mRNA_P-wetherbeei_contig2066.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2066.1.1
Unique NamemRNA_P-wetherbeei_contig2066.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2066.1.1 vs. uniprot
Match: D7G8B3_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B3_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.160e-39
Identity = 146/469 (31.13%), Postives = 206/469 (43.92%), Query Frame = 1 
Query:   10 LEAALLSALSGNNVVRLKAEETLRAATAVPGCVRCLASMVAAV------------------------DGHAEPARMMAGVLLQHWVKDLWRAAPEALLPPSDRAEVRGLMLSAMFDPRSARRMRTAAALVVALIATH--DWPQVXXXXXXXXXGELL------------RGDDATP-------------------------SRAYTCSQCLLFMAEKIPMGRIPALFQESFGALLHAAGSATALPRRARRKAVAVVGTLFHSLGTLITVGGEVSLLQLVAPAALPWADLAAVALAAA----GAPGDAD-------------DFALELQILASLLPAVTLFPQAVGP-HLPRLMAPAWALLMQATIHHEAHGVGIGGFGGGYGGYEDES---------YASDGDRLGFEPLVESLVELLTAVAACDDTDMSAAVIPD-SGFPPLVFVALRLAQATPRHTQLWADDPAGFL 1143
            ++A L SALS +N VR  AE  L  A    G    LA  +A+                         DG   P R+MAG+LLQH+V+D W  A +A+LP  D+ +VR L L+ M D  + R  R +A+ VVAL+AT   +WP           G+L              G    P                         +RA +C++CL ++ E++PM  +P +FQ++F  L+ A G A  LPR  RR+   +V  LF S+GTL++V GE  LL  +     PW  L +  L +A       GD D             DF +EL+ L + +  +   P  VG  HL +L+ P W LL      HE   +   G   G  G E            YASDG+R G + L+   +ELL A AAC D  +S  +  + +G   L+ V +R  Q       LW D P  F+
Sbjct:    1 MDAVLCSALSADNTVRRGAEAALSYARTQRGFAIALAKQLASNYYPRGAYDGDXXXXXXXXXXXXERDGMWMPMRLMAGMLLQHFVRDQWELADDAVLPAEDKIQVRTLALTTMIDVSAPRAARASASRVVALMATAGGEWPSGWGGLIPSLIGQLAIAAAAVENARAEAGSAEAPRGGVGGRGRAGERAEAAAVAAEHAVARAESCAKCLQYLTEEVPMEHVPEVFQQAFPGLVEA-GKADYLPRSIRRRVFRIVRELFTSIGTLVSVRGETRLLPGLQQCVPPWLHLVSKTLQSAVDGRAIGGDRDKNGXXXXXXXXXXDFGVELEGLRTAMVLLAHVPSTVGDGHLGQLLPPLWQLLTDGRERHEQSMLSSDG--NGEDGDEXXXXXXXXXXXXYASDGERQGLDELIVQSLELLAASAACPDPQVSGLLGGEGAGVGSLLAVVIRYLQLPSESCALWRDSPNEFV 466
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BLAST of mRNA_P-wetherbeei_contig2066.1.1 vs. uniprot
Match: A0A7S3X1K2_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X1K2_EMIHU)

HSP 1 Score: 76.3 bits (186), Expect = 8.860e-11
Identity = 113/416 (27.16%), Postives = 174/416 (41.83%), Query Frame = 1 
Query:    4 EALEAALLSALSGNNVVRLKAEETLRAATAVPGCVRCLASMVAAVDGHAEPARMMAGVLLQHWVKDLWRAAPEALLPP----SDRAEVRGLMLSAMFDPRSARRMRTAAALVVALIATHDWPQVXXXXXXXXXGELLRGDDATP-----------SRAYTCSQCLLFMAEKIPMGRIPALFQESFGALLH---AAGSATALPRRARRKAVAVVGTLFHSLGTLITVGGEVSLLQ-LVAPAALPWADLAAVALAAAGAP-------GDADDFALELQILASLLPAVTLFPQAVGPHLPRLMAPAWALL------MQATIHHEAHGVGIGGFGGGYGGYEDESYASDGDRLGFEPLVESLVELLTAVAACDDTDMSAAVIPDSGFPPLVFVALRLAQATPRHTQLWADDPAGFLREDE 1155
            +A+ AAL  AL  +  VR  AEE + + +A PG V  L  ++      A  AR +A V+L+++++  W  A     PP     ++A VR  +   + D     R+RTA  + VA IA  DWP            ELLR  +A             + A    +CL   A ++   ++PA  Q     LL     AG   A  ++A R  V V   +   L  L  VG +   LQ L A     W  LA   L    +        G+ +D +L + +L  L   ++ +P ++ P    L+ P  ALL       Q  +  +A  +G            +E   SDG  LG E LV  + ++L A+A+   +     ++P    P L+  A+   Q      Q WADD   +L ++E
Sbjct:   12 QAVFAALCDALLTDLAVRRAAEERVSSLSAQPGFVVSLVEVLLEPQAEAA-ARQLAAVVLKNFLRTHWCEAAVTFTPPLVSDHEKAAVRAALPRGLSD--RVPRIRTAVGVAVATIAQWDWPD----EWPSLMDELLRPLEAAXXXXXXXXXXXXAPAAGALRCLELCASELSEDQLPAATQRLLPLLLQLARGAGGDAASAKQAARS-VRVARRVIERLSLL--VGDDHRQLQRLRAGPVAAWGVLATEQLGQLASRYRVTPPGGEPEDHSLSIALLRLLQLLLSSWPASLPPARCSLLPPLGALLSGALQTFQQRLLCDAASLG------------EEGADSDGSSLGLEALVSHVFDVLAAMAS--SSRHHKLLLP--ALPQLLHGAIAFTQLPVATEQAWADDLQQYLLDEE 401
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2066.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8B3_ECTSI1.160e-3931.13Importin N-terminal domain-containing protein n=1 ... [more]
A0A7S3X1K2_EMIHU8.860e-1127.16Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2066contigP-wetherbeei_contig2066:2608..4638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8B3
Preferred nameIPO9
PFAMsIBN_N,Xpo1
Model size1629
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00876,ko:K20224
KEGG TC1.I.1
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0022613,GO:0031224,GO:0031267,GO:0031647,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042393,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050821,GO:0051020,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons4
Evalue1.9e-40
EggNOG OGsCOG5657@1|root,KOG2274@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-19_003830.1
EC2.7.1.48
DescriptionRan GTPase binding
Cds size1629
COG categoryD
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186205.78277-CDS-P-wetherbeei_contig2066:2607..30331683186205.78277-CDS-P-wetherbeei_contig2066:2607..3033Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2066 2608..3033 +
1683186205.8022118-CDS-P-wetherbeei_contig2066:3111..34121683186205.8022118-CDS-P-wetherbeei_contig2066:3111..3412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2066 3112..3412 +
1683186205.814985-CDS-P-wetherbeei_contig2066:3469..41161683186205.814985-CDS-P-wetherbeei_contig2066:3469..4116Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2066 3470..4116 +
1683186205.8253214-CDS-P-wetherbeei_contig2066:4383..46381683186205.8253214-CDS-P-wetherbeei_contig2066:4383..4638Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2066 4384..4638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2066.1.1prot_P-wetherbeei_contig2066.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2066 2608..4638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2066.1.1

>prot_P-wetherbeei_contig2066.1.1 ID=prot_P-wetherbeei_contig2066.1.1|Name=mRNA_P-wetherbeei_contig2066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=543bp
MEALEAALLSALSGNNVVRLKAEETLRAATAVPGCVRCLASMVAAVDGHA
EPARMMAGVLLQHWVKDLWRAAPEALLPPSDRAEVRGLMLSAMFDPRSAR
RMRTAAALVVALIATHDWPQVWPELLPSLLGELLRGDDATPSRAYTCSQC
LLFMAEKIPMGRIPALFQESFGALLHAAGSATALPRRARRKAVAVVGTLF
HSLGTLITVGGEVSLLQLVAPAALPWADLAAVALAAAGAPGDADDFALEL
QILASLLPAVTLFPQAVGPHLPRLMAPAWALLMQATIHHEAHGVGIGGFG
GGYGGYEDESYASDGDRLGFEPLVESLVELLTAVAACDDTDMSAAVIPDS
GFPPLVFVALRLAQATPRHTQLWADDPAGFLREDEEETANSSSIRASAAG
LLRALAERSSAAAAAAVAAACLGLLRDAAAAAGSGGAGGDAAGGGGSGGG
GALAAGAAFKVLRRGAASIGFNLADLQGVLVAAATGNFPLCDSPLVRGRA
LWTAARFVGALTDEQAVTAVAAAVACLRPSCSLPLRLCACRAL
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mRNA from alignment at P-wetherbeei_contig2066:2608..4638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2066.1.1 ID=mRNA_P-wetherbeei_contig2066.1.1|Name=mRNA_P-wetherbeei_contig2066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2031bp|location=Sequence derived from alignment at P-wetherbeei_contig2066:2608..4638+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCCCTTGAAGCCGCGTTGCTCTCGGCGCTCTCCGGCAACAATGT
GGTGCGGCTCAAGGCCGAAGAGACGCTACGGGCGGCCACCGCCGTCCCCG
GCTGCGTCCGATGCTTAGCCTCGATGGTCGCCGCGGTGGACGGCCACGCC
GAGCCCGCCCGGATGATGGCTGGCGTCCTGCTGCAGCACTGGGTAAAGGA
CCTCTGGCGCGCGGCGCCCGAAGCGCTCCTCCCGCCGTCGGACCGCGCCG
AAGTGCGAGGTCTCATGCTGTCGGCTATGTTCGATCCGCGGAGCGCGCGC
CGCATGCGGACGGCGGCGGCGCTCGTCGTGGCGCTGATCGCGACGCACGA
CTGGCCGCAAGTGTGGCCAGAGCTGCTCCCGTCGCTGCTCGGCGAGCTGT
TGCGGGGCGACGACGCCACCCCGTCGGTCGACGGTGCAGCGGCGATCGCA
AATCCAGCGGCCTCCTCTGCGAGTAGCAACGCCGCCGCGAACGCCCGCGG
GGAGCGGGCGTACACCTGTTCGCAGTGCCTGCTTTTCATGGCGGAAAAGA
TCCCCATGGGGCGGATCCCAGCGCTATTCCAAGAGTCCTTCGGCGCGCTG
CTCCACGCGGCCGGCTCCGCCACCGCCCTGCCGCGGCGGGCGCGCCGTAA
GGCCGTCGCCGTCGTCGGCACGCTCTTCCATTCGCTGGGCACGCTCATCA
CCGTCGGCGGCGAGGTGTCGCTCTTGCAGCTGGTCGCGCCGGCCGCGCTG
CCGTGGGCGGACCTCGCCGCCGTCGCGCTCGCTGCCGCTGGTGCTCCCGG
CGACGGTGGTGACGGCAGCAGCGGCGGCGGTCTCGGCGGTAGCGGCAGCG
GCGGTGCAGCAGCGGATGATTTTGCGCTGGAACTGCAGATTCTGGCAAGC
CTGCTGCCGGCCGTGACGCTCTTTCCGCAGGCGGTTGGGCCGCACCTGCC
GCGCCTGATGGCTCCCGCCTGGGCGCTCCTGATGCAGGCGACGATACACC
ACGAGGCGCACGGTGTCGGCATTGGCGGATTCGGTGGCGGTTACGGCGGT
TACGAGGACGAGAGCTACGCATCGGACGGCGACCGGCTCGGCTTCGAGCC
GCTGGTGGAGTCGCTCGTGGAACTTTTGACGGCCGTCGCGGCCTGTGACG
ACACCGACATGTCCGCTGCGGTCATCCCGGACTCCGGCTTCCCGCCGCTG
GTGTTCGTCGCTCTCCGGCTGGCGCAGGCGACGCCCCGCCACACCCAGCT
CTGGGCGGATGACCCCGCCGGCTTTCTGCGGGAAGACGAAGAGGAAACGG
CCAACTCATCGTCGATCCGGGCGAGCGCTGCAGGCCTCCTGCGGGCGCTG
GCGGAGCGCAGCTCTGCCGCCGCCGCCGCCGCCGTTGCCGCGGCGTGCCT
TGGGTTGTTGCGCGACGCCGCCGCCGCCGCGGGCAGCGGCGGTGCTGGTG
GCGATGCTGCCGGCGGCGGCGGCTCTGGTGGCGGAGGAGCTTTGGCAGCG
GGAGCAGCGGTGGCGGGATGGCAGCGGACAGAAGTCGCGCTCTTCGGGCT
CGGAACCTGCGCCCCGGAGATCTGCTCGCAGTTGCGGCGGGCCGGCGCGG
CAGCAGTGGCAGCGGACGAGGCAAAGGTGGTGGCCACTGCATCTGTTGGC
CGCGGCAAGGGCAAAGGAACAGGCAAGGCGGCCGCCAGGGCCGCCGCCGC
GGCAAAGGCGGCGGCCGCGGCAAAGGCGACAGCGGTGCCGGCTGCGGCGG
ACGGAGAAGGCGGCGAGGAGGAAGAGTTTAAGGTGTTGCGGCGCGGTGCT
GCTTCCATCGGGTTCAATTTGGCGGATCTGCAGGGGGTTCTGGTGGCGGC
GGCAACCGGAAACTTCCCGCTTTGCGACTCGCCGCTAGTCCGCGGGCGGG
CGCTCTGGACGGCGGCGCGCTTTGTGGGTGCGCTCACCGACGAACAGGCC
GTAACTGCCGTCGCCGCTGCCGTCGCGTGCCTGCGGCCGTCGTGCTCGCT
GCCACTGCGCCTGTGCGCCTGCCGCGCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2066:2608..4638+

>mRNA_P-wetherbeei_contig2066.1.1 ID=mRNA_P-wetherbeei_contig2066.1.1|Name=mRNA_P-wetherbeei_contig2066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1629bp|location=Sequence derived from alignment at P-wetherbeei_contig2066:2608..4638+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCCCTTGAAGCCGCGTTGCTCTCGGCGCTCTCCGGCAACAATGT
GGTGCGGCTCAAGGCCGAAGAGACGCTACGGGCGGCCACCGCCGTCCCCG
GCTGCGTCCGATGCTTAGCCTCGATGGTCGCCGCGGTGGACGGCCACGCC
GAGCCCGCCCGGATGATGGCTGGCGTCCTGCTGCAGCACTGGGTAAAGGA
CCTCTGGCGCGCGGCGCCCGAAGCGCTCCTCCCGCCGTCGGACCGCGCCG
AAGTGCGAGGTCTCATGCTGTCGGCTATGTTCGATCCGCGGAGCGCGCGC
CGCATGCGGACGGCGGCGGCGCTCGTCGTGGCGCTGATCGCGACGCACGA
CTGGCCGCAAGTGTGGCCAGAGCTGCTCCCGTCGCTGCTCGGCGAGCTGT
TGCGGGGCGACGACGCCACCCCGTCGCGGGCGTACACCTGTTCGCAGTGC
CTGCTTTTCATGGCGGAAAAGATCCCCATGGGGCGGATCCCAGCGCTATT
CCAAGAGTCCTTCGGCGCGCTGCTCCACGCGGCCGGCTCCGCCACCGCCC
TGCCGCGGCGGGCGCGCCGTAAGGCCGTCGCCGTCGTCGGCACGCTCTTC
CATTCGCTGGGCACGCTCATCACCGTCGGCGGCGAGGTGTCGCTCTTGCA
GCTGGTCGCGCCGGCCGCGCTGCCGTGGGCGGACCTCGCCGCCGTCGCGC
TCGCTGCCGCTGGTGCTCCCGGCGACGCGGATGATTTTGCGCTGGAACTG
CAGATTCTGGCAAGCCTGCTGCCGGCCGTGACGCTCTTTCCGCAGGCGGT
TGGGCCGCACCTGCCGCGCCTGATGGCTCCCGCCTGGGCGCTCCTGATGC
AGGCGACGATACACCACGAGGCGCACGGTGTCGGCATTGGCGGATTCGGT
GGCGGTTACGGCGGTTACGAGGACGAGAGCTACGCATCGGACGGCGACCG
GCTCGGCTTCGAGCCGCTGGTGGAGTCGCTCGTGGAACTTTTGACGGCCG
TCGCGGCCTGTGACGACACCGACATGTCCGCTGCGGTCATCCCGGACTCC
GGCTTCCCGCCGCTGGTGTTCGTCGCTCTCCGGCTGGCGCAGGCGACGCC
CCGCCACACCCAGCTCTGGGCGGATGACCCCGCCGGCTTTCTGCGGGAAG
ACGAAGAGGAAACGGCCAACTCATCGTCGATCCGGGCGAGCGCTGCAGGC
CTCCTGCGGGCGCTGGCGGAGCGCAGCTCTGCCGCCGCCGCCGCCGCCGT
TGCCGCGGCGTGCCTTGGGTTGTTGCGCGACGCCGCCGCCGCCGCGGGCA
GCGGCGGTGCTGGTGGCGATGCTGCCGGCGGCGGCGGCTCTGGTGGCGGA
GGAGCTTTGGCAGCGGGAGCAGCGTTTAAGGTGTTGCGGCGCGGTGCTGC
TTCCATCGGGTTCAATTTGGCGGATCTGCAGGGGGTTCTGGTGGCGGCGG
CAACCGGAAACTTCCCGCTTTGCGACTCGCCGCTAGTCCGCGGGCGGGCG
CTCTGGACGGCGGCGCGCTTTGTGGGTGCGCTCACCGACGAACAGGCCGT
AACTGCCGTCGCCGCTGCCGTCGCGTGCCTGCGGCCGTCGTGCTCGCTGC
CACTGCGCCTGTGCGCCTGCCGCGCGCTG
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