGCGATGTATGTGAGGTGTCCAAGAGCA
AAGGCGATGCCGCACCAGACGCCGCCGCCGCGGCCGGCCGGGAGAACCGG
CCGCCGATGGACGAGGCGGCGGCCAAGCGCCGCAAGAAGGAGAAACGCCG
CGAGAAGTCGAACCGGCGCTTCATGCAGGACGACGAGGGCTACTTTTAGG
TCGAGCGTCGGGCAGCGGGCGGTCAGCGGAAACGCTATGTTTGGAGTGGT
GGCGGAAAAGCGGCGGGGCGGGCTCATTTGGGACCCGTGTGCCTCGTTGC
GCTTTATGTGGACGTATCGAAGGCGCTCAGCTTTTATTTGGAAGGTCTAT
TTGGTCGCGGTGTCGCCGGGCCTGAGCCCGCCCGCTGCCTTGTGTCACAA
GCTGGACACGGTCTACTGTACAAAAACGGCCAGAGGCGAGAGAGCGTTGG
CATGAGGACGAATATCACACTTGAATACGAAGCTTATCGCGCATGTAAAA
GC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2111:3286..4287+

>mRNA_P-wetherbeei_contig2111.3.1 ID=mRNA_P-wetherbeei_contig2111.3.1|Name=mRNA_P-wetherbeei_contig2111.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig2111:3286..4287+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGGGCCCAGCAGCAGCAGTGCTGTTGCCGGCAGCGGCAGTGCAGTCGC
CGCCACCGGGGGCAGGGAGGGTGGCGAGGACGGCGCCGCGCGCTGGGGCG
AGGGCGACAGCTCAGACTCGGACAGCATTCCGGCGCTCTCACCACGCAAG
CCGCGGCGGCCGTCCAAGCCTGGGGCCGCCGCCGCTGCCACCGCCGCTGC
ACACTCTGCAACCGGCGGCCGCCCTGCGGGGGCATCGCCGCCGGAGAATC
CTGGATATGGCGAGGCGGGCGTTTCTTCCGCTGCGTCTGCTGCGCCGGCG
TCGGTGGCAGAGCCGGGCGGCTCGGCGGAGCGGCCCCTGGACGATGGTGC
TGATGACGGGCTGGAGAACGACGTTCCGATGATGACGGCAGCTGAGGCGG
CAGCGGCAGCCGATGAGGCGGTGGCCGCGGCTGTGGCGGCGGCGGTGGCG
GCGGCGGAGGAAACCCCGAGCGGGTGGACCTGTCACAGCTGCACGTTCTT
CAACGCCGGGCGGTCGCGGCGCTGCGATGTATGTGAGGTGTCCAAGAGCA
AAGGCGATGCCGCACCAGACGCCGCCGCCGCGGCCGGCCGGGAGAACCGG
CCGCCGATGGACGAGGCGGCGGCCAAGCGCCGCAAGAAGGAGAAACGCCG
CGAGAAGTCGAACCGGCGCTTCATGCAGGACGACGAGGGCTACTTTTAG
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