mRNA_P-wetherbeei_contig20335.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20335.1.1
Unique NamemRNA_P-wetherbeei_contig20335.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: Q8QNL5_ESV1K (EsV-1-52 n=2 Tax=root TaxID=1 RepID=Q8QNL5_ESV1K)

HSP 1 Score: 94.4 bits (233), Expect = 7.300e-23
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKKHESEQMKLWRKAVKDTYTLKKYEGKFVKLQIGNPFYKSVCRTYKGLLQEKFGETHHIRK 303
            GSRAQVMHG+AKKT+GG  K DL YN  G IVS+KKS  AKK E+  +KLWRKA+++  +   Y+ KFVK + G+  +  V   Y+ L+ +K+G TH ++K
Sbjct:    8 GSRAQVMHGTAKKTSGGLEKEDLAYNKSGSIVSKKKSLEAKKSENGLLKLWRKAMQEVSSSPMYKDKFVKPKRGSVVHAKVFAEYERLVHDKYGATHDVQK 108          
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: B5LWK2_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK2_9PHYC)

HSP 1 Score: 89.4 bits (220), Expect = 3.730e-21
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKKHESEQMKLWRKAVKDTYTLKKYEGKFVKLQIGNPFYKSVCRTYKGLLQE 273
            GSRA V HG+A+KT+GG  K DLK N  G IVS+K S  AK+ ES  +K WRKAVK+TY   KY GKF  ++ G PFY+ V   Y+ +L++
Sbjct:    5 GSRANVFHGTARKTSGGLVKGDLKLNKNGSIVSKKNSLRAKRTESPLLKAWRKAVKNTYEKPKYAGKFCIIKKGTPFYREVNAEYQKILKK 95          
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: A0A2E5R4B8_9PROT (Uncharacterized protein n=1 Tax=Pelagibacteraceae bacterium TaxID=2026775 RepID=A0A2E5R4B8_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 9.200e-8
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKKHESEQMKLWRKAVKDTYTLKKYEGKFVKLQIGNP 228
            GSRAQVM+G+A+KT+GG  K DLKYN++G IVS KKS  AKK         ++  K  +T KK E   +K++  +P
Sbjct:    8 GSRAQVMNGTAEKTSGGLKKKDLKYNSQGRIVSVKKSRSAKKE--------KRLKKAGWTYKKGEFGAIKIEQKSP 75          
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: A0A6C0I0I7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0I0I7_9ZZZZ)

HSP 1 Score: 53.5 bits (127), Expect = 2.650e-7
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKK 126
            G+RA+VMHG++  T+GG TK DLKYN  G IVS++KSE AKK
Sbjct:   10 GTRAEVMHGTSHHTSGGLTKKDLKYNKHGRIVSKRKSEKAKK 51          
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: A0A6C0JPW8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JPW8_9ZZZZ)

HSP 1 Score: 51.6 bits (122), Expect = 1.570e-6
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKKHESEQMKLWRKAVKDTYTLKKYEGKFVKLQI 219
            GSRA+V HG+AKKTTGG TK DL  N  GEIVSRKK   AK+         ++  K  Y  KK +  +VK ++
Sbjct:    7 GSRAEVFHGTAKKTTGGLTKKDLIKNKHGEIVSRKKHITAKRE--------KRLEKHGYFAKKGKFGYVKKEV 71          
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: F2Y1Z6_9PHYC (Uncharacterized protein n=1 Tax=Organic Lake phycodnavirus 2 TaxID=938082 RepID=F2Y1Z6_9PHYC)

HSP 1 Score: 51.6 bits (122), Expect = 2.300e-6
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKK 126
            GSRA+V HG+AKKTTGG TK DL  N  GEIVSRKK   AKK
Sbjct:   17 GSRAEVWHGNAKKTTGGLTKKDLIQNKWGEIVSRKKHMTAKK 58          
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: A0A6C0D2S1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0D2S1_9ZZZZ)

HSP 1 Score: 50.4 bits (119), Expect = 4.330e-6
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKK 126
            GSRA+V HG+AKKT+GG  K DL  N  GEIVSRKK   AKK
Sbjct:    5 GSRAEVFHGTAKKTSGGLEKKDLLQNKHGEIVSRKKHNTAKK 46          
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: A0A6C0HRE0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HRE0_9ZZZZ)

HSP 1 Score: 51.2 bits (121), Expect = 4.910e-6
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKKHESEQMKLWRKAVKDTYTLKKYEGKFVKL 213
            GSRAQVMHG+A KT+GG  KS++  N  G IVSRKK   AKK         ++ VK  Y  KK +  FVKL
Sbjct:   24 GSRAQVMHGTAYKTSGGLKKSEIMMNKNGRIVSRKKHLTAKKE--------KRLVKAGYGTKKGKFGFVKL 86          
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: A0A6C0EXP9_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EXP9_9ZZZZ)

HSP 1 Score: 50.4 bits (119), Expect = 5.190e-6
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKK 126
            GSRA+V HG+ KKTTGG  K DL  N  GEIVSRKK   AKK
Sbjct:   20 GSRAEVFHGTCKKTTGGLEKKDLMKNKHGEIVSRKKHNTAKK 61          
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Match: A0A6C0HCS3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HCS3_9ZZZZ)

HSP 1 Score: 51.6 bits (122), Expect = 1.020e-5
Identity = 38/71 (53.52%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    1 GSRAQVMHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKKHESEQMKLWRKAVKDTYTLKKYEGKFVKL 213
            GSRAQVMHG+A KT+GG  KSDL  N  G IVSRKK   AKK         R+ VK  Y  KK     VKL
Sbjct:   24 GSRAQVMHGTAYKTSGGLKKSDLLQNKNGRIVSRKKHATAKKE--------RRLVKAGYGTKKGHFGAVKL 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20335.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Q8QNL5_ESV1K7.300e-2350.50EsV-1-52 n=2 Tax=root TaxID=1 RepID=Q8QNL5_ESV1K[more]
B5LWK2_9PHYC3.730e-2152.75Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A2E5R4B8_9PROT9.200e-847.37Uncharacterized protein n=1 Tax=Pelagibacteraceae ... [more]
A0A6C0I0I7_9ZZZZ2.650e-764.29Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0JPW8_9ZZZZ1.570e-647.95Uncharacterized protein n=1 Tax=viral metagenome T... [more]
F2Y1Z6_9PHYC2.300e-671.43Uncharacterized protein n=1 Tax=Organic Lake phyco... [more]
A0A6C0D2S1_9ZZZZ4.330e-666.67Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0HRE0_9ZZZZ4.910e-650.70Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0EXP9_9ZZZZ5.190e-666.67Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0HCS3_9ZZZZ1.020e-553.52Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20335contigP-wetherbeei_contig20335:702..1004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-52
Ec32 orthologEc-06_006270.1
Cds size285
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.7996016-UTR-P-wetherbeei_contig20335:701..7191683186196.7996016-UTR-P-wetherbeei_contig20335:701..719Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20335 702..719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186196.8083928-CDS-P-wetherbeei_contig20335:719..10041683186196.8083928-CDS-P-wetherbeei_contig20335:719..1004Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20335 720..1004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20335.1.1prot_P-wetherbeei_contig20335.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20335 720..1004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20335.1.1

>prot_P-wetherbeei_contig20335.1.1 ID=prot_P-wetherbeei_contig20335.1.1|Name=mRNA_P-wetherbeei_contig20335.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MHGSAKKTTGGKTKSDLKYNARGEIVSRKKSEHAKKHESEQMKLWRKAVK
DTYTLKKYEGKFVKLQIGNPFYKSVCRTYKGLLQEKFGETHHIRK
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mRNA from alignment at P-wetherbeei_contig20335:702..1004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20335.1.1 ID=mRNA_P-wetherbeei_contig20335.1.1|Name=mRNA_P-wetherbeei_contig20335.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig20335:702..1004+ (Phaeothamnion wetherbeei SAG_119_79)
GGTTCGAGGGCTCAGGTCATGCACGGCAGTGCTAAAAAGACAACCGGAGG AAAAACAAAATCCGATCTCAAGTACAATGCGCGTGGAGAGATTGTCTCGC GGAAGAAGAGCGAGCACGCCAAAAAGCACGAGTCTGAACAGATGAAGCTG TGGCGTAAGGCCGTCAAAGACACGTACACACTCAAGAAATACGAGGGCAA ATTTGTGAAATTGCAAATTGGGAACCCCTTCTACAAGTCTGTGTGCCGCA CGTACAAGGGTCTGCTGCAGGAAAAGTTTGGTGAAACCCACCACATCCGT AAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20335:702..1004+

>mRNA_P-wetherbeei_contig20335.1.1 ID=mRNA_P-wetherbeei_contig20335.1.1|Name=mRNA_P-wetherbeei_contig20335.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig20335:702..1004+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGCAGTGCTAAAAAGACAACCGGAGGAAAAACAAAATCCGATCT
CAAGTACAATGCGCGTGGAGAGATTGTCTCGCGGAAGAAGAGCGAGCACG
CCAAAAAGCACGAGTCTGAACAGATGAAGCTGTGGCGTAAGGCCGTCAAA
GACACGTACACACTCAAGAAATACGAGGGCAAATTTGTGAAATTGCAAAT
TGGGAACCCCTTCTACAAGTCTGTGTGCCGCACGTACAAGGGTCTGCTGC
AGGAAAAGTTTGGTGAAACCCACCACATCCGTAAG
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