mRNA_P-wetherbeei_contig2040.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2040.2.1
Unique NamemRNA_P-wetherbeei_contig2040.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: A0A7R9VE37_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VE37_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.580e-47
Identity = 84/156 (53.85%), Postives = 111/156 (71.15%), Query Frame = 1
Query:   28 KENAKLLLAEQEARTKNWLRLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            K+N   ++A+  +R K W   R Y+   T   FDQ LNKKGSAG++ FD+E++TL+L VQK+N +E +QT +VK LSGGERS+ TLALLL+LG   E PFRVMDEFDVF+D VAR+ A+  +++ A+ L  RQFIFITPQ LS L     +K+ RM
Sbjct:    1 KQNVDAMIADSRSRRKRWREFRGYLVETTNISFDQMLNKKGSAGQLDFDHENQTLNLIVQKDNSNEMSQTKDVKALSGGERSFTTLALLLALGESLETPFRVMDEFDVFLDPVARKIALDNMVSAAKSLEHRQFIFITPQDLSNLTTDPMLKIIRM 156          
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: A0A7S2C434_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C434_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.930e-47
Identity = 83/161 (51.55%), Postives = 114/161 (70.81%), Query Frame = 1
Query:   13 DVEKLKENAKLLLAEQEARTKNWLRLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            +V+ +++N + L  +  AR K W +LR+ ++  T + FDQ LN KG +G+V FD + +TLS+ VQK+N D  +Q  + K LSGGERSY TL+LL+SLG C ECPFRVMDEFDVFMDAV+R+ A++ LI   +    RQFIFITPQ +S +  S  +K+HRM
Sbjct:    1 EVKTVQKNCEDLKVDLNARGKKWQKLRKTVANLTNSKFDQTLNAKGHSGQVVFDYDKKTLSVVVQKDNRDSQSQITDPKLLSGGERSYVTLSLLISLGECIECPFRVMDEFDVFMDAVSRKKALETLIETGKKYAHRQFIFITPQDISSVTPSPMVKIHRM 161          
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: A0A7S1V7X1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V7X1_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.740e-45
Identity = 92/164 (56.10%), Postives = 120/164 (73.17%), Query Frame = 1
Query:    4 KKGDVEKLKENAKLLLAEQEARTKNWLRLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            KK DV  ++EN   L+ + +AR K W + ++Y+S  T   FD+ LN KGS+G +KFD+E  TL L VQK+++DE++QT +VK LSGGERS+ T+ALLLSLG   E PFRVMDEFDVF+D VARR A+K LI  A+ L  RQFIFITPQ LSGL   D +K+H++
Sbjct:  435 KKLDV--IRENVDSLVRDLKARRKLWFQFQKYLSEMTNFGFDEMLNTKGSSGSLKFDHEEHTLDLVVQKDSKDEASQTADVKALSGGERSFTTIALLLSLGERLETPFRVMDEFDVFLDPVARRLALKTLIDLAKRLNHRQFIFITPQDLSGLTPDDKLKIHKL 596          
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: F0YEV6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV6_AURAN)

HSP 1 Score: 156 bits (394), Expect = 2.460e-45
Identity = 76/137 (55.47%), Postives = 106/137 (77.37%), Query Frame = 1
Query:   85 RLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            R+R+YI R++   FD  L  KGSAG++ F+++ +TL L+ QK+N D++   +N+  LSGGERS++TLA+L+SLG+  ECPFRVMDEFDVFMD V+R+ AMKEL+  A+ +  RQFIFITPQ LS LP+SD +K+ +M
Sbjct:   38 RIRQYICRRSNREFDNILQAKGSAGKLDFEHKEKTLGLTYQKDNADDANIINNITSLSGGERSFSTLAMLISLGATIECPFRVMDEFDVFMDQVSRKVAMKELVDMAKKMENRQFIFITPQDLSSLPQSDILKIFKM 174          
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 4.740e-45
Identity = 85/157 (54.14%), Postives = 120/157 (76.43%), Query Frame = 1
