mRNA_P-wetherbeei_contig20552.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20552.1.1
Unique NamemRNA_P-wetherbeei_contig20552.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20552.1.1 vs. uniprot
Match: D7G7R5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7R5_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 5.430e-39
Identity = 84/203 (41.38%), Postives = 112/203 (55.17%), Query Frame = 1 
Query:    1 LPVNVSDSVCLTLEAATTPGLEVDKIYLLGGCDAAYQNVTGQCVSTLDKGYAFDPDTREFVATPTMPHSRFRFFATNVSDYVYIFGGRTADNILVCDIDYLHVPSNTWGTVPGDGWTNGYCASDGAAWTGDDGTIYLVGGYDTNFTTAYGVVNRVTFAVDTDTGEPTGATFETDETAKMTIPRGDLGCVRPPASPYAYCVGGF 609
            LPV  SDS+CLT++++   GL+  ++ +LGGCDA +Q V G C S       +DP   EF+    MP  RFR  A NVS++VY+FGGR A   L C++D   V +  W  +     T+  C SD +    DDGTIYL GGYD ++     VV     + DT        TF T E   MTI RGD  C+R PA+   +C+GGF
Sbjct:   12 LPVQASDSLCLTMDSSVVDGLDQTELLVLGGCDAEFQEVAGDCSSISSSTRTYDPFLDEFIENQEMPTERFRAAAVNVSEHVYLFGGRDAAGNLTCNVDRYSVLTGEWTQLDVSQATD--CFSDHSGVASDDGTIYLFGGYDQDYVAQTTVVKVEVSSDDT-------MTFSTTEA--MTIKRGDHSCIRLPATTEVFCIGGF 203
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BLAST of mRNA_P-wetherbeei_contig20552.1.1 vs. uniprot
Match: A0A836C8V3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8V3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.980e-19
Identity = 72/200 (36.00%), Postives = 101/200 (50.50%), Query Frame = 1 
Query:   16 SDSVCLTLEAATTPGLEVDKIYLLGGCDAAYQNVTGQCVSTLDKGYAFDPDTREFVATPTMPHSRFRFFATNVSDYVYIFGGRTADNILVCDIDYLHVPSNTWGTVPGDGWTNGYCASDGAAWTGDDGTIYLVGGYDTNFTTAYGVVNRVTFAVDTDTGEPTGATFETDETAKMTI--PRGDLGCVRPPASPYAYCVGGF 609
            SD+  +T+ A  +   +   + LLGGC    Q V+  C +  D+   + P+T  + A+  M   R+RF A  +   ++IFGGRT ++ +VC++D  +V +  W  +    W N  C SD AA+   D  I LVGGYD N+T   G+   VT  V T TG     TF    T  M I   RGD  C     S  AYC+GGF
Sbjct:   15 SDTTVVTVPANVS---DTTTMVLLGGCTENIQAVS--CQNVTDRVDIYYPETDTYQASTPMLTPRYRFSAAALGANIFIFGGRTNNDTMVCEVDMYNVDTEEWTALVD--WVN--CTSDSAAFVAGDNVIALVGGYDANYTETSGLTTLVT--VGTGTGGTPTLTF----TDGMPIIEARGDHECWSD-RSTVAYCMGGF 198
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BLAST of mRNA_P-wetherbeei_contig20552.1.1 vs. uniprot
Match: A0A6H5K6P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P9_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.370e-7
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 LPVNVSDSVCLTLEAATTPGLEVDKIYLLGGCDAAYQNVTGQCVSTLDKGYAFDP 165
            LPV  SDS+CLTL+++   GL+  ++ +LGGCDA +Q V G C S       +DP
Sbjct:   66 LPVQASDSLCLTLDSSVVDGLDQTELLVLGGCDAEFQEVAGDCSSLSSSTRTYDP 120
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BLAST of mRNA_P-wetherbeei_contig20552.1.1 vs. uniprot
Match: B8C4U8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4U8_THAPS)

HSP 1 Score: 54.7 bits (130), Expect = 2.460e-5
Identity = 48/164 (29.27%), Postives = 73/164 (44.51%), Query Frame = 1 
Query:    1 LPVNVSDSVCLTLEAATTPGLEVDKIYLLGGCDAAYQNVTGQ--------CVSTLDKGYAFDPD-------TREFVATPTMPHSRFRFFATNVSDYVYIFGGRTADNILVCDIDYLHVPSNTWGT---VPGDGWTNGYCASDGAAWTGDDGTIYLVGGYDTNFT 438
            LP  +SD+     + A     ++ +I L GGCD+   N   +        C    ++  AFDP          E+     MP  R R  +  V   V + GGR   + LV +ID     +NTW +   +P +     Y  SD AA+  D  T+YL+GG+D ++T
Sbjct:   49 LPTTLSDT-----DEAIVDFNDMKRIILTGGCDSPKGNEYKEAEWGGYFDCNILSNRTIAFDPVKDSDGVWNGEYEMLSEMPRKRARHVSVVVGGMVCLLGGRDETDGLVAEIDCYDPSTNTWSSPASLPEE-----YRNSDAAAFA-DGNTVYLIGGWDADYT 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20552.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7R5_ECTSI5.430e-3941.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8V3_9STRA1.980e-1936.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5K6P9_9PHAE3.370e-745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B8C4U8_THAPS2.460e-529.27Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20552contigP-wetherbeei_contig20552:450..1058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G7R5
PFAMsBACK,BTB,Kelch_1,Kelch_4
Model size609
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K10443,ko:K10447
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.91e-40
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
Cds size609
COG categoryKLT
BRITEko00000,ko00001,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186202.6142583-CDS-P-wetherbeei_contig20552:449..10581683186202.6142583-CDS-P-wetherbeei_contig20552:449..1058Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20552 450..1058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20552.1.1prot_P-wetherbeei_contig20552.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20552 450..1058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20552.1.1

>prot_P-wetherbeei_contig20552.1.1 ID=prot_P-wetherbeei_contig20552.1.1|Name=mRNA_P-wetherbeei_contig20552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=203bp
LPVNVSDSVCLTLEAATTPGLEVDKIYLLGGCDAAYQNVTGQCVSTLDKG
YAFDPDTREFVATPTMPHSRFRFFATNVSDYVYIFGGRTADNILVCDIDY
LHVPSNTWGTVPGDGWTNGYCASDGAAWTGDDGTIYLVGGYDTNFTTAYG
VVNRVTFAVDTDTGEPTGATFETDETAKMTIPRGDLGCVRPPASPYAYCV
GGF
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mRNA from alignment at P-wetherbeei_contig20552:450..1058+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20552.1.1 ID=mRNA_P-wetherbeei_contig20552.1.1|Name=mRNA_P-wetherbeei_contig20552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig20552:450..1058+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCCCGTGAACGTGTCCGACAGCGTCTGCCTGACGCTCGAGGCGGCGAC
GACGCCGGGCCTCGAAGTCGACAAGATCTACCTCCTCGGCGGCTGCGACG
CTGCGTACCAGAACGTTACCGGGCAGTGCGTGAGCACTCTCGACAAGGGA
TACGCCTTCGACCCGGATACGCGCGAGTTCGTCGCCACGCCGACCATGCC
GCACTCCCGCTTCCGCTTCTTCGCAACCAACGTCTCCGACTATGTCTACA
TCTTCGGCGGCCGCACTGCCGACAACATCCTCGTCTGTGACATTGACTAC
CTCCACGTGCCGAGCAACACGTGGGGAACCGTTCCCGGCGACGGCTGGAC
GAACGGCTATTGCGCGTCGGACGGTGCCGCCTGGACGGGCGACGACGGCA
CCATCTACCTCGTCGGCGGCTACGACACCAACTTCACAACAGCCTATGGC
GTCGTCAACCGGGTCACCTTCGCTGTCGACACCGACACGGGCGAACCAAC
CGGCGCCACCTTCGAGACCGATGAAACCGCCAAAATGACCATCCCGCGCG
GCGACCTCGGCTGCGTGCGCCCGCCGGCATCGCCGTACGCCTACTGCGTC
GGCGGCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20552:450..1058+

>mRNA_P-wetherbeei_contig20552.1.1 ID=mRNA_P-wetherbeei_contig20552.1.1|Name=mRNA_P-wetherbeei_contig20552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig20552:450..1058+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCCCGTGAACGTGTCCGACAGCGTCTGCCTGACGCTCGAGGCGGCGAC
GACGCCGGGCCTCGAAGTCGACAAGATCTACCTCCTCGGCGGCTGCGACG
CTGCGTACCAGAACGTTACCGGGCAGTGCGTGAGCACTCTCGACAAGGGA
TACGCCTTCGACCCGGATACGCGCGAGTTCGTCGCCACGCCGACCATGCC
GCACTCCCGCTTCCGCTTCTTCGCAACCAACGTCTCCGACTATGTCTACA
TCTTCGGCGGCCGCACTGCCGACAACATCCTCGTCTGTGACATTGACTAC
CTCCACGTGCCGAGCAACACGTGGGGAACCGTTCCCGGCGACGGCTGGAC
GAACGGCTATTGCGCGTCGGACGGTGCCGCCTGGACGGGCGACGACGGCA
CCATCTACCTCGTCGGCGGCTACGACACCAACTTCACAACAGCCTATGGC
GTCGTCAACCGGGTCACCTTCGCTGTCGACACCGACACGGGCGAACCAAC
CGGCGCCACCTTCGAGACCGATGAAACCGCCAAAATGACCATCCCGCGCG
GCGACCTCGGCTGCGTGCGCCCGCCGGCATCGCCGTACGCCTACTGCGTC
GGCGGCTTT
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