mRNA_P-wetherbeei_contig20528.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig20528.1.1
Unique Name	mRNA_P-wetherbeei_contig20528.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: A0A836CDG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG4_9STRA)

HSP 1 Score: 146 bits (369), Expect = 9.560e-41
Identity = 71/123 (57.72%), Postives = 84/123 (68.29%), Query Frame = 1

Query:   13 DLSVCYAVRYPNVRNGQNSDRNGGGGASELNIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPHRVRRGKSPRTCFIYEQKYADFYCSRLD 381
            D SVCYA+ YPN              + ELN+ EHVDPSLFVVEP CGVAGLEV D  +R W+  EA C+ G++L++F GKAL+ ATDG I GT HRVRRG   R CFIYEQKY DF+ + LD
Sbjct:  201 DFSVCYALCYPNDATKY---------SEELNVTEHVDPSLFVVEPCCGVAGLEVLDTQSRAWVAVEAICRPGKDLVLFGGKALQEATDGAISGTLHRVRRGPRRRHCFIYEQKYDDFFPAPLD 314

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: W2G4G5_PHYPR (2OG-FeII_Oxy domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2G4G5_PHYPR)

HSP 1 Score: 130 bits (327), Expect = 1.530e-34
Identity = 62/119 (52.10%), Postives = 79/119 (66.39%), Query Frame = 1

Query:   13 DLSVCYAVRYPNVRNGQNSDRNGGGGASEL-NIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPHRVRRGKSPRTCFIYEQKYADFY 366
            D SVCY + YPN+          G G SE  N+ EHVDPSLFVVEP   V GL+V D+ ++QW++AE  C  G+E+++FCG AL  AT+GRI GT HRVRR    R C IYEQKY +++
Sbjct:  198 DFSVCYGLHYPNIE---------GSGQSETENVFEHVDPSLFVVEPVPNVEGLDVFDQHSKQWLKAEKVCVPGKEIVLFCGHALNRATEGRIPGTLHRVRRTPDRRFCIIYEQKYEEYF 307

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: A0A225X080_9STRA (2OG-FeII_Oxy domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X080_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.810e-34
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 1

Query:   13 DLSVCYAVRYPNVRNGQNSDRNGGGGASEL-NIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPHRVRRGKSPRTCFIYEQKYADFY 366
            D SVCY + YPN+          G G SE  N+ EHVDPSL+VVEP   V GL+V D+ ++QW++AE  C  G+E+++FCG AL  AT+GRI GT HRVRR    R C IYEQKY +++
Sbjct:  190 DFSVCYGLHYPNIE---------GSGQSETENVFEHVDPSLYVVEPVPSVEGLDVYDQHSKQWLKAEKVCVPGKEIVLFCGHALNRATEGRIPGTLHRVRRTPDRRFCIIYEQKYEEYF 299

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: A0A1V9ZCM9_9STRA (2OG-FeII_Oxy domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCM9_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.010e-34
Identity = 63/122 (51.64%), Postives = 81/122 (66.39%), Query Frame = 1

Query:   13 DLSVCYAVRYPNVRNGQNSDRNGGGGASELNIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPHRVRRGKS----PRTCFIYEQKYADFY 366
            DLSVCY + YPN        + G G + + N+ EHVDPSL+V+EP   V GL+V D+ ++QWI AE  C   EEL++FCGKAL+ AT+ R+ GT HRV R +S    PR CFIYEQKY  F+
Sbjct:  163 DLSVCYGLHYPN--------KEGTGQSDQENVFEHVDPSLYVIEPVTDVRGLDVFDQASQQWICAEDVCVPHEELVLFCGKALQRATENRVPGTLHRVTRYESTMNIPRYCFIYEQKYESFF 276

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: D7FWG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG5_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.090e-34
Identity = 68/136 (50.00%), Postives = 82/136 (60.29%), Query Frame = 1

Query:    1 DPANDLSVCYAVRYPNVRNGQNSDRNGGGGASELNIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACK-------------TGEELIVFCGKALEGATDGRIKGTPHRVRRGK-SPRTCFIYEQKYADFY 366
            D  +D SV YA+RYPN       ++       +L +GEHVDPSLFV EP CGV GLE+ DR +  W+  EA C               G ELI+F GKALE AT+GR+ G PHRVRRG    R CFIYEQKYA+F+
Sbjct:  215 DSHDDFSVSYALRYPNEFADPALEQ------EDLTVGEHVDPSLFVAEPCCGVEGLEICDRASGSWLPVEAVCAGLGSDGGRSLAAAEGRELILFGGKALERATEGRVLGAPHRVRRGNLGRRHCFIYEQKYAEFF 344

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: D0MZW1_PHYIT (2OG-FeII_Oxy domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZW1_PHYIT)

HSP 1 Score: 129 bits (323), Expect = 5.530e-34
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1

