mRNA_P-wetherbeei_contig20596.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20596.1.1
Unique NamemRNA_P-wetherbeei_contig20596.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: A0A835Z3B0_9STRA (Protein pelota homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B0_9STRA)

HSP 1 Score: 245 bits (626), Expect = 7.840e-77
Identity = 127/186 (68.28%), Postives = 147/186 (79.03%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEE 558
            RAVL  +DF  VRCVLLG PGFVKDDF+AYLC E++RR+DRP IENK KFVL HA+SGH+ AV+E L++PAV ARLADT+AA E RAL  FF ML+ DPDRA YG AHV RA    AVD LLVTDGLFRA ++ TRR+YV LV  AK  GA V VFSSM  TGEQLG++ G+AAVLRFP+PD+ EE
Sbjct:  190 RAVLDKIDFAVVRCVLLGSPGFVKDDFFAYLCEEAVRREDRPLIENKAKFVLCHATSGHKHAVEELLSQPAVLARLADTKAAAEVRALAEFFAMLKADPDRAFYGYAHVARACADSAVDALLVTDGLFRARELATRRKYVALVEDAKEKGARVFVFSSMHVTGEQLGQLGGIAAVLRFPMPDIEEE 375          
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: A0A6H5L059_9PHAE (Protein pelota homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L059_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 2.260e-73
Identity = 119/193 (61.66%), Postives = 156/193 (80.83%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEEALDSDD 579
            +A+++HV+F +++C+LLG PGFVKDDF+ +L  E++RR++R  IENK KFVLVHASSGH+ AV+E L++PAVQ RLADT+A+ E RAL  FF ML+ DPDRA YG  HV RA +  AVD+LLVTDGLFR++D+ TR++YVDLV  AK  GA V VFSSM  TGEQLG++TG+AAVLRFPLP++ E++   SD+
Sbjct:  188 QAIVRHVNFQQIKCLLLGSPGFVKDDFFEFLNLEAVRREERVLIENKSKFVLVHASSGHKHAVEEILSQPAVQTRLADTKASEEIRALATFFDMLKKDPDRAYYGYNHVSRANEELAVDSLLVTDGLFRSSDLQTRKKYVDLVETAKDRGAKVFVFSSMHVTGEQLGQLTGIAAVLRFPLPEIEEDDDESSDE 380          
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: A0A2U9CM17_SCOMX (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A2U9CM17_SCOMX)

HSP 1 Score: 209 bits (531), Expect = 2.470e-64
Identity = 103/193 (53.37%), Postives = 149/193 (77.20%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEEALDSDD 579
            +A+L+H++F  V+C L+G PGFVKD F AYL  E++R+D++  +EN+ KF+LVH+SSGH+ ++ E L++P V +RL+DT+AA E +ALE F++ML+ +PDRA YG AHV+RA +  A+DTLL++D LFR  DVPTR RYV LV + + NG  V +FSS+  +GEQL +++GVAA+LRFP+ D++EEE   S D
Sbjct:   71 QAILRHINFDVVKCFLVGSPGFVKDQFIAYLFREAVRQDNKLLLENRPKFMLVHSSSGHKYSLKEILSDPTVTSRLSDTKAAGEVKALEDFYKMLQHEPDRAFYGVAHVERAAEALAIDTLLISDNLFRHQDVPTRSRYVRLVDSVRDNGGNVRIFSSLHVSGEQLTQLSGVAAMLRFPIADLSEEEDGSSSD 263          
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: A0A176WJR1_MARPO (Protein pelota homolog n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WJR1_MARPO)

HSP 1 Score: 210 bits (535), Expect = 1.590e-63
Identity = 104/187 (55.61%), Postives = 137/187 (73.26%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEE 561
            + VL+HVDF  V+C+++  PGF KD F+ Y+  E+ RR+ R  IENK K VL H+SSG++ ++ E LAEPAV A++ DTRAA E + ++ FF ML  D  RA YGP HV+ A +  A+ TLL+TD LFR AD+PTRRRYVDLV + K  G  VHVFSSM  +GEQLG++TG+AA+LRFPLPD+ + E
Sbjct:  191 QGVLRHVDFSIVKCLIIASPGFTKDQFYNYMMLEASRRELRNIIENKSKIVLAHSSSGYKHSLKEVLAEPAVMAQIKDTRAAKEVKVMQDFFSMLSQDSARAFYGPKHVEAAQERIAIQTLLITDELFRCADIPTRRRYVDLVESVKEMGGDVHVFSSMHPSGEQLGQLTGIAAILRFPLPDLEDME 377          
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: D8RWD8_SELML (Protein pelota homolog n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RWD8_SELML)

HSP 1 Score: 209 bits (531), Expect = 6.340e-63
Identity = 105/187 (56.15%), Postives = 136/187 (72.73%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEE 561
            +A+++ VDF  +RC++L  PGF KD F+ Y+  ES RR+ R  IENK KF+L H+SS ++ ++ E L  P+V +R+ DT+AA E RALE FF ML TDP RA YGPAHV  A D  AV TLL+TD LFR AD+PTR RYV+LV + K  G  VHVFSSM  +GEQL +MTG+AA+LR+PLPD+ + E
Sbjct:  191 QALVRSVDFTLIRCIILASPGFTKDQFFDYINLESTRREIRAIIENKSKFILAHSSSAYKHSLKEVLGSPSVASRIKDTKAAQEVRALEQFFNMLSTDPLRATYGPAHVSAAHDRFAVQTLLITDALFRNADIPTRTRYVELVESVKEKGGNVHVFSSMHVSGEQLAQMTGIAAILRYPLPDLEDLE 377          
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: B8CDN4_THAPS (Protein pelota homolog n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDN4_THAPS)

HSP 1 Score: 210 bits (534), Expect = 6.710e-63
Identity = 101/187 (54.01%), Postives = 143/187 (76.47%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEE 561
            RAVL HV F +++CVLLG PGF KDDF+ YL AES+RR+DRP IENKGKFVL H+SSGH+ A++E  ++P + +R+ +T+ + E   L  F R+L T+PD+A YG  HVQ+A D  A+D+LL++D LFR++DV TR++YV LV + +  G  V+VFS+M  +G+QL +++GVAA+LR+PLPD+ E E
Sbjct:  191 RAVLMHVPFDKIKCVLLGSPGFQKDDFFKYLLAESVRREDRPLIENKGKFVLCHSSSGHKHAIEEMFSDPNIMSRVTETKLSREIEVLNKFMRLLDTNPDKAYYGYFHVQKANDELAIDSLLISDELFRSSDVVTRKKYVSLVESVRDRGGTVYVFSTMHVSGQQLQQVSGVAAILRYPLPDLEELE 377          
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: A0A7S1Z461_TRICV (Protein pelota homolog n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z461_TRICV)

HSP 1 Score: 210 bits (534), Expect = 6.880e-63
Identity = 107/187 (57.22%), Postives = 141/187 (75.40%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEE 561
            +AVL+HVDF +V+CVL+  PG+VKDDF+ YL AE +RRDDRPF+EN+ KFVL  ASSGH+ A++E  A+  V  RL DT+ A E R L  F RM+ TDPDRA YG AHV RA    AV++LLVTD LFR++DV TR++YV LV + + NG  V +FSS+  +G+QL +++GVAA+LR+PLPD+ E E
Sbjct:  191 QAVLRHVDFEQVKCVLIASPGYVKDDFFKYLTAECVRRDDRPFVENRSKFVLCKASSGHKHALEEVFADSDVIGRLEDTKFAREVRVLNKFMRMIDTDPDRAYYGYAHVHRADTELAVESLLVTDALFRSSDVVTRKKYVQLVESVRDNGGEVLIFSSLHVSGQQLQQVSGVAAILRYPLPDLDELE 377          
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: UPI001471E732 (protein pelota homolog n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001471E732)

HSP 1 Score: 208 bits (530), Expect = 1.080e-62
Identity = 103/193 (53.37%), Postives = 147/193 (76.17%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEEALDSDD 579
            +A+L+H++F  V+C+L+  PGFVKD F+ YL  E++R+D++  +EN+ KF+LVH++SGH+ ++ E L +PAV +RL+DT+AA E +AL+ FF+ML+ +PDRA YG A V++A D  A+DTLL++D LFR  DVPTR RYV LV + K NG  V +FSS+  +GEQL +MTGVAAVLRFP+ D++E E   S D
Sbjct:  191 QAILRHINFDVVKCILIASPGFVKDSFFTYLFKEAVRQDNKLLMENRSKFMLVHSTSGHKYSLKEILCDPAVTSRLSDTKAAGEVKALDDFFKMLQHEPDRAFYGVAQVEKAADALAIDTLLISDKLFRHQDVPTRSRYVRLVDSVKDNGGNVRIFSSLHVSGEQLTQMTGVAAVLRFPMADLSETEEDSSSD 383          
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: A0A7M7KYV3_VARDE (Protein pelota homolog n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7KYV3_VARDE)

HSP 1 Score: 208 bits (530), Expect = 1.110e-62
Identity = 105/193 (54.40%), Postives = 142/193 (73.58%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEEALDSDD 579
            RA+ QHV+F  V+CVLL  PGFVKD F+ Y+   + ++D + F++NKGKFVL H+SSG +AA+ + L +P VQA+LADT+AA E +AL  FF++L  +PDRA+YGP HV++A D  A+DTLL++D LFR  DV  RRRYV LV   +  G  V +FSS+  +GE L  +TGVAA+LRFP+P+VA EE +D DD
Sbjct:  191 RAIKQHVNFDVVKCVLLASPGFVKDQFFKYIMTTAAQQDCKQFLDNKGKFVLAHSSSGFKAALRDVLEDPTVQAKLADTKAANEVKALNQFFQVLHQEPDRALYGPKHVEKAADAQAIDTLLISDKLFRCQDVAERRRYVSLVEYVRDAGGDVKIFSSLHVSGENLDHLTGVAAILRFPMPEVANEE-MDDDD 382          
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Match: A0A7S4JKG5_9STRA (Protein pelota homolog (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKG5_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.770e-62
Identity = 104/187 (55.61%), Postives = 140/187 (74.87%), Query Frame = 1
Query:    1 RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKFVLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPDRAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANGAAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEE 561
            +A+L+HVDF RV+CVLLG PG+VKDDF+ Y+  ES+RRDDR  +ENK KFVL  ASSGH+ A++E   +P + ++L DT+ A E   L  F RM+ T PD+A YG AHV +A D  AV +LLVTD LFR++DV TR++YV LV + + NG  VHVFSS+  +G+QL +++GVAA+LR+PLPD+ E E
Sbjct:  191 QAILRHVDFTRVKCVLLGSPGYVKDDFYKYMMTESVRRDDRSLMENKSKFVLCKASSGHKHALEEMFGDPDIMSQLTDTKFAREVDVLNRFMRMIDTHPDKAYYGYAHVFKANDELAVQSLLVTDSLFRSSDVSTRKKYVRLVESVRENGGDVHVFSSLHVSGQQLAQVSGVAAILRYPLPDLDELE 377          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20596.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3B0_9STRA7.840e-7768.28Protein pelota homolog n=1 Tax=Tribonema minus Tax... [more]
A0A6H5L059_9PHAE2.260e-7361.66Protein pelota homolog n=2 Tax=Ectocarpus TaxID=28... [more]
A0A2U9CM17_SCOMX2.470e-6453.37Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]
A0A176WJR1_MARPO1.590e-6355.61Protein pelota homolog n=3 Tax=Marchantia polymorp... [more]
D8RWD8_SELML6.340e-6356.15Protein pelota homolog n=2 Tax=Selaginella moellen... [more]
B8CDN4_THAPS6.710e-6354.01Protein pelota homolog n=1 Tax=Thalassiosira pseud... [more]
A0A7S1Z461_TRICV6.880e-6357.22Protein pelota homolog n=1 Tax=Trieres chinensis T... [more]
UPI001471E7321.080e-6253.37protein pelota homolog n=1 Tax=Thalassophryne amaz... [more]
A0A7M7KYV3_VARDE1.110e-6254.40Protein pelota homolog n=2 Tax=Varroa TaxID=62624 ... [more]
A0A7S4JKG5_9STRA1.770e-6255.61Protein pelota homolog (Fragment) n=1 Tax=Odontell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20596contigP-wetherbeei_contig20596:294..1211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6W7
Preferred namePELO
PFAMseRF1_1,eRF1_2,eRF1_3
Model size639
Max annot lvl2759|Eukaryota
KEGG koko:K01669,ko:K06480,ko:K06965
KEGG Pathwayko03015,ko04151,ko04510,ko04512,ko04640,ko04810,ko05165,ko05410,ko05412,ko05414,map03015,map04151,map04510,map04512,map04640,map04810,map05165,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000956,GO:0001654,GO:0001745,GO:0002181,GO:0002184,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006986,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007127,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007423,GO:0007492,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0008283,GO:0008315,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0017145,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019827,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030397,GO:0030510,GO:0030513,GO:0030718,GO:0030855,GO:0030968,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034620,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0035966,GO:0035967,GO:0040029,GO:0042078,GO:0042221,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044464,GO:0044703,GO:0044770,GO:0044771,GO:0044839,GO:0044877,GO:0045727,GO:0045786,GO:0046483,GO:0046700,GO:0048132,GO:0048137,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048609,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051078,GO:0051081,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051276,GO:0051301,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060231,GO:0060255,GO:0060429,GO:0061024,GO:0061982,GO:0065007,GO:0070316,GO:0070317,GO:0070481,GO:0070651,GO:0070887,GO:0070966,GO:0071310,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090092,GO:0090100,GO:0090287,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090596,GO:0097159,GO:0098722,GO:0098727,GO:0098728,GO:0140013,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903008,GO:1903046,GO:1903506,GO:1990533,GO:2000112,GO:2001141
Exons2
Evalue1.61e-74
EggNOG OGsCOG1537@1|root,KOG2869@2759|Eukaryota
EC4.1.99.3
Descriptionnuclear-transcribed mRNA catabolic process, no-go decay
Cds size639
COG categoryI
BRITEko00000,ko00001,ko01000,ko03400,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186203.9085321-CDS-P-wetherbeei_contig20596:293..4341683186203.9085321-CDS-P-wetherbeei_contig20596:293..434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20596 294..434 +
1683186203.9252286-CDS-P-wetherbeei_contig20596:713..12111683186203.9252286-CDS-P-wetherbeei_contig20596:713..1211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20596 714..1211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20596.1.1prot_P-wetherbeei_contig20596.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20596 294..1211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20596.1.1

>prot_P-wetherbeei_contig20596.1.1 ID=prot_P-wetherbeei_contig20596.1.1|Name=mRNA_P-wetherbeei_contig20596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
RAVLQHVDFGRVRCVLLGGPGFVKDDFWAYLCAESMRRDDRPFIENKGKF
VLVHASSGHRAAVDEALAEPAVQARLADTRAAVEARALEAFFRMLRTDPD
RAIYGPAHVQRAIDTCAVDTLLVTDGLFRAADVPTRRRYVDLVAAAKANG
AAVHVFSSMLGTGEQLGRMTGVAAVLRFPLPDVAEEEALDSDDGDDGDDG
GSGSRGGGGDGGG
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mRNA from alignment at P-wetherbeei_contig20596:294..1211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20596.1.1 ID=mRNA_P-wetherbeei_contig20596.1.1|Name=mRNA_P-wetherbeei_contig20596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig20596:294..1211+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGCGGTGCTGCAGCACGTGGACTTTGGGAGGGTGCGCTGCGTGCTGCT GGGCGGACCAGGTTTCGTTAAAGACGACTTCTGGGCGTACCTGTGCGCCG AGTCAATGCGGCGGGACGATCGGCCCTTCATCGAGAACAAGGTTAGTCCT TTACTCTTGTTTCTCTCTCTTCTTGTGACAGCCGTAACTGTAGAGGTTCG CTTTGGTTCGCATTCTTCTGGAAGGAGTTGAATTCGTGTGGGTTCGTATT GACCGGTTATCCGTGCGACCGTGGGTTGAGTTGCCGTTGGTCGCAAAGTT TTCTGCCTAAGATCGTGATATCCAAAGCTCCTCTGCTGTGCGTGGCTCCT TCAGTAGACGTAGAGCTGGAGTCGCGAAAACGCCATGCTGTTTTCCCAAA CACCCCCCGATTCGTTTCAGGGCAAGTTTGTGCTGGTGCACGCGAGCTCC GGCCACCGCGCTGCCGTCGACGAGGCGCTGGCAGAGCCGGCGGTGCAAGC GCGGCTGGCCGACACGCGGGCGGCGGTGGAAGCGCGGGCCTTGGAGGCCT TCTTCCGGATGCTTCGCACGGACCCGGACCGGGCCATCTACGGACCCGCT CACGTCCAGCGGGCCATCGACACTTGCGCTGTGGACACGCTGCTCGTGAC GGACGGGCTCTTCCGCGCGGCGGACGTTCCGACACGCCGCCGTTACGTGG ACTTGGTGGCGGCAGCAAAAGCGAACGGTGCGGCAGTGCATGTCTTTTCG AGCATGCTCGGCACAGGGGAGCAGCTGGGGCGGATGACGGGCGTCGCGGC GGTGCTTCGGTTCCCGCTGCCGGACGTCGCGGAGGAGGAGGCGCTGGACA GTGACGACGGCGATGATGGCGATGACGGCGGCAGCGGCAGCAGAGGAGGA GGCGGCGACGGCGGTGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20596:294..1211+

>mRNA_P-wetherbeei_contig20596.1.1 ID=mRNA_P-wetherbeei_contig20596.1.1|Name=mRNA_P-wetherbeei_contig20596.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig20596:294..1211+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGCGGTGCTGCAGCACGTGGACTTTGGGAGGGTGCGCTGCGTGCTGCT
GGGCGGACCAGGTTTCGTTAAAGACGACTTCTGGGCGTACCTGTGCGCCG
AGTCAATGCGGCGGGACGATCGGCCCTTCATCGAGAACAAGGGCAAGTTT
GTGCTGGTGCACGCGAGCTCCGGCCACCGCGCTGCCGTCGACGAGGCGCT
GGCAGAGCCGGCGGTGCAAGCGCGGCTGGCCGACACGCGGGCGGCGGTGG
AAGCGCGGGCCTTGGAGGCCTTCTTCCGGATGCTTCGCACGGACCCGGAC
CGGGCCATCTACGGACCCGCTCACGTCCAGCGGGCCATCGACACTTGCGC
TGTGGACACGCTGCTCGTGACGGACGGGCTCTTCCGCGCGGCGGACGTTC
CGACACGCCGCCGTTACGTGGACTTGGTGGCGGCAGCAAAAGCGAACGGT
GCGGCAGTGCATGTCTTTTCGAGCATGCTCGGCACAGGGGAGCAGCTGGG
GCGGATGACGGGCGTCGCGGCGGTGCTTCGGTTCCCGCTGCCGGACGTCG
CGGAGGAGGAGGCGCTGGACAGTGACGACGGCGATGATGGCGATGACGGC
GGCAGCGGCAGCAGAGGAGGAGGCGGCGACGGCGGTGGA
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