mRNA_P-wetherbeei_contig20927.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20927.1.1
Unique NamemRNA_P-wetherbeei_contig20927.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20927.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20927contigP-wetherbeei_contig20927:627..1004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1206725.BAFU01000001_gene4968
PFAMsCopC
Model size378
Max annot lvl201174|Actinobacteria
KEGG koko:K07156,ko:K14166
KEGG TC9.B.62.2
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.33e-07
EggNOG OGsCOG2372@1|root,COG2372@2|Bacteria,2GMKG@201174|Actinobacteria,4FYGB@85025|Nocardiaceae
DescriptionCopC domain
Cds size378
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.20556-CDS-P-wetherbeei_contig20927:626..10041683186212.20556-CDS-P-wetherbeei_contig20927:626..1004Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20927 627..1004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20927.1.1prot_P-wetherbeei_contig20927.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20927 627..1004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20927.1.1

>prot_P-wetherbeei_contig20927.1.1 ID=prot_P-wetherbeei_contig20927.1.1|Name=mRNA_P-wetherbeei_contig20927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MRKIRKIDFVAAVLLGVFATPSPVPAQGTPKATFPPDGSTVTGDLQVVRV
EFDEPIDPTMSALELRKGGTQLWLAGVGEGFCDTSSCQLPLGQLEPDDYT
VAFDVITPSGKVMKNQFTFSVGGAD*
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mRNA from alignment at P-wetherbeei_contig20927:627..1004-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20927.1.1 ID=mRNA_P-wetherbeei_contig20927.1.1|Name=mRNA_P-wetherbeei_contig20927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig20927:627..1004- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTAAAATTCGCAAGATTGATTTTGTTGCAGCCGTTCTTCTGGGAGT
TTTCGCAACGCCATCTCCTGTCCCGGCGCAGGGTACGCCTAAAGCAACTT
TTCCGCCCGACGGAAGCACCGTTACGGGCGATTTGCAGGTGGTGCGAGTC
GAGTTTGATGAGCCCATTGATCCCACAATGTCAGCTTTGGAATTGCGCAA
GGGCGGTACCCAACTATGGCTCGCCGGAGTGGGCGAAGGTTTTTGCGATA
CCAGTTCCTGCCAATTGCCTCTGGGCCAGCTTGAGCCCGACGATTATACA
GTGGCATTCGACGTGATCACGCCATCGGGAAAAGTGATGAAAAATCAATT
CACCTTCAGCGTTGGCGGCGCAGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20927:627..1004-

>mRNA_P-wetherbeei_contig20927.1.1 ID=mRNA_P-wetherbeei_contig20927.1.1|Name=mRNA_P-wetherbeei_contig20927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig20927:627..1004- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTAAAATTCGCAAGATTGATTTTGTTGCAGCCGTTCTTCTGGGAGT
TTTCGCAACGCCATCTCCTGTCCCGGCGCAGGGTACGCCTAAAGCAACTT
TTCCGCCCGACGGAAGCACCGTTACGGGCGATTTGCAGGTGGTGCGAGTC
GAGTTTGATGAGCCCATTGATCCCACAATGTCAGCTTTGGAATTGCGCAA
GGGCGGTACCCAACTATGGCTCGCCGGAGTGGGCGAAGGTTTTTGCGATA
CCAGTTCCTGCCAATTGCCTCTGGGCCAGCTTGAGCCCGACGATTATACA
GTGGCATTCGACGTGATCACGCCATCGGGAAAAGTGATGAAAAATCAATT
CACCTTCAGCGTTGGCGGCGCAGACTGA
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