Query:   13 DLSVCYAVRYPNVRNGQNSDRNGGGGASELNIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPHRVRRGKSPRTCFIYEQKYADFY 366
            D SVCY + YPN+         G G +   N+ EHVDPSL+VVEP   V GL+V D+ ++QW++AE  C  G+E+++FCG AL  AT GRI GT HRVRR    R C IYEQKY +++
Sbjct:  194 DFSVCYGLHYPNIE--------GSGQSKTENVFEHVDPSLYVVEPVPNVEGLDVYDQHSKQWLKAEKVCVPGKEIVLFCGHALNRATKGRIPGTLHRVRRTPDRRFCIIYEQKYEEYF 303

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: A0A2P4X7P7_9STRA (2OG-FeII_Oxy domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7P7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.760e-34
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1

Query:   13 DLSVCYAVRYPNVRNGQNSDRNGGGGASELNIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPHRVRRGKSPRTCFIYEQKYADFY 366
            D SVCY + YPN+        +G G +   N+ EHVDPSL+VVEP   V GL+V D  ++QW++AE  C  G+E+++FCG AL  AT+GRI GT HRVRR    R C IYEQKY +++
Sbjct:  212 DFSVCYGLHYPNI--------DGSGQSETENVFEHVDPSLYVVEPVPNVEGLDVYDPYSKQWLKAEKVCIPGKEIVLFCGHALNRATEGRIPGTLHRVRRTPDRRFCIIYEQKYEEYF 321

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: A0A329SZJ4_9STRA (2OG-FeII_Oxy domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZJ4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.430e-34
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 1

Query:   13 DLSVCYAVRYPNVRNGQNSDRNGGGGASEL-NIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPHRVRRGKSPRTCFIYEQKYADFY 366
            D SVCY + YPN+          G G SE  N+ EHVDPSL+VVEP   V GL+V D+ ++QW++AE  C  G+E+++FCG AL  AT GRI GT HRVRR    R C IYEQKY +++
Sbjct:  201 DFSVCYGLHYPNIE---------GSGQSETENVFEHVDPSLYVVEPVPSVEGLDVYDQHSKQWLKAEKVCVPGKEIVLFCGHALNRATKGRIPGTLHRVRRTPDRRFCIIYEQKYEEYF 310

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: A0A7S4DAX6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAX6_HETAK)

HSP 1 Score: 128 bits (321), Expect = 7.370e-34
Identity = 65/125 (52.00%), Postives = 76/125 (60.80%), Query Frame = 1

Query:   13 DLSVCYAVRYPNVRNGQNSDRNGGGGASELNIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPHRVRR--GKSPRTCFIYEQKYADFYCSRLD 381
            + SVCYA+ YPN  +  +          E  + EH+DPSLFV+EP   V GLEV D+ T  WI  E  C  G EL+VF GKAL  AT GR+ GT HRVRR  G  PR CFIYEQKYA +Y   LD
Sbjct:  172 NFSVCYALHYPNDESYPD----------EFAVTEHIDPSLFVIEPCSNVDGLEVLDQATDTWISVEDLCAPGRELVVFTGKALGAATGGRVPGTRHRVRRSRGAVPRCCFIYEQKYAHYYPPPLD 286

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BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Match: A0A6A3UQC8_9STRA (2OG-FeII_Oxy domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UQC8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 9.250e-34
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 1

Query:   13 DLSVCYAVRYPNVRNGQNSDRNGGGGASELNIGEHVDPSLFVVEPACGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPHRVRRGKSPRTCFIYEQKYADFY 366
            D SVCY + YPN+        +G G +   N+ EH+DPSL+VVEP   V GL+V D  ++QW++AE  C  G+E+++FCG AL  AT+GRI GT HRVRR    R C IYEQKY +++
Sbjct:  202 DFSVCYGLHYPNI--------DGSGQSETENVFEHIDPSLYVVEPVPSVEGLDVYDPHSKQWLKAEKVCVPGKEIVLFCGHALNRATEGRIPGTLHRVRRTPDRRFCIIYEQKYEEYF 311