Query:   25 LKENAKLLLAEQEARTKNWLRLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            L+ N ++L  E+  RT+ W ++R +++R+T+ LFD YL +KG++GEV+FDNE +TL L+ QK++ D ++Q  +VK LSGGERS+ATLALLL+LG  HECPFRVMDEFDVFMDA++R  A+K++I +A+    RQFI ITPQ LS +  SD  K+ +M
Sbjct: 1088 LEGNMEMLSNERNQRTRRWRQMRDFVARQTSRLFDAYLQEKGASGEVRFDNECQTLGLTYQKDSSDNASQCSDVKLLSGGERSFATLALLLALGQSHECPFRVMDEFDVFMDAMSRNIAIKQVIEFAKRDSSRQFILITPQDLSSVTASDACKIIKM 1244          
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: A0A7S2DFF7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFF7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.160e-44
Identity = 81/165 (49.09%), Postives = 110/165 (66.67%), Query Frame = 1
Query:    1 DKKGDVEKLKENAKLLLAEQEARTKNWLRLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            DKKG ++   EN  LL A+ + R   W  LRR+I+ +T   FDQYL K G +G V F++   T++ +V  NN+D  TQ++     SGGERSY T+ALLLSLG C ECPFR+MDEFDVFMDA++RR AM+ L+     +  RQFIFITPQ +S +     +K+H++
Sbjct:  330 DKKGYLQVTFENINLLQADLKERKSRWKDLRRFIANQTNMFFDQYLQKNGKSGRVNFNHNEETMTFTVCMNNQDSQTQSEVTSLFSGGERSYVTMALLLSLGECIECPFRIMDEFDVFMDAISRRKAMENLVQVGVQMRHRQFIFITPQDISAVTPGPMVKIHKL 494          
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: A0A8J2X4G0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4G0_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.620e-44
Identity = 78/137 (56.93%), Postives = 111/137 (81.02%), Query Frame = 1
Query:   85 RLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            R+R++I R +   FD+ L KKGS+G ++FD+E  TL ++ QK+N+DE+TQ DN++ LSGGERS++TLA+L+SLG+  ECPFRVMDEFDVFMD V+R+ AM+EL+  A ++P RQF+FITPQ LS LP+S+ +KV ++
Sbjct: 1023 RIRKHICRMSNREFDKILQKKGSSGALRFDHEDATLKMTYQKDNQDETTQIDNIQSLSGGERSFSTLAMLVSLGATIECPFRVMDEFDVFMDQVSRKVAMQELVDMAREMPNRQFVFITPQDLSSLPQSNHLKVFKL 1159          
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: A0A7S2KV92_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KV92_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.080e-42
Identity = 78/160 (48.75%), Postives = 120/160 (75.00%), Query Frame = 1
Query:   16 VEKLKENAKLLLAEQEARTKNWLRLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            +E +++N K+L+A+ + R + W+  R +I++ T   FD++L KK SAG V+FD++++ L++  QK+N DESTQT++VK LSGGERS+ TL+LLL++G   E PFRVMDEFDVF+D VAR+ A++ LI  ++++  RQFIFITPQ LS +P  + +K+  +
Sbjct:  453 IEAIEQNVKMLIADVKERKRRWIDFRSHIAQMTNLSFDEFLQKKNSAGRVEFDHDNQQLNIIFQKDNTDESTQTNDVKALSGGERSFTTLSLLLAIGESLETPFRVMDEFDVFLDPVARKRALQTLIEVSKNMEHRQFIFITPQDLSQIPTDNKLKIFHL 612          
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: A0A7S2W981_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W981_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.370e-42
Identity = 81/161 (50.31%), Postives = 115/161 (71.43%), Query Frame = 1
Query:   16 VEKLKENAKLLLAEQEARTKNWLRLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDES-TQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            +E ++ N  L++A+ + R + W + R +I+  T   FDQ LNKKGS+GE+ FD+  +TL+L+VQK+N D + +QT +VK LSGGERS+ TL+LLL+LG   E PFRVMDEFDVF+D ++R+ A++ +I  A+DL  RQFIFITPQ LS L     +K+  M
Sbjct:  124 IETVQVNIDLMIADVKQRQRTWRKFRSHIANMTNETFDQMLNKKGSSGEIAFDHSAKTLNLTVQKDNTDRNMSQTKDVKALSGGERSFVTLSLLLALGENLETPFRVMDEFDVFLDPMSRKIALETMIHVAKDLGHRQFIFITPQDLSNLQTDPMLKIFCM 284          
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Match: A0A7S4NJE4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NJE4_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.430e-40
Identity = 80/165 (48.48%), Postives = 112/165 (67.88%), Query Frame = 1
Query:    1 DKKGDVEKLKENAKLLLAEQEARTKNWLRLRRYISRKTTTLFDQYLNKKGSAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLSLGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQSLSGLPRSDFIKVHRM 495
            DK   +E +  N + ++ +   R K W+  R ++   T   FDQ LNKKGS+G+++F+++  +L+L VQK+N +E +QT +VK LSGGERS+ TLALLL+LG   E PFRVMDEFDVF+D VAR+ A+  ++  A+ L  RQFIFITPQ LS L     +K+ RM
Sbjct: 1120 DKVEQIETIGSNVEAMIKDSRGRRKRWMEFRAHLVETTNNSFDQMLNKKGSSGQLEFNHDDHSLNLIVQKDNTNEMSQTKDVKALSGGERSFTTLALLLALGESLETPFRVMDEFDVFLDPVARKIALDNMVTAAKSLEHRQFIFITPQDLSNLKTDPMLKIIRM 1284          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2040.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9VE37_9STRA1.580e-4753.85Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2C434_9STRA4.930e-4751.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1V7X1_9STRA1.740e-4556.10Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
F0YEV6_AURAN2.460e-4555.47Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D7G4M2_ECTSI4.740e-4554.14Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7S2DFF7_9STRA2.160e-4449.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2X4G0_9STRA5.620e-4456.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2KV92_9STRA1.080e-4248.75Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2W981_9STRA2.370e-4250.31Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4NJE4_9STRA2.430e-4048.48Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2040contigP-wetherbeei_contig2040:2105..3512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G4M2
Preferred nameSMC6
PFAMsAAA_23,SMC_N
Model size495
Max annot lvl2759|Eukaryota
KEGG koko:K12614,ko:K15014
KEGG TC2.A.57.1
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
Exons3
Evalue7.78e-46
EggNOG OGsCOG1196@1|root,KOG0250@2759|Eukaryota
EC3.6.4.13
Descriptiondouble-strand break repair via homologous recombination
Cds size495
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186198.6131074-CDS-P-wetherbeei_contig2040:2104..22361683186198.6131074-CDS-P-wetherbeei_contig2040:2104..2236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2040 2105..2236 -
1683186198.6277897-CDS-P-wetherbeei_contig2040:2545..27461683186198.6277897-CDS-P-wetherbeei_contig2040:2545..2746Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2040 2546..2746 -
1683186198.6369963-CDS-P-wetherbeei_contig2040:3350..35121683186198.6369963-CDS-P-wetherbeei_contig2040:3350..3512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2040 3351..3512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2040.2.1prot_P-wetherbeei_contig2040.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2040 2105..3512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2040.2.1

>prot_P-wetherbeei_contig2040.2.1 ID=prot_P-wetherbeei_contig2040.2.1|Name=mRNA_P-wetherbeei_contig2040.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
DKKGDVEKLKENAKLLLAEQEARTKNWLRLRRYISRKTTTLFDQYLNKKG
SAGEVKFDNEHRTLSLSVQKNNEDESTQTDNVKQLSGGERSYATLALLLS
LGSCHECPFRVMDEFDVFMDAVARRTAMKELIAYAEDLPQRQFIFITPQS
LSGLPRSDFIKVHRM
back to top

mRNA from alignment at P-wetherbeei_contig2040:2105..3512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2040.2.1 ID=mRNA_P-wetherbeei_contig2040.2.1|Name=mRNA_P-wetherbeei_contig2040.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1408bp|location=Sequence derived from alignment at P-wetherbeei_contig2040:2105..3512- (Phaeothamnion wetherbeei SAG_119_79)
GACAAGAAGGGCGACGTGGAGAAGCTGAAGGAGAACGCGAAGCTGCTGCT GGCCGAGCAGGAGGCGCGGACCAAGAATTGGCTGCGGCTGCGGCGTTACA TCTCGCGCAAGACCACCACGCTCTTCGATCAGTACCTCAACAAGAAGGGC TCGGCCGGCGAGGTATGTGTGAGAGACCGGATCGCATCGGGTCCGGGACG GGACCGTACTGGAGCAGACAGGATGAGAGCGGCGATACCTAGGCTCGGCG AGAACGGACAGGACTGGGAAGTGCCGGGCGATGCCAGGTTGGGCGGCGGT GGCATGGGCGGGAGCAGGCAGGGCCGGGAAGCGCCTGTGAGGTGTCAGGT CAGGCTGCGGCGGCATGGGCGGGATGTTTTCTGCCGCTGCGCCGTTCTGA GGCCGCCAATGCCGATATTAGCCGCCGGCCGCCATGTTGTGCCTGTAAGG CCGCCGGGAAGTGCCTGTGAGGCCGCCAACACTGCTATTTGCCGGCGGCC GTCACCACTCGCCGCGTCTGCCACTTGCCTCGCCGTCATTGCAGCGGTGT GCTGCTGCGGTCGCGGGCCGCTGCAGCGTTGCCTGCAGTTGCTTCCTCTA CTGCCTGTTGCGGCCCTTCCCCCGTTCTCCCGCACTGCCATCCGAATGCC GGTGACCGTCAGTTGAAACACTTCAGGCCGCCGCTGCGCCGTCCGGAAAC GTCTCATGGCGCCACATTCTCACACCTGCATGGAAAATTCTCGGAAACCA CTGCTTCTGCCGGCAGGTCAAGTTCGACAACGAGCACCGGACACTGAGCC TGAGCGTGCAAAAGAACAACGAAGACGAGAGCACGCAGACTGACAACGTC AAGCAACTCAGCGGCGGCGAGCGGTCCTACGCAACGCTGGCGCTGCTGCT GTCGCTCGGCAGCTGCCACGAGTGCCCTTTCCGCGTCATGGATGAGTTCG ACGTCTTCATGGACGCGGTGAGCGCCGCTGCTGCTGCCGCTGTTGCCGCC ACTTTGGTAACGAAGCGCCGTACGCGAGGCGGGGACCGGCCTATCTTGCT CTGCCCTCCTCTTGTGCAGTCTGCGGTTCATGTCTTATTCGCAATTCAAA AAAAGGGACCCCTAAAACGTTTCATCTTCGCGCGCGTTCAGCCCGTCGCA GAAACACGCCTCCTGGATAGCGTCGGCGCATCGCCGTGCAACCACGCTCT CTGAACCTCTTTCCATCAATCGGACACTCTTCTCGCCGTAACTGCCGTAC CCGCCCCAAAAACCCTTCCCGGACAGGTGGCCCGACGGACGGCCATGAAG GAGCTGATCGCTTACGCGGAGGATCTCCCGCAACGGCAGTTCATCTTCAT CACGCCGCAGTCACTGTCGGGGCTGCCGCGCTCCGACTTCATCAAGGTGC ACCGCATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2040:2105..3512-

>mRNA_P-wetherbeei_contig2040.2.1 ID=mRNA_P-wetherbeei_contig2040.2.1|Name=mRNA_P-wetherbeei_contig2040.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig2040:2105..3512- (Phaeothamnion wetherbeei SAG_119_79)
GACAAGAAGGGCGACGTGGAGAAGCTGAAGGAGAACGCGAAGCTGCTGCT
GGCCGAGCAGGAGGCGCGGACCAAGAATTGGCTGCGGCTGCGGCGTTACA
TCTCGCGCAAGACCACCACGCTCTTCGATCAGTACCTCAACAAGAAGGGC
TCGGCCGGCGAGGTCAAGTTCGACAACGAGCACCGGACACTGAGCCTGAG
CGTGCAAAAGAACAACGAAGACGAGAGCACGCAGACTGACAACGTCAAGC
AACTCAGCGGCGGCGAGCGGTCCTACGCAACGCTGGCGCTGCTGCTGTCG
CTCGGCAGCTGCCACGAGTGCCCTTTCCGCGTCATGGATGAGTTCGACGT
CTTCATGGACGCGGTGGCCCGACGGACGGCCATGAAGGAGCTGATCGCTT
ACGCGGAGGATCTCCCGCAACGGCAGTTCATCTTCATCACGCCGCAGTCA
CTGTCGGGGCTGCCGCGCTCCGACTTCATCAAGGTGCACCGCATG
back to top