mRNA_P-wetherbeei_contig208.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig208.1.1
Unique NamemRNA_P-wetherbeei_contig208.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: A0A352AHJ1_9CYAN ((2Fe-2S)-binding protein n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352AHJ1_9CYAN)

HSP 1 Score: 252 bits (644), Expect = 3.670e-78
Identity = 118/215 (54.88%), Postives = 156/215 (72.56%), Query Frame = 1
Query:   58 EKDVEQFQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWNDGST-WQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQS-DAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK 696
            E++ E FQW KQWYP+  VDFLD SRPHA+QLLG+++VLW DGS  W+C+EDACPHR+ PLSEGR+ESDG+LLCAYHAWRF  A+G CVSIPQS D     KH  +  +CA +YP    Q +++VWPESG  A   +  + P ++PE+E+     + +V  L+ NIRDLPY WD F EN+ D AHVPVSHHG+VG+RY  A+  +  ++R ++T+
Sbjct:   20 EEEKELFQWTKQWYPVAVVDFLDPSRPHAMQLLGKDIVLWRDGSRQWRCFEDACPHRLVPLSEGRVESDGTLLCAYHAWRF-DAEGNCVSIPQSKDQETEAKHCSNKKSCAVTYPTQERQGLLWVWPESGQAAQVESQLRTPRIIPELEE----GSDKVVQLSWNIRDLPYGWDFFMENIADPAHVPVSHHGIVGSRYKDAKYYDMPNIREISTQ 229          
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: UPI00047934FE (Rieske 2Fe-2S domain-containing protein n=1 Tax=Fischerella sp. PCC 9605 TaxID=1173024 RepID=UPI00047934FE)

HSP 1 Score: 250 bits (638), Expect = 2.900e-77
Identity = 117/215 (54.42%), Postives = 156/215 (72.56%), Query Frame = 1
Query:   58 EKDVEQFQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWNDGS-TWQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQS-DAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK 696
            E++ + FQW KQWYP+  V FLD+SRPHA+QLLG+ LVLW DGS  W+C+ED CPHR+APLSEGR+ESDG+L+CAYHAWRF  ++GKCVSIPQS D     K+  +P +CA +YP    Q +++VW E+GP A   +  + P +VPE+ED     +G+   L+ N+RDLPY WD F ENV D AHVPVSHHG++GNRY  A+  +   +R ++T+
Sbjct:   20 EEEEKIFQWTKQWYPVAVVGFLDSSRPHAMQLLGKNLVLWRDGSGKWRCFEDFCPHRLAPLSEGRVESDGTLMCAYHAWRF-DSEGKCVSIPQSKDQQTEAKNCSNPKSCAVAYPTQERQGLLWVWAEAGPQAQVESQLRTPRIVPELED----DSGKAVQLSWNVRDLPYGWDFFMENVSDPAHVPVSHHGIIGNRYKDAKYYDMIRVREMSTQ 229          
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: A0A6P0S377_9CYAN (Rieske 2Fe-2S domain-containing protein n=2 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0S377_9CYAN)

HSP 1 Score: 249 bits (637), Expect = 4.090e-77
Identity = 116/215 (53.95%), Postives = 153/215 (71.16%), Query Frame = 1
Query:   58 EKDVEQFQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWND-GSTWQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQS-DAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK 696
            EKDVEQFQW KQWYP+   +FLD+SRPHA+QLLG+ LVLW D    W C+++ACPHR+ PLSEGR+ESDG+LLCAYHAWRF G +G+CV IPQS D     KH  +P +CA SYP    Q ++++WPESG      +  + P +VPE+E+     + +V  L  NIRD PY WD + ENV+D AHVP+SHHG++G+RY  AQ L+   +R ++T+
Sbjct:   20 EKDVEQFQWTKQWYPVAVAEFLDSSRPHAIQLLGKNLVLWRDHNKQWHCFDNACPHRLVPLSEGRVESDGTLLCAYHAWRFDG-EGRCVKIPQSKDKETEAKHCANPKSCAISYPTQERQGLVWIWPESGTQGQIESRQRSPRIVPELEE----NSDQVVQLWWNIRDYPYGWDFWMENVLDPAHVPISHHGIMGDRYQHAQYLDMIRIREMSTQ 229          
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: A0A856MM91_9CYAN ((2Fe-2S)-binding protein n=1 Tax=Brasilonema sennae CENA114 TaxID=415709 RepID=A0A856MM91_9CYAN)

HSP 1 Score: 250 bits (638), Expect = 4.340e-77
Identity = 119/209 (56.94%), Postives = 151/209 (72.25%), Query Frame = 1
Query:   76 FQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWNDGS-TWQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQS-DAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK 696
            FQW KQWYP+  V+FLD SRPHA+QLLG+++VLW DGS  W+C+ED CPHR+APLSEGR+E+DG+LLCAYHAWRF  ++G CVSIPQS D     KH  +P +CA ++P    Q +++VW ESGP A + +  + P LVPE+E      A RV  L  NIRDLPY WD F ENV D AHVPVSHHG+VGNRY  A+  +   +R ++T+
Sbjct:   42 FQWTKQWYPVAVVEFLDPSRPHAMQLLGKDIVLWRDGSGKWRCFEDFCPHRLAPLSEGRVEADGTLLCAYHAWRF-DSEGNCVSIPQSLDKQTEAKHCSNPKSCAVAFPTQECQGLLWVWSESGPQAQSESQLRTPRLVPELES----DADRVVHLFWNIRDLPYGWDFFMENVADPAHVPVSHHGIVGNRYKDAKYYDMIRVRQMSTQ 245          
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: A0A8J6SPF2_9CYAN (Rieske 2Fe-2S domain-containing protein n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6SPF2_9CYAN)

HSP 1 Score: 249 bits (636), Expect = 5.770e-77
Identity = 117/217 (53.92%), Postives = 156/217 (71.89%), Query Frame = 1
Query:   52 ADEKDVEQFQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWNDGS-TWQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQS-DAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK 696
            ++E++ E FQW KQWYP+  VDFLD SRPHA+QLLG+++VLW DGS  W+C+ED CPHR+APLSEGR+ESDG+LLCAYHAWRF  ++G CVSIPQS D     KH  +  +CA  YP    Q +++VW ESG +A   + ++ P ++PE+E+     + RV  L  N+RDLPY WD F ENV D AHVPVSHHG+VG+RY  A+  +   +R ++T+
Sbjct:   18 SNEEEKELFQWTKQWYPVAVVDFLDPSRPHAIQLLGKDIVLWRDGSGQWRCFEDFCPHRLAPLSEGRVESDGTLLCAYHAWRF-DSEGNCVSIPQSIDKQTEAKHCSNKKSCAVVYPTQERQGLLWVWAESGQEAQVESQSRAPRIIPELEE----DSDRVVQLFWNVRDLPYGWDFFMENVADPAHVPVSHHGIVGSRYKDAKYYDMPRIREMSTQ 229          
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: UPI0016883242 (Rieske 2Fe-2S domain-containing protein n=3 Tax=Nostocales TaxID=1161 RepID=UPI0016883242)

HSP 1 Score: 247 bits (631), Expect = 3.140e-76
Identity = 119/212 (56.13%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   64 DVEQFQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWNDG-STWQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQS-DAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTT 693
            D E FQW KQWYP+  V+FLD SRPHA+QLLG++LV+W D    W C+ED CPHR+APLSEGR+ESDG+LLCAYHAWRF  + GKCVSIPQS D     KH  +  +CA SYP    Q +++VW ESG +A   +  + P ++PE+ED  L T      L  N RDLPY WD F ENV D AHVPVSHHGLVGNRY  A  L+   ++ ++T
Sbjct:   22 DEETFQWTKQWYPVAVVNFLDPSRPHAIQLLGKDLVVWRDNFHKWSCFEDFCPHRLAPLSEGRVESDGTLLCAYHAWRF-DSQGKCVSIPQSKDEQTATKHCSNSRSCAVSYPTQELQGLLWVWAESGKEAQLESQLRTPRIIPELEDKSLQTTH----LFWNFRDLPYGWDFFMENVADPAHVPVSHHGLVGNRYQDANYLDLVCIKQIST 228          
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: A0A6L9ZRD3_9CYAN (Rieske 2Fe-2S domain-containing protein n=1 Tax=Okeania sp. SIO3B5 TaxID=2607811 RepID=A0A6L9ZRD3_9CYAN)

HSP 1 Score: 247 bits (631), Expect = 3.310e-76
Identity = 120/214 (56.07%), Postives = 147/214 (68.69%), Query Frame = 1
Query:   61 KDVEQFQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWNDGST-WQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQS-DAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK 696
            K  E FQW KQWYP+  V+FLD SRPH +QLLG+ELVLW DGS  W C+ED CPHR+APLSEGR+ESDG+LLC+YHAWRF  A G CVSIPQS D     KH  +  +CA +YP  V Q +I+VW ESG  A   +  + P L+PE+E      + RV     NIRD PY WD F ENV+D AHV +SHHG+VGNRY  A+  N  S+R ++T+
Sbjct:   24 KQEETFQWTKQWYPVAVVEFLDPSRPHKIQLLGKELVLWRDGSAKWACFEDFCPHRLAPLSEGRVESDGTLLCSYHAWRF-DAQGNCVSIPQSKDKQTEIKHCSNSKSCAVAYPTQVNQGLIWVWAESGLQAQQESQLRKPRLIPELES----DSDRVVKFLWNIRDFPYGWDFFIENVIDPAHVGISHHGIVGNRYKDAKYCNLSSIRQMSTE 232          
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: A0A846FN29_9CYAN (Rieske 2Fe-2S domain-containing protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FN29_9CYAN)

HSP 1 Score: 246 bits (629), Expect = 8.250e-76
Identity = 115/209 (55.02%), Postives = 148/209 (70.81%), Query Frame = 1
Query:   76 FQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWNDGS-TWQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQS-DAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK 696
            FQW KQWYP+  VDFLD +RPHA+QLLG++LVLW DG+  W+C+ED CPHR+APLSEGR+ESDG+L+CAYHAWRF GADGKCV+IPQS D     K+  +  + A  YP    Q +++VWPESG  A   +  Q P ++PE+ED     +GR   L   +RDLPY WD F ENV D AHVPVSHHG++GNRY  A   +   ++ ++T+
Sbjct:   34 FQWTKQWYPIAVVDFLDPARPHAIQLLGQDLVLWRDGAGIWRCFEDFCPHRLAPLSEGRVESDGTLMCAYHAWRF-GADGKCVNIPQSKDPQTEAKNCSNHKSAAVVYPTQERQGLLWVWPESGSQAALESQLQTPRIIPELED----NSGRTVKLYWYVRDLPYGWDFFMENVADPAHVPVSHHGIIGNRYRDANYYDMIPVKQISTQ 237          
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: A0A7Z9C162_9CYAN (Rieske (2Fe-2S) region n=1 Tax=Planktothrix paucivesiculata PCC 9631 TaxID=671071 RepID=A0A7Z9C162_9CYAN)

HSP 1 Score: 245 bits (625), Expect = 1.650e-75
Identity = 117/215 (54.42%), Postives = 150/215 (69.77%), Query Frame = 1
Query:   58 EKDVEQFQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWNDGS-TWQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQS-DAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK 696
            E + EQFQW KQWYP+  V+FLD +RPHA+QLLG ++VLW DGS  W+C+ DACPHR+ PLSEGR+ESDG+LLCAYHAWRF  ++G CVSIPQS DA    KH  +P +CA  YP    Q +++VW ESG  A   +  + P LVPE+E+     + ++  L    RD+PY WD F ENV D AHVPVSHHG+VGNRY  A+  +  S R ++T+
Sbjct:   17 ETETEQFQWTKQWYPVAVVEFLDPTRPHAMQLLGEDIVLWRDGSGQWRCFADACPHRLVPLSEGRVESDGTLLCAYHAWRF-NSEGHCVSIPQSQDAETEAKHCSNPKSCAVVYPTQERQGLLWVWGESGSQAQQESQLRAPRLVPELEE----NSDQIVKLPWGFRDIPYGWDFFMENVSDPAHVPVSHHGIVGNRYKDAKYYDMISRRKISTQ 226          
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Match: A0A1U7MXZ4_9CYAN ((2Fe-2S)-binding protein n=17 Tax=Moorena TaxID=1155738 RepID=A0A1U7MXZ4_9CYAN)

HSP 1 Score: 245 bits (626), Expect = 1.890e-75
Identity = 120/214 (56.07%), Postives = 149/214 (69.63%), Query Frame = 1
Query:   61 KDVEQFQWFKQWYPLRAVDFLDASRPHAVQLLGRELVLWNDGS-TWQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFAGADGKCVSIPQSDAMVRE-KHMGSPMACAKSYPVTVAQDMIFVWPESGPDAVAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDAAHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK 696
            K  E FQW KQWYP+  V+FL  SRPH +QLLG+ELVLW DGS  W+C+ED CPHR+APLSEGR+ESDG+LLCAYHAWRF  A G CVSIPQS     E K+  +P +CA +YP    Q +++VWPESG  A   +  + P L+PE+E      + RV  L  NIRDLPY WD F ENV D AHVPVSHHG++G+RY  A+  +   LR ++T+
Sbjct:   24 KQDETFQWTKQWYPVAVVEFLAPSRPHKIQLLGKELVLWRDGSGKWRCFEDFCPHRLAPLSEGRVESDGTLLCAYHAWRF-DAQGNCVSIPQSQDQETELKNCSNPKSCAVAYPTQENQGLLWVWPESGTKAQQESQLRKPRLIPELES----DSDRVVKLFWNIRDLPYGWDFFMENVADPAHVPVSHHGIMGSRYEDAKYYDMPGLREISTQ 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352AHJ1_9CYAN3.670e-7854.88(2Fe-2S)-binding protein n=1 Tax=Cyanobacteria bac... [more]
UPI00047934FE2.900e-7754.42Rieske 2Fe-2S domain-containing protein n=1 Tax=Fi... [more]
A0A6P0S377_9CYAN4.090e-7753.95Rieske 2Fe-2S domain-containing protein n=2 Tax=un... [more]
A0A856MM91_9CYAN4.340e-7756.94(2Fe-2S)-binding protein n=1 Tax=Brasilonema senna... [more]
A0A8J6SPF2_9CYAN5.770e-7753.92Rieske 2Fe-2S domain-containing protein n=6 Tax=Cy... [more]
UPI00168832423.140e-7656.13Rieske 2Fe-2S domain-containing protein n=3 Tax=No... [more]
A0A6L9ZRD3_9CYAN3.310e-7656.07Rieske 2Fe-2S domain-containing protein n=1 Tax=Ok... [more]
A0A846FN29_9CYAN8.250e-7655.02Rieske 2Fe-2S domain-containing protein n=1 Tax=Cy... [more]
A0A7Z9C162_9CYAN1.650e-7554.42Rieske (2Fe-2S) region n=1 Tax=Planktothrix pauciv... [more]
A0A1U7MXZ4_9CYAN1.890e-7556.07(2Fe-2S)-binding protein n=17 Tax=Moorena TaxID=11... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig208contigP-wetherbeei_contig208:413..1285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1173024.KI912149_gene5544
PFAMsPaO,Rieske
Model size696
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.75e-78
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,1G43Y@1117|Cyanobacteria,1JJS7@1189|Stigonemataceae
DescriptionPheophorbide a oxygenase
Cds size696
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186208.9155085-CDS-P-wetherbeei_contig208:412..7751683186208.9155085-CDS-P-wetherbeei_contig208:412..775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig208 413..775 -
1683186208.9266-CDS-P-wetherbeei_contig208:952..12851683186208.9266-CDS-P-wetherbeei_contig208:952..1285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig208 953..1285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig208.1.1prot_P-wetherbeei_contig208.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig208 413..1285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig208.1.1

>prot_P-wetherbeei_contig208.1.1 ID=prot_P-wetherbeei_contig208.1.1|Name=mRNA_P-wetherbeei_contig208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=232bp
EVGPSGDTADPDVFKTDADEKDVEQFQWFKQWYPLRAVDFLDASRPHAVQ
LLGRELVLWNDGSTWQCYEDACPHRMAPLSEGRIESDGSLLCAYHAWRFA
GADGKCVSIPQSDAMVREKHMGSPMACAKSYPVTVAQDMIFVWPESGPDA
VAAAAAQPPPLVPEMEDVELVTAGRVRPLTVNIRDLPYSWDMFFENVVDA
AHVPVSHHGLVGNRYTGAQPLNFKSLRPVTTK
back to top

mRNA from alignment at P-wetherbeei_contig208:413..1285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig208.1.1 ID=mRNA_P-wetherbeei_contig208.1.1|Name=mRNA_P-wetherbeei_contig208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=873bp|location=Sequence derived from alignment at P-wetherbeei_contig208:413..1285- (Phaeothamnion wetherbeei SAG_119_79)
GAAGTTGGCCCCTCTGGCGATACCGCCGACCCTGACGTCTTCAAGACGGA CGCCGACGAGAAGGATGTGGAGCAGTTCCAGTGGTTCAAGCAGTGGTATC CGCTGCGAGCCGTTGATTTCCTCGACGCGTCGCGCCCCCATGCGGTCCAG CTGCTCGGCCGCGAGCTCGTCTTATGGAACGATGGCAGCACATGGCAATG CTACGAAGACGCCTGTCCACACCGCATGGCACCGCTGAGCGAGGGGCGGA TAGAGAGCGACGGATCCCTCTTGTGCGCCTACCACGCCTGGCGCTTCGCC GGCGCTGACGGAAAGTGCGTCAGCATCCCGCAGGTTGGTGCGATCCGTCA GCTGGCGGAAGTGTGGAGAAAGGGTTGAAACGCTGAGACGGTTGGCGTTT GCCGTGCTCGTGACTTTTCTGCTGGGTATGCTGGTTATCGTTCTTTACGC TTTTATGTGCTTTCCATCTAGTTCTCATCCGCTTTTTCCACCATGCCTAA CCATTCGCAGAGCGACGCGATGGTTCGGGAGAAGCACATGGGCAGCCCGA TGGCGTGCGCCAAAAGCTACCCCGTCACCGTGGCGCAGGACATGATCTTC GTCTGGCCCGAGTCCGGACCCGACGCGGTGGCGGCCGCGGCGGCGCAGCC CCCTCCGCTTGTGCCAGAAATGGAAGATGTTGAGCTGGTCACCGCAGGCC GGGTGAGGCCGCTGACGGTCAACATCCGGGACCTGCCGTACTCTTGGGAC ATGTTCTTCGAGAACGTTGTTGACGCAGCGCACGTGCCGGTGTCGCACCA CGGCCTCGTCGGCAACCGCTACACGGGCGCCCAGCCTTTGAACTTCAAGT CCCTGCGACCCGTCACCACCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig208:413..1285-

>mRNA_P-wetherbeei_contig208.1.1 ID=mRNA_P-wetherbeei_contig208.1.1|Name=mRNA_P-wetherbeei_contig208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=696bp|location=Sequence derived from alignment at P-wetherbeei_contig208:413..1285- (Phaeothamnion wetherbeei SAG_119_79)
GAAGTTGGCCCCTCTGGCGATACCGCCGACCCTGACGTCTTCAAGACGGA
CGCCGACGAGAAGGATGTGGAGCAGTTCCAGTGGTTCAAGCAGTGGTATC
CGCTGCGAGCCGTTGATTTCCTCGACGCGTCGCGCCCCCATGCGGTCCAG
CTGCTCGGCCGCGAGCTCGTCTTATGGAACGATGGCAGCACATGGCAATG
CTACGAAGACGCCTGTCCACACCGCATGGCACCGCTGAGCGAGGGGCGGA
TAGAGAGCGACGGATCCCTCTTGTGCGCCTACCACGCCTGGCGCTTCGCC
GGCGCTGACGGAAAGTGCGTCAGCATCCCGCAGAGCGACGCGATGGTTCG
GGAGAAGCACATGGGCAGCCCGATGGCGTGCGCCAAAAGCTACCCCGTCA
CCGTGGCGCAGGACATGATCTTCGTCTGGCCCGAGTCCGGACCCGACGCG
GTGGCGGCCGCGGCGGCGCAGCCCCCTCCGCTTGTGCCAGAAATGGAAGA
TGTTGAGCTGGTCACCGCAGGCCGGGTGAGGCCGCTGACGGTCAACATCC
GGGACCTGCCGTACTCTTGGGACATGTTCTTCGAGAACGTTGTTGACGCA
GCGCACGTGCCGGTGTCGCACCACGGCCTCGTCGGCAACCGCTACACGGG
CGCCCAGCCTTTGAACTTCAAGTCCCTGCGACCCGTCACCACCAAG
back to top