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig20528.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CDG4_9STRA	9.560e-41	57.72	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
W2G4G5_PHYPR	1.530e-34	52.10	2OG-FeII_Oxy domain-containing protein n=8 Tax=Phy...	[more]
A0A225X080_9STRA	1.810e-34	51.26	2OG-FeII_Oxy domain-containing protein n=1 Tax=Phy...	[more]
A0A1V9ZCM9_9STRA	3.010e-34	51.64	2OG-FeII_Oxy domain-containing protein n=1 Tax=Thr...	[more]
D7FWG5_ECTSI	5.090e-34	50.00	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D0MZW1_PHYIT	5.530e-34	50.00	2OG-FeII_Oxy domain-containing protein n=2 Tax=Phy...	[more]
A0A2P4X7P7_9STRA	5.760e-34	50.00	2OG-FeII_Oxy domain-containing protein n=2 Tax=Phy...	[more]
A0A329SZJ4_9STRA	6.430e-34	51.26	2OG-FeII_Oxy domain-containing protein n=1 Tax=Phy...	[more]
A0A7S4DAX6_HETAK	7.370e-34	52.00	Hypothetical protein n=2 Tax=Heterosigma akashiwo ...	[more]
A0A6A3UQC8_9STRA	9.250e-34	49.15	2OG-FeII_Oxy domain-containing protein n=5 Tax=Phy...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig20528	contig	P-wetherbeei_contig20528:265..881 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	4792.ETI37576
PFAMs	2OG-FeII_Oxy
Model size	384
Max annot lvl	4776\|Peronosporales
Hectar predicted targeting category	other localisation
Exons	2
Evalue	2.51e-35
EggNOG OGs	29HEZ@1\|root,2RQMK@2759\|Eukaryota,3Q7QQ@4776\|Peronosporales
Description	2OG-Fe(II) oxygenase superfamily
Cds size	384
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186201.8694794-CDS-P-wetherbeei_contig20528:264..477	1683186201.8694794-CDS-P-wetherbeei_contig20528:264..477	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig20528 265..477 -
1683186201.8805013-CDS-P-wetherbeei_contig20528:710..881	1683186201.8805013-CDS-P-wetherbeei_contig20528:710..881	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig20528 711..881 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig20528.1.1	prot_P-wetherbeei_contig20528.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig20528 265..881 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig20528:265..881-
coding sequence from alignment at P-wetherbeei_contig20528:265..881-

protein sequence of mRNA_P-wetherbeei_contig20528.1.1

>prot_P-wetherbeei_contig20528.1.1 ID=prot_P-wetherbeei_contig20528.1.1|Name=mRNA_P-wetherbeei_contig20528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
DPANDLSVCYAVRYPNVRNGQNSDRNGGGGASELNIGEHVDPSLFVVEPA
CGVAGLEVQDRVTRQWIEAEAACKTGEELIVFCGKALEGATDGRIKGTPH
RVRRGKSPRTCFIYEQKYADFYCSRLD*

mRNA from alignment at P-wetherbeei_contig20528:265..881-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig20528.1.1 ID=mRNA_P-wetherbeei_contig20528.1.1|Name=mRNA_P-wetherbeei_contig20528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=617bp|location=Sequence derived from alignment at P-wetherbeei_contig20528:265..881- (Phaeothamnion wetherbeei SAG_119_79)
GATCCCGCCAACGACCTCTCCGTCTGCTACGCCGTCCGCTATCCCAACGT
CCGAAATGGCCAAAACAGCGACCGAAACGGCGGCGGCGGTGCGTCGGAGC
TGAACATCGGGGAGCACGTCGACCCATCGCTCTTCGTCGTGGAGCCCGCC
TGCGGTGTCGCCGGCTTGGAGGTGCGTTTTCGGTGTTTCTCGTCGCTCAT
GATTTTGTTTTTCGACTGCTGCCACGCTTTCTCTAGGGCTTCTGTTCAGT
TGATTGGAGCCAGATTAGAGGCGGTATCCATCTTTGGGTTTGTTTCCTGA
ATGCCGTCTCGTTCTTTCAACGCTGGCGGCACGCTCACACCCCCTTTTTA
GACACTCGCCCTGCACTATGTGCGCCGGGGCGAGCGGGGCGGGCGTAACG
ACAGGTCCAGGACCGTGTAACCAGGCAGTGGATTGAGGCAGAGGCTGCGT
GCAAAACTGGAGAGGAGCTAATTGTCTTTTGCGGCAAGGCCCTTGAGGGC
GCCACGGACGGTCGCATTAAGGGCACGCCGCACCGGGTGCGGCGGGGGAA
GAGCCCGAGAACGTGCTTCATCTACGAGCAAAAGTACGCCGACTTTTACT
GCTCGCGGCTCGATTGA

Coding sequence (CDS) from alignment at P-wetherbeei_contig20528:265..881-

>mRNA_P-wetherbeei_contig20528.1.1 ID=mRNA_P-wetherbeei_contig20528.1.1|Name=mRNA_P-wetherbeei_contig20528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig20528:265..881- (Phaeothamnion wetherbeei SAG_119_79)
GATCCCGCCAACGACCTCTCCGTCTGCTACGCCGTCCGCTATCCCAACGT
CCGAAATGGCCAAAACAGCGACCGAAACGGCGGCGGCGGTGCGTCGGAGC
TGAACATCGGGGAGCACGTCGACCCATCGCTCTTCGTCGTGGAGCCCGCC
TGCGGTGTCGCCGGCTTGGAGGTCCAGGACCGTGTAACCAGGCAGTGGAT
TGAGGCAGAGGCTGCGTGCAAAACTGGAGAGGAGCTAATTGTCTTTTGCG
GCAAGGCCCTTGAGGGCGCCACGGACGGTCGCATTAAGGGCACGCCGCAC
CGGGTGCGGCGGGGGAAGAGCCCGAGAACGTGCTTCATCTACGAGCAAAA
GTACGCCGACTTTTACTGCTCGCGGCTCGATTGA