mRNA_P-wetherbeei_contig10805.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10805.2.1
Unique NamemRNA_P-wetherbeei_contig10805.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10805.2.1 vs. uniprot
Match: A0A7S2XVN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVN0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.370e-21
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 QVPCEVPDEYPELWPRLTALAADLVAAASPFLAEQTSPRHFELLGLDVLPDRDGG-CWLMEVNRLPGLASSKQNRAAEDAFYNRM 252
            QVP  +P +YP+L+ R+  L ++++  ASPFLA Q S  HFE LGLD++ D D    WL+EVNRLPGL SSK N+A ED  YN M
Sbjct:  171 QVPTHLPTDYPQLFERMKELYSEVIRVASPFLAVQRSLSHFEFLGLDIMADADASRVWLLEVNRLPGLQSSKSNQAEEDVTYNTM 255
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BLAST of mRNA_P-wetherbeei_contig10805.2.1 vs. uniprot
Match: A0A482RWA3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWA3_9ARCH)

HSP 1 Score: 81.6 bits (200), Expect = 4.820e-16
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 QVPCEVPDEYPELWPRLTALAADLVAAASPFLAEQTSPRHFELLGLDVLPDR--------DGGC----WLMEVNRLPGLASSKQNRAAEDAFYNRMCIDMIRIV 276
            Q+PC +P +YP+++ RL++L A++V AA P+L  Q S RHF+  GLDV+  R        D G      ++E+NRLPGL SS  N  AEDA Y+ M    +RIV
Sbjct:  254 QIPCNLPADYPDVFLRLSSLWAEIVQAARPYLRCQRSRRHFDFYGLDVVCSRPSSAHHNDDSGAVSEVHVIELNRLPGLESSALNTQAEDALYDEMMRQALRIV 357
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BLAST of mRNA_P-wetherbeei_contig10805.2.1 vs. uniprot
Match: W7TQE7_9STRA (Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQE7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.960e-11
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:   64 ADLVAAASPFLAEQTSPRHFELLGLDVLP-------------DRDGGCWLMEVNRLPGLASSKQNRAAEDAFYNRMCIDMIRIVALGSIGG 297
            A +V AA+PFL  Q S  HFEL GLD LP             D+    +LME+NRLPGL SS+QN A ED  Y+ M  +++ +  +  + G
Sbjct:  315 AAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSG 405
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BLAST of mRNA_P-wetherbeei_contig10805.2.1 vs. uniprot
Match: K8Z572_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z572_NANGC)

HSP 1 Score: 51.2 bits (121), Expect = 4.340e-6
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:  118 HFELLGLDVLP-------------DRDGGCWLMEVNRLPGLASSKQNRAAEDAFYN 246
            HFEL GLD LP             D+    +LME+NRLPGL SS+QN A ED  Y+
Sbjct:   61 HFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYD 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10805.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2XVN0_9STRA3.370e-2154.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482RWA3_9ARCH4.820e-1644.23Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7TQE7_9STRA2.960e-1141.76Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis ga... [more]
K8Z572_NANGC4.340e-648.21Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10805contigP-wetherbeei_contig10805:426..955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQ52
Preferred nameTtll2
PFAMsTTL
Model size297
Max annot lvl2759|Eukaryota
KEGG koko:K16608
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.63e-29
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Descriptionprotein polyglycylation
Cds size297
COG categoryS
BRITEko00000,ko01000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185885.4985855-CDS-P-wetherbeei_contig10805:425..5301683185885.4985855-CDS-P-wetherbeei_contig10805:425..530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10805 426..530 +
1683185885.5091705-CDS-P-wetherbeei_contig10805:763..9551683185885.5091705-CDS-P-wetherbeei_contig10805:763..955Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10805 764..955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10805.2.1prot_P-wetherbeei_contig10805.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10805 426..955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10805.2.1

>prot_P-wetherbeei_contig10805.2.1 ID=prot_P-wetherbeei_contig10805.2.1|Name=mRNA_P-wetherbeei_contig10805.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
QVPCEVPDEYPELWPRLTALAADLVAAASPFLAEQTSPRHFELLGLDVLP
DRDGGCWLMEVNRLPGLASSKQNRAAEDAFYNRMCIDMIRIVALGSIGG
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mRNA from alignment at P-wetherbeei_contig10805:426..955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10805.2.1 ID=mRNA_P-wetherbeei_contig10805.2.1|Name=mRNA_P-wetherbeei_contig10805.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=530bp|location=Sequence derived from alignment at P-wetherbeei_contig10805:426..955+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGCCATGCGAGGTCCCCGACGAGTATCCGGAGCTCTGGCCGCGGCT
GACGGCGCTGGCGGCCGACCTCGTCGCCGCTGCATCGCCGTTCTTGGCGG
AGCAGGTGTGAAGCTGCAACCGTTGGATTTGTTTCCATTTCCCCTTCGCT
TGTCTGCATTCTTGTCTTCGGTTTTTCCTCTGTATCGTCGTTTGCAATCA
GGTTGGTACAACCAGGGTGGTGAACAGTGTTGAATGCGTTTTAATGTCGG
GCTAGACCGCTGAGTAATGCTGATGAATACCAAGAAGTATCTTCTGAGGA
ACCGGAGCCAGACTTTCTCTTGAAAACTTCCTCGGCAGACGAGCCCGCGC
CACTTCGAGCTGCTGGGACTCGACGTGCTTCCCGACCGCGACGGCGGCTG
CTGGCTGATGGAAGTCAACCGCCTGCCGGGCCTCGCCAGCTCGAAGCAGA
ACCGCGCCGCGGAAGACGCCTTTTACAATCGCATGTGTATTGACATGATT
CGGATCGTCGCGCTTGGCAGCATCGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10805:426..955+

>mRNA_P-wetherbeei_contig10805.2.1 ID=mRNA_P-wetherbeei_contig10805.2.1|Name=mRNA_P-wetherbeei_contig10805.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig10805:426..955+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTGCCATGCGAGGTCCCCGACGAGTATCCGGAGCTCTGGCCGCGGCT
GACGGCGCTGGCGGCCGACCTCGTCGCCGCTGCATCGCCGTTCTTGGCGG
AGCAGACGAGCCCGCGCCACTTCGAGCTGCTGGGACTCGACGTGCTTCCC
GACCGCGACGGCGGCTGCTGGCTGATGGAAGTCAACCGCCTGCCGGGCCT
CGCCAGCTCGAAGCAGAACCGCGCCGCGGAAGACGCCTTTTACAATCGCA
TGTGTATTGACATGATTCGGATCGTCGCGCTTGGCAGCATCGGCGGC